Gene

KWMTBOMO16513

Pre Gene Modal

BGIBMGA009651

Annotation

putative_cytidine_and_deoxycytidylate_deaminase_zinc-binding_region_[Operophtera_brumata]

Location

Bomo_Scaf005(+):21316-26615      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.658

CDS

ATGCGCGCCGACCTGATTTATTTCATGTTTCTCGTGATTATTTTAACGTTGGCAACAATTGAAGCAACGTACAGAAAACCACCTTTCAATGGATCGATTTTCGGGAAGCGAAATAACGTAGAGAATGATTCCTCGGGCAGAGCGATTGCAGCGTTATGTGAAATCACTACCGAAACTTGCCAGGCTTGGTATCAGGCTTTGGAGAGTCAATTGAAATCGGGCACAAGAACTGAAGGATTAAAAATCAGTGTGAAGAAAGAATACAATAGACAAGGTATGGAACCTCCAGTGAAAAGAAACAGAATTGATGACAGCATAAACAGTATCACGATCAAAAATCAAACAGGCATAGATAATTTGATAGACAGTATAATTAACTCAAAAAATCAGCCGCAAATTATTTTAGGTGATGAATATTACCAGACGCTACCACTAATAAAAGTCTTTATCGGACATGTAAAACAGCCTAAAGACATATCGAAGCTATTTGAAATACTCAATGACAAATTACCATTGAAACATCTGCTACACCTGAAGCGTGTCCGGAAAAAGGATATATTATTATCTCCTGTTTCGTTCTTAAACAGTGACACTCAAGAATCAATTCAAGAATACATTGAACGTAATATACCAGAAATCAAGGATTGCTTCGAATATTTCAGGGAAGCCACCGTACCTTTAACTCCACCGTTAACGAGAAAGCAGTACATGGAAAATTTGAGACACTGGTCACTTAACTTCCATCCGAATCATTATATTGAGACAATAATGAGCGATCAGCCTTTCAAACAGAGCGAAGCAAGGAACCACAGAATATATATGGCCTTGACATTCGAGATCGTAAAATGGTACTTCAACATCAAATCTTACGAGGATATTTTACAGAGTGATTTCAGTGCTGCTGTCGTCGTAGACCCGACCATAAACTCTGTAGTGACTCTGGCTGTGGATAATAGACACGAACATCCTTTACAACATCCGGCAATGTTGGCCATAGATAATGTAGCGAAAACACAAGAAGGCGGTGTTTGGAAAATAGACATTGACGATACTTTAAAAGAAGATTTGAAAGAAAAATTCAAGATACAGTATGGGACTAGAAGTGGCACTGCTGAATCACCTTATTTGTGTACAGGATATTATGTTTATTTATTAAGAGAACCATGCATTATGTGCTCTATGGGCTTAGTGCATGCAAGAGCTAAAAAGATTTTCTTCTCATTAGACACGCCGCTGGGAGGCTTAAAATCCAAGACGAAATTGCAATGTATTGAATCATTGAATCATCGTTTTGAAGTGTTTACCGGGTTTTTGTAA

Protein

MRADLIYFMFLVIILTLATIEATYRKPPFNGSIFGKRNNVENDSSGRAIAALCEITTETCQAWYQALESQLKSGTRTEGLKISVKKEYNRQGMEPPVKRNRIDDSINSITIKNQTGIDNLIDSIINSKNQPQIILGDEYYQTLPLIKVFIGHVKQPKDISKLFEILNDKLPLKHLLHLKRVRKKDILLSPVSFLNSDTQESIQEYIERNIPEIKDCFEYFREATVPLTPPLTRKQYMENLRHWSLNFHPNHYIETIMSDQPFKQSEARNHRIYMALTFEIVKWYFNIKSYEDILQSDFSAAVVVDPTINSVVTLAVDNRHEHPLQHPAMLAIDNVAKTQEGGVWKIDIDDTLKEDLKEKFKIQYGTRSGTAESPYLCTGYYVYLLREPCIMCSMGLVHARAKKIFFSLDTPLGGLKSKTKLQCIESLNHRFEVFTGFL

Uniprot

H9JJF0   A0A0L7LJY6   A0A194R010   A0A2H1V2K5   A0A194PV32   D6WQH0   + More
A0A1Y1L7P1   A0A1W4WYM7   N6UC30   A0A067RLB3   A0A182Y255   U4UES5   A0A182TGA6   Q7PTH0   A0A1S3DUE6   A0A1Z5LF50   A0A182JRP8   A0A2J7Q2T6   A0A182WWT9   A0A131YMM9   L7M1T3   A0A224Z576   A0A182L368   A0A224Z9D2   A0A182HWG6   A0A2P6KB60   A0A2C9KH81   A0A182V1Z6   V5I1R5   T1JP38   E0VJV7   A0A224XGF7   I3KZB0   A0A3B4AD24   A0A1E1XVS2   A0A131XB77   A0A0B6Y6V9   A0A3S0ZPE1   A0A3Q0RD59   A0A232FBB6   A0A2R5LMG9   A0A3Q2W8B1   A0A3Q4N091   A0A3P8NCY2   A0A182T485   A0A3P9CA37   A0A3B4G0R3   A0A3Q1BWE1   A0A154P707   A0A3Q3GWP2   A0A3Q1F785   A0A3B4ZGP3   A0A1J1IB54   A0A195FPJ5   A0A0L7R6G5   A0A3P8RZM2   B3MDF4   A0A3Q3XAW9   B4HNR4   A0A3Q3DBH2   A0A2B4RCJ8   A0A2U9C926   B4QCZ5   A0A3B4TUX8   A0A3Q3M3E7   A0A1A7YHI9   A0A3B4XS30   A0A3Q1HUS9  

Pubmed

19121390    26227816    26354079    18362917    19820115    28004739    + More
23537049    24845553    25244985    12364791    14747013    17210077    28528879    26830274    25576852    28797301    20966253    15562597    25765539    20566863    25186727    25463417    29209593    28049606    28648823    17994087    22936249   

EMBL

BABH01017758    JTDY01000896    KOB75516.1    KQ460890    KPJ11037.1    ODYU01000382    + More
SOQ35073.1    KQ459593    KPI96614.1    KQ971354    EFA06971.1    GEZM01062473    GEZM01062468    JAV69709.1    APGK01035153    KB740923    ENN78191.1    KK852558    KDR21405.1    KB632326    ERL92474.1    AAAB01008807    EAA03932.5    GFJQ02001409    JAW05561.1    NEVH01019077    PNF22888.1    GEDV01008755    JAP79802.1    GACK01007202    JAA57832.1    GFPF01012103    MAA23249.1    GFPF01012104    MAA23250.1    APCN01001491    MWRG01017369    PRD23552.1    GANP01003080    JAB81388.1    JH431970    DS235231    EEB13663.1    GFTR01004859    JAW11567.1    AERX01050421    GFAA01000343    JAU03092.1    GEFH01004218    JAP64363.1    HACG01005202    CEK52067.1    RQTK01000438    RUS79634.1    NNAY01000542    OXU27780.1    GGLE01006594    MBY10720.1    KQ434822    KZC07124.1    CVRI01000042    CRK95673.1    KQ981382    KYN42232.1    KQ414646    KOC66470.1    CH902619    EDV36402.1    CH480816    EDW48483.1    LSMT01000771    PFX14509.1    CP026256    AWP12630.1    CM000362    CM002911    EDX07700.1    KMY94885.1    HADX01007377    SBP29609.1   

Proteomes

UP000005204    UP000037510    UP000053240    UP000053268    UP000007266    UP000192223    + More
UP000019118    UP000027135    UP000076408    UP000030742    UP000075902    UP000007062    UP000079169    UP000075881    UP000235965    UP000076407    UP000075882    UP000075840    UP000076420    UP000075903    UP000009046    UP000005207    UP000261520    UP000271974    UP000261340    UP000215335    UP000264840    UP000261580    UP000265100    UP000075901    UP000265160    UP000261460    UP000257160    UP000076502    UP000261660    UP000257200    UP000261400    UP000183832    UP000078541    UP000053825    UP000265080    UP000007801    UP000261620    UP000001292    UP000264820    UP000225706    UP000246464    UP000000304    UP000261420    UP000261640    UP000261360    UP000265040   

PRIDE

H9JJF0   

Pfam

PF00383   dCMP_cyt_deam_1        + More
PF14437   MafB19-deam
PF04516   CP2
PF00642   zf-CCCH
PF18016   SAM_3

Interpro

IPR016193   Cytidine_deaminase-like        + More
IPR002125   CMP_dCMP_dom       
IPR028883   tRNA_aden_deaminase       
IPR013761   SAM/pointed_sf       
IPR007604   CP2       
IPR001841   Znf_RING       
IPR040167   TF_CP2-like       
IPR036855   Znf_CCCH_sf       
IPR041418   SAM_3       
IPR000571   Znf_CCCH       
IPR013083   Znf_RING/FYVE/PHD       

SUPFAM

SSF53927   SSF53927        + More
SSF47769   SSF47769       
SSF90229   SSF90229       

Gene 3D

1.10.150.50     3.30.40.10    

ProteinModelPortal

H9JJF0   A0A0L7LJY6   A0A194R010   A0A2H1V2K5   A0A194PV32   D6WQH0   + More
A0A1Y1L7P1   A0A1W4WYM7   N6UC30   A0A067RLB3   A0A182Y255   U4UES5   A0A182TGA6   Q7PTH0   A0A1S3DUE6   A0A1Z5LF50   A0A182JRP8   A0A2J7Q2T6   A0A182WWT9   A0A131YMM9   L7M1T3   A0A224Z576   A0A182L368   A0A224Z9D2   A0A182HWG6   A0A2P6KB60   A0A2C9KH81   A0A182V1Z6   V5I1R5   T1JP38   E0VJV7   A0A224XGF7   I3KZB0   A0A3B4AD24   A0A1E1XVS2   A0A131XB77   A0A0B6Y6V9   A0A3S0ZPE1   A0A3Q0RD59   A0A232FBB6   A0A2R5LMG9   A0A3Q2W8B1   A0A3Q4N091   A0A3P8NCY2   A0A182T485   A0A3P9CA37   A0A3B4G0R3   A0A3Q1BWE1   A0A154P707   A0A3Q3GWP2   A0A3Q1F785   A0A3B4ZGP3   A0A1J1IB54   A0A195FPJ5   A0A0L7R6G5   A0A3P8RZM2   B3MDF4   A0A3Q3XAW9   B4HNR4   A0A3Q3DBH2   A0A2B4RCJ8   A0A2U9C926   B4QCZ5   A0A3B4TUX8   A0A3Q3M3E7   A0A1A7YHI9   A0A3B4XS30   A0A3Q1HUS9  

PDB

1WWR     E-value=0.000776828,     Score=101

KEGG

101738151    K15442 tRNA-specific adenosine deaminase 3 | (RefSeq) probable inactive tRNA-specific adenosine deam

GO

GO:0003824   GO:0052717   GO:0002100   GO:0052718   GO:0008251   GO:0046872   GO:0006357   GO:0003700   GO:0016787   GO:0008270   GO:0016459   GO:0006470   GO:0008138   GO:0016491   GO:0016651   GO:0046835   GO:0006281   GO:0006259  

PANTHER

PTHR11037  

SignalP

Position:   1 - 22,         Likelihood:  0.981870

 

 

Length:

438

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

19.18934

Exp number, first 60 AAs:

19.15736

Total prob of N-in:

0.97845

POSSIBLE N-term signal

sequence

inside

1  -  4

TMhelix

5  -  24

outside

25  -  438

 

 

Pi

26.77202

Theta

30.198446

Tajima's D

-0.396888

CLR

0.027942

CSRT

0.269186540672966

Interpretation

Uncertain