SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16516
Pre Gene Modal
BGIBMGA009656
Annotation
PREDICTED:_uncharacterized_protein_LOC100902684_[Metaseiulus_occidentalis]
Location in the cell
Nuclear   Reliability : 1.901
 

Sequence

CDS
ATGAATTTCTCGAAGAGAGTGCGCACTAGAATTGTTTGGATTCCTGTAAGGAAGTATCAGAACATAGAATTGGCGGAATTTTCTGTTAATAACGAAGGTATGTGGATCAGGATCGCGGAATTAGTAAACCACGCAGGTCTAAAGCGTTATTATAAATGTAAAGATGTCAATGACGCAGGAGAATCATGCAAAGCCAAACTGTGTATTGTTATAGACAGTGACACGAAAGAAGTTACTTTATACAAATCCGATAAACACAATCATACAAACGAAAAAACAGAGATCGCTAAAATTAAAACACCAGTAAAGGAATTCATACGGAATTTACAAGCCCAAAACTTGAATGCAAAGGACATTTACAAGAGATTAATGGAGCGGAATGATTTAAAGATTCCCACTTACAATCAAGTGGTGCTGTATATTGATGTTTTGCAACGAGAGATCAAGGATGTTGTTATCGACTTGAGAATGTTGGAGAATTGGCTACAAATACACTCTACCACACTGAAGGAGGAGCACAAAGCTTTTGTTATTGCACATCAAGTATTACAGAACAAAAATATTTTTTATGCTGTGATCTCAACAAAGCATCTCTTCAAATTGGCAGTCGATGCTGAAGTATACCATTTGGCTACGATGCAGAAATTAGCTTGGAGTAATCTTCCAGCTTTCGTTTTAGGGGCAACAGATAAGAAAGGAAAGTTTCATGCAATATGCATAATTTTATGTGGATCACTAAATTATTATACTTTTAAATTAATTTTTTTCAACATGAGGACAATGGTTAAAGAATTATTTTGCAAAGAAATGAGGCCTGTTGTAATTGTATCTGATTCTGAGGCTGTTCAAGACGCTTTTGCTGATGTCTTCCAGGTGAAAACTAGAACATGTTGGAGGTATGCACAGAAACAAATCGTCAATCAATTAAAATGGTCCATAAGATCACCGAGACAACTTATGAAGGACTTGAATTTACTAAGATCTGTGACCTGCCCAAGTATCTTTGATGCAGCTTCTGAACTTTTCTTAGAGAAATACGATCATTTAACAACATTCATTGCTTATTTTAAGGAGAAATGGTTGGTCAATGACCGTAAATGGTTCTTAGGGGCAGCTCGACCATCGATACAGACCAATTTTGCATTGCTCAAGTATATAAAACAGATAAAAGATACTTATGATGAGAAATTATGTTTGAGTTTACAGCTACCACAGTTTTTGGATGTTCTTATAAATGTCATAAATGAAACATCAACAAGATATGCTGCTGAAAAAAATATATTTGTGAAAACACAAGAAGTGACAAAAAAAGACTGGATCATTGGTAATGAATGGGTCAAAGGAGCTAAAACGAACATTTTGCTTGTTGATGATAACTACACACATTATGAAGTCACAAATGGAGTGCAGATAGATGATGATGATGATGACAACAAGTGGGTCAGTTTTGATGTTTTTATCAAGAGACATTTTAGTGAGAGTCGTGTTTCAATACCGCTAAATAAACAGCTGTGGTATTTGAGTAAATGTAACTGCCCTACATTTTACAAAACATATAAATGCAAACACATTATCGGTTTATCAATGATGACATGGCCACAATTTAATGAAGACTGTATTGAGATGGAACATGATGTCAATATTTTATAA
Protein
MNFSKRVRTRIVWIPVRKYQNIELAEFSVNNEGMWIRIAELVNHAGLKRYYKCKDVNDAGESCKAKLCIVIDSDTKEVTLYKSDKHNHTNEKTEIAKIKTPVKEFIRNLQAQNLNAKDIYKRLMERNDLKIPTYNQVVLYIDVLQREIKDVVIDLRMLENWLQIHSTTLKEEHKAFVIAHQVLQNKNIFYAVISTKHLFKLAVDAEVYHLATMQKLAWSNLPAFVLGATDKKGKFHAICIILCGSLNYYTFKLIFFNMRTMVKELFCKEMRPVVIVSDSEAVQDAFADVFQVKTRTCWRYAQKQIVNQLKWSIRSPRQLMKDLNLLRSVTCPSIFDAASELFLEKYDHLTTFIAYFKEKWLVNDRKWFLGAARPSIQTNFALLKYIKQIKDTYDEKLCLSLQLPQFLDVLINVINETSTRYAAEKNIFVKTQEVTKKDWIIGNEWVKGAKTNILLVDDNYTHYEVTNGVQIDDDDDDNKWVSFDVFIKRHFSESRVSIPLNKQLWYLSKCNCPTFYKTYKCKHIIGLSMMTWPQFNEDCIEMEHDVNIL

Summary

Pfam
PF04434   SWIM        + More
PF10551   MULE
PF00872   Transposase_mut
Interpro
IPR007527   Znf_SWIM        + More
IPR018289   MULE_transposase_dom       
IPR001207   Transposase_mutator       

Ontologies

Topology

Length:
549
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
16.53506
Exp number, first 60 AAs:
0.00046
Total prob of N-in:
0.73523
outside
1  -  549
 
 

Population Genetic Test Statistics

Pi
4.796314
Theta
18.02004
Tajima's D
-1.385811
CLR
0
CSRT
0.0784460776961152
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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