SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16502
Pre Gene Modal
BGIBMGA004563
Annotation
PREDICTED:_facilitated_trehalose_transporter_Tret1-2_homolog_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 4.992
 

Sequence

CDS
ATGTATATTTCAGCTTCAATCGCAACCCTACCGGTGGCTCCTGCCTGTCTTATATCTGGATGGATATTTGAGAGATTTGGAAGAAGACCAGCTCTATTCATCACATGTGCCCCGTTTCTACTTGGATGGGCTCTCATAATAAAAGCAAACAACCTCACCCTCATGCTGTGCGGGAGATTTTTCACAGGGATGTGCACAGGATTGATAGGTCCTTTGGCATCGGTCTACATAGGAGAAACTACGGAACCGAAGTATAGAGGTCTCTTCCTCGCTGCTATTTCATTAGCAATGGCATCAGGAATGTTTTTCTCGCATATTATCGGCACATTTATATCATGGCAGTGGACTGCGGTCATCTGCGCTCTGTTGCCAATATTAAGTCTAGTTTTATTAGTTTTTGTACCAGAGTCTCCCACTTGGTTAATATCAAGAGGTCACATTGAGGAGGGTGCCAAGGTTTATTACTGGTTAAGAGGGTATAGTGATGAAGCCAAAGATGAATTGAAAGATATAATCGATCAAAATATGGCTTGGATACCCCTATCATGCTTTATGCTCTATATTTGTGCGATTTCAATTGGTCTAGTTCCGTTGCCCTGGATGATGTGTGGGGAGATATTTCCGACTAAGGTTCGAGGCTTAGGTTCGGGAGTTAGTTCAGCTGTGGGTTTGGTCTCTGTATTTGTAGTAGTTAAAACCGCACCAGGCATGATGTCTCACTTGGGACAAGTGTTTACTTTCTCGTTTTACGGAGCGATCGCCTTTATTGGAAGCATCATATTATTCTTTGTTCTCCCCGAGACCAAAGGAAGGAGTCTACAGGAGATTGAAGACAAATTTAAAAATCAAAAGAGTAATGGCTCAAAGTTTTGA
Protein
MYISASIATLPVAPACLISGWIFERFGRRPALFITCAPFLLGWALIIKANNLTLMLCGRFFTGMCTGLIGPLASVYIGETTEPKYRGLFLAAISLAMASGMFFSHIIGTFISWQWTAVICALLPILSLVLLVFVPESPTWLISRGHIEEGAKVYYWLRGYSDEAKDELKDIIDQNMAWIPLSCFMLYICAISIGLVPLPWMMCGEIFPTKVRGLGSGVSSAVGLVSVFVVVKTAPGMMSHLGQVFTFSFYGAIAFIGSIILFFVLPETKGRSLQEIEDKFKNQKSNGSKF

Summary

Uniprot
ProteinModelPortal
PDB
6H7D     E-value=2.38874e-08,     Score=138

Ontologies

Topology

Length:
290
Number of predicted TMHs:
8
Exp number of AAs in TMHs:
165.03268
Exp number, first 60 AAs:
40.35934
Total prob of N-in:
0.19314
POSSIBLE N-term signal
sequence
outside
1  -  3
TMhelix
4  -  23
inside
24  -  29
TMhelix
30  -  47
outside
48  -  59
TMhelix
60  -  78
inside
79  -  84
TMhelix
85  -  107
outside
108  -  111
TMhelix
112  -  134
inside
135  -  176
TMhelix
177  -  199
outside
200  -  213
TMhelix
214  -  231
inside
232  -  243
TMhelix
244  -  266
outside
267  -  290
 
 

Population Genetic Test Statistics

Pi
29.515031
Theta
38.107239
Tajima's D
-0.766905
CLR
0.001691
CSRT
0.189740512974351
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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