Gene

KWMTBOMO16509

Pre Gene Modal

BGIBMGA010192

Annotation

Putative_nuclease_HARBI1-like_Protein_[Tribolium_castaneum]

Location

Bomo_Scaf004(+):162336-163531      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.074

CDS

ATGTCGCTCTCAAGCCTATCGTCGTTGTCTGACCCGGAAGAAGTCGTTTCAACTGGACGTAGAATACCAGATAGGGTAAATATATTTGATGAACATGATGGTGAAGATTTCCGCATTAGATATCGTCTATCTAAAGTTACGGCTCTGCAAATTTCTGAACTTTTGGATTTAGAACCAGTAACACAACGAAATAAAGCCATAGATGGCATAACACAATTATTAATTTGTTTGAGGTTCTTTGCCACTGGATCATTTCAGCAGGTGCTTGGTGATTTAGTTAATATTCATAAATCAACAGTATGTCGTATAGTACAGAAAGTGACACGCAAGCTCGCAGATCTGAGCTTAGCTTATATTAAGATGCCTGATAGGCAGGAGTTGAGAAGGGTTGCAGAAGACTTTTATGAGATTGCTGGATTCCCACGGGTTGCAGGAGCCCTAGATTGCACCCATATCAAAATAGTTAGCCGAGGAGGGTCCTTAGCCGAACTGTATCGTTGCAGAAAAGGATATTTTTCAATTAATGTTCAAGCGGTATGTGATGCCTCTTTAAAAATAAGAGATTTAATTGTAAGGTGGCCAGGATCTGTACATGATTCAACAATATTCAACAACTCCCATTTGTGTGCAGATTTTGAAAGAGGAAAATATAGCCCATACCATTTATTAGGAGATAGTGGCTACTTCAATAAGAACTATTTGCTGACCCCTTTTTTGAATCCTCAAAATTCTGCAGAGGAAGCTTATAATAAAAGCCACATTTCTACTAGAAATACTGTGGAGAGGTGCTTCGGGGTACTTAAACGTCGCTGCCCATGCTTGGAAAAAGGAATAACTTTAAAAAAAACTTCAACCATTCTTCAGGTGATTGTGGCATGTGTAGTGCTACATAACATATGCATAGAGCTAAATGAAGTTGATCCTCCAGAAGACATTGAAATTTCAGTAGACAGTCCTAATATTGGAATATTGTCTATAAGTTCTCAGTCCACAAACAGTGCTGTTCGTGCTGCACTAGTAAATAGTGTGTTTTGTTAA

Protein

MSLSSLSSLSDPEEVVSTGRRIPDRVNIFDEHDGEDFRIRYRLSKVTALQISELLDLEPVTQRNKAIDGITQLLICLRFFATGSFQQVLGDLVNIHKSTVCRIVQKVTRKLADLSLAYIKMPDRQELRRVAEDFYEIAGFPRVAGALDCTHIKIVSRGGSLAELYRCRKGYFSINVQAVCDASLKIRDLIVRWPGSVHDSTIFNNSHLCADFERGKYSPYHLLGDSGYFNKNYLLTPFLNPQNSAEEAYNKSHISTRNTVERCFGVLKRRCPCLEKGITLKKTSTILQVIVACVVLHNICIELNEVDPPEDIEISVDSPNIGILSISSQSTNSAVRAALVNSVFC

Uniprot

H9JKZ1   D6WYB2   A0A1Y1KFZ4   D7EKQ7   A0A1Y1MC35   J9JTM0   + More
J9LL64   A0A2P8Z014   J9JM90   A0A3S2P3B6   C4WUD0   N6TYP6   A0A1I8NJZ2   A0A2S2NKK2   N6UD62   A0A0L7LT10   C4WVD2   A0A2S2NS44   J9KWE0   A0A2R2MN13   S4PD89   A0A3S2KYY9   J9M1Z2   J9K8M3   U4U597   A0A1Y1M7D0   J9JXP4   A0A1Y1KQW0   A0A0J7K466   A0A1Y1MZ45   J9KLH0   A0A1S3JPJ3   X1XI09   J9M2S7   J9L523   J9KQN6   J9JZ87   A0A1Y1KLA7   A0A1Y1MBC4   A0A2A4IV58   A0A1Y1MXP7   X1X0S1   J9LYS1   U4U2V2   X1WZQ8   J9LXS6   A0A2S2Q8E2   J9KK24   J9JJW2   A0A0A9ZIH6   J9LUU4   A0A1Y1KRW4   A0A2R5LJM8   N6TRS6   J9L1A7   A0A3Q0J0W5   A0A3S2LMD2   X1XKK1   J9M943   A0A1B6KEC0   J9KAY9   A0A1Y1KVK5   J9L1W5   A0A2P8YDT7   J9KF22   X1WR39   J9LCM8   A0A1E1WP29   J9M4Q3   A0A0L7L248   A0A1E1VZ84   J9LUG4   J9JZI3   A0A1S3J8B0   A0A2P8Y1X7   A0A1E1W4G1   J9LQJ0   A0A158NUI4   A0A147BBZ9   A0A194QSI6   A0A3L8DKW7   A0A0L7L4N7   A0A0A9X6M5   A0A090X8B9   A0A131XTB4   A0A3B1KGA0   A0A2A4IXD7   J9KAE0   J9KPC8   A0A1Y1M620   A0A3B1K7F4   A0A0J7MTD8  

Pubmed

19121390    18362917    19820115    28004739    29403074    23537049    + More
25315136    26227816    23622113    25401762    21347285    29652888    26354079    30249741    25970599    25329095   

EMBL

BABH01011318    KQ971356    EFA09128.1    GEZM01088054    JAV58326.1    DS497765    + More
EFA11633.1    GEZM01035464    GEZM01035462    JAV83213.1    ABLF02029655    ABLF02030019    ABLF02019988    ABLF02066411    PYGN01000260    PSN49845.1    ABLF02016431    RSAL01001934    RVE40628.1    ABLF02006541    ABLF02042859    AK341014    BAH71500.1    APGK01005289    KB736163    ENN83248.1    GGMR01005102    MBY17721.1    APGK01040149    KB740975    ENN76582.1    JTDY01000151    KOB78582.1    AK341464    BAH71852.1    GGMR01007355    MBY19974.1    ABLF02016012    ABLF02055237    GAIX01003761    JAA88799.1    RSAL01000416    RVE41817.1    ABLF02028680    ABLF02006612    KB632043    ERL88242.1    GEZM01038551    JAV81614.1    ABLF02008545    GEZM01076717    JAV63704.1    LBMM01014280    KMQ85248.1    GEZM01017851    GEZM01017841    GEZM01017840    JAV90428.1    ABLF02022234    ABLF02058482    ABLF02012281    ABLF02058185    ABLF02011053    ABLF02035722    ABLF02034876    ABLF02036739    GEZM01080383    JAV62179.1    GEZM01038550    JAV81615.1    NWSH01007141    PCG63072.1    GEZM01017837    GEZM01017836    GEZM01017835    JAV90434.1    ABLF02020738    ABLF02012895    KB631844    ERL86663.1    ABLF02008641    ABLF02011808    ABLF02003846    GGMS01004279    MBY73482.1    ABLF02038239    ABLF02011428    GBHO01000839    JAG42765.1    ABLF02007356    GEZM01078171    GEZM01078169    GEZM01078168    GEZM01078162    GEZM01078161    GEZM01078158    GEZM01078157    GEZM01078155    GEZM01078153    GEZM01078152    GEZM01078149    GEZM01078144    GEZM01078140    GEZM01078137    JAV62920.1    GGLE01005627    MBY09753.1    APGK01006027    KB736544    ENN83189.1    ABLF02008686    RSAL01000057    RVE49808.1    ABLF02020736    ABLF02017542    GEBQ01030196    JAT09781.1    ABLF02015906    GEZM01078173    GEZM01078172    GEZM01078170    GEZM01078167    GEZM01078166    GEZM01078160    GEZM01078150    GEZM01078147    GEZM01078145    GEZM01078139    GEZM01078138    GEZM01078136    GEZM01078135    GEZM01078134    JAV62907.1    ABLF02019815    ABLF02019816    PYGN01000674    PSN42418.1    ABLF02061340    ABLF02063305    ABLF02010299    GDQN01002346    JAT88708.1    ABLF02016385    JTDY01003471    KOB69505.1    GDQN01011014    GDQN01002039    JAT80040.1    JAT89015.1    ABLF02024993    ABLF02024998    ABLF02025000    ABLF02007265    PYGN01001035    PSN38265.1    GDQN01011578    GDQN01009283    JAT79476.1    JAT81771.1    ABLF02010163    ADTU01026491    GEGO01007104    JAR88300.1    KQ461175    KPJ07945.1    QOIP01000007    RLU20812.1    JTDY01002978    KOB70380.1    GBHO01028298    JAG15306.1    GBIH01002049    JAC92661.1    GEFM01006224    JAP69572.1    NWSH01005652    PCG64078.1    ABLF02014659    ABLF02034348    GEZM01039795    GEZM01039794    GEZM01039793    GEZM01039792    GEZM01039791    GEZM01039790    GEZM01039789    JAV81183.1    LBMM01018514    KMQ83765.1   

Proteomes

UP000005204    UP000007266    UP000007819    UP000245037    UP000283053    UP000019118    + More
UP000095301    UP000037510    UP000085678    UP000030742    UP000036403    UP000218220    UP000079169    UP000005205    UP000053240    UP000279307    UP000018467   

PRIDE

H9JKZ1   

Pfam

PF13359   DDE_Tnp_4        + More
PF16087   DUF4817
PF13843   DDE_Tnp_1_7
PF05699   Dimer_Tnp_hAT
PF00400   WD40

Interpro

IPR027806   HARBI1_dom        + More
IPR026103   HARBI1_animal       
IPR032135   DUF4817       
IPR029526   PGBD       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       

SUPFAM

SSF53098   SSF53098        + More
SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9JKZ1   D6WYB2   A0A1Y1KFZ4   D7EKQ7   A0A1Y1MC35   J9JTM0   + More
J9LL64   A0A2P8Z014   J9JM90   A0A3S2P3B6   C4WUD0   N6TYP6   A0A1I8NJZ2   A0A2S2NKK2   N6UD62   A0A0L7LT10   C4WVD2   A0A2S2NS44   J9KWE0   A0A2R2MN13   S4PD89   A0A3S2KYY9   J9M1Z2   J9K8M3   U4U597   A0A1Y1M7D0   J9JXP4   A0A1Y1KQW0   A0A0J7K466   A0A1Y1MZ45   J9KLH0   A0A1S3JPJ3   X1XI09   J9M2S7   J9L523   J9KQN6   J9JZ87   A0A1Y1KLA7   A0A1Y1MBC4   A0A2A4IV58   A0A1Y1MXP7   X1X0S1   J9LYS1   U4U2V2   X1WZQ8   J9LXS6   A0A2S2Q8E2   J9KK24   J9JJW2   A0A0A9ZIH6   J9LUU4   A0A1Y1KRW4   A0A2R5LJM8   N6TRS6   J9L1A7   A0A3Q0J0W5   A0A3S2LMD2   X1XKK1   J9M943   A0A1B6KEC0   J9KAY9   A0A1Y1KVK5   J9L1W5   A0A2P8YDT7   J9KF22   X1WR39   J9LCM8   A0A1E1WP29   J9M4Q3   A0A0L7L248   A0A1E1VZ84   J9LUG4   J9JZI3   A0A1S3J8B0   A0A2P8Y1X7   A0A1E1W4G1   J9LQJ0   A0A158NUI4   A0A147BBZ9   A0A194QSI6   A0A3L8DKW7   A0A0L7L4N7   A0A0A9X6M5   A0A090X8B9   A0A131XTB4   A0A3B1KGA0   A0A2A4IXD7   J9KAE0   J9KPC8   A0A1Y1M620   A0A3B1K7F4   A0A0J7MTD8  

KEGG

101739557    K23222 nuclease HARBI1 [EC:3.1.-.-] | (RefSeq) putative nuclease HARBI1

GO

GO:0016021   GO:0046983  

Length:

345

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02225

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00204

outside

1  -  345

 

 

Pi

13.734212

Theta

21.946903

Tajima's D

-1.152558

CLR

0

CSRT

0.108894555272236

Interpretation

Uncertain