SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16501
Pre Gene Modal
BGIBMGA004564
Annotation
PREDICTED:_facilitated_trehalose_transporter_Tret1-like_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 4.988
 

Sequence

CDS
ATGGCATACACCGATAAACAAAAGGAACGATCAAAGGTAACAACAGATTATGAACTAATTGAAGTTGAAGATGGACATTTAACAACAAAAGAGCATGCTGAAACTGATATCATTTATAGTAGCGATGGCTTTAGCTTGTTTGGTGAAGTGGAAGCTACGAAAGAAGATTTATTGGATTCGAAAACTTCTATTCTATTTTCACCGATGTGGAAACAGAGCTTAGCAGCGTCAGTGCCGATCTTGTTAAATATTGCCTTGGGTTTGACGTCTGGATTCTCGGCGACCTTGTTACCACAATTGGAGAAAGAAGCTGGACCCATTCCAGCAGACGAAGAAACAGCGTCTTGGATAGTAAACTTGTTGTCTATTTCAGCTTCAATCGCAGCACTCCCAATGGTTCCCGGCTGCCTAATATCCGGATGGTTGTTTGAAAGATTCGGAAGAAGAAGAGCTCAATTTATAGTATCTGCTTTGTTTCTGATCGGCTGGATCCTTACGGCAACAGCTTACAACCTGACATTTATCCTAAGCGGAAGATTGTTCACTGGGCTTTGCTCAGGATTAATAGCTCCCTTGGGACCGGTATATGTCGGAGAAACTTCGGAACCAAAGTATAGAGGCTTTTTTCTTGCTGCGATTTCGTTAGGCATGGCCTTTGGTATCATATTTGCACATGTAGTCGGCACATTCACATCATGGCAATGGACAGCGGTCATATGCGCTGTGTTTCCAATATTAAGTATAGTCTTACTAGTTTTCATACCAGAAAGTCCCACCTGGTTAATATCAAGAGGTCGCATTGAGGAGGGTGTCAAGGTTTATAACTGGTTAAGAGGGAATAATGACGAAGCCAAAGCTGAACTAAAAGCTATAATTGATCGTAAATTGGCAGCTCATGCTTCCCCAGTACAGACTTGGAGAAATAAACTCCTCTTTCTTAAAAGCCCAGAACTAATAAAGCCTTTAATGATTATGAACTTATTTTTTGCTACATGTCAGTTCACGGGAACAAATGCTGTCACGTTTTATTCTATAGATATTTTGGGAAAGGCTGTATGTAAAGGTATAGATCAGTATTTAGCGATGTTAATAATCGATTTGCTGAGGTTGATAGCTTCACTAGCAGCCTGTGTAATCTGTAAGAAGTATGGTCGAAGAAATGTATTCTTCCTAAGCAGTGGTTTAACTATAATATCTTTAATAGGCTTAGCCTTGTTCTTGTATCTGAAGCCAGAAAACATGTCTTGGATACCACTATTTTGTTTAATGTTTTACATTTGTGCAATAACGATTGGCGTGGATCCAATACCGTGGATTATGTGTGGTGAGATCTTTCCGGAAAATGTTCGTGGAATGGGATCCGGGATCAGTACGGGCGTGGCCTTTGCGAGTTTATTTGTAGTGGTCAAAACAGAACCAGGAATGATGAAGAATTTAGGCGAAGCATTCACTTTTATGATTTACGCGACTGTAACATTATTTGGGGTCGTCATATTATATTTCACTTTGCCAGAAACGAAAGGAAAAAGCTTACATGAGATCGAAGATAAACTCAAAAGTCAAAACTGTAACAATAGCCGAAGATCTGTTGTAATTGCTTAA
Protein
MAYTDKQKERSKVTTDYELIEVEDGHLTTKEHAETDIIYSSDGFSLFGEVEATKEDLLDSKTSILFSPMWKQSLAASVPILLNIALGLTSGFSATLLPQLEKEAGPIPADEETASWIVNLLSISASIAALPMVPGCLISGWLFERFGRRRAQFIVSALFLIGWILTATAYNLTFILSGRLFTGLCSGLIAPLGPVYVGETSEPKYRGFFLAAISLGMAFGIIFAHVVGTFTSWQWTAVICAVFPILSIVLLVFIPESPTWLISRGRIEEGVKVYNWLRGNNDEAKAELKAIIDRKLAAHASPVQTWRNKLLFLKSPELIKPLMIMNLFFATCQFTGTNAVTFYSIDILGKAVCKGIDQYLAMLIIDLLRLIASLAACVICKKYGRRNVFFLSSGLTIISLIGLALFLYLKPENMSWIPLFCLMFYICAITIGVDPIPWIMCGEIFPENVRGMGSGISTGVAFASLFVVVKTEPGMMKNLGEAFTFMIYATVTLFGVVILYFTLPETKGKSLHEIEDKLKSQNCNNSRRSVVIA

Summary

Similarity
Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
EMBL
BABH01025723    BABH01025724    GQ871756    ADM86147.1    JTDY01008796    KOB64392.1    + More
NWSH01000578    PCG75535.1    KQ458671    KPJ05557.1    KZ150249    PZC71834.1    RSAL01000045    RVE50591.1    ODYU01008354    SOQ51878.1    KQ460077    KPJ17883.1    AGBW02009205    OWR51386.1    GFDF01009026    JAV05058.1    GFDF01009027    JAV05057.1    AJWK01032461    AJVK01008157    KQ971345    KYB27009.1    CH477213    EAT47626.1    JXUM01009472    KQ560284    KXJ83288.1    JXUM01086634    KQ563580    KXJ73638.1    AXCM01002831    DS231843    EDS35465.1    ATLV01010625    KE524589    KFB35580.1    PYGN01000511    PSN45090.1    AB901078    BAQ02378.1    AAAB01008960    EAA11457.4    ADMH02001735    ETN61249.1    EDS35464.1    UFQT01000224    SSX22028.1    AXCN02000368    UFQT01001316    SSX30005.1    CVRI01000059    CRL03302.1    APCN01001553    KB632225    ERL90272.1    NEVH01004413    PNF39483.1    KQ460761    KPJ12541.1    JTDY01002470    KOB71349.1    NWSH01006268    PCG63546.1    UFQT01001016    SSX28504.1    PNF39486.1    AGBW02013662    OWR43027.1    KQ459299    KPJ01871.1    APGK01036695    APGK01036696    KB740941    ENN77647.1    BABH01000587    GEDC01018890    JAS18408.1    ODYU01001065    SOQ36788.1    KK853474    KDR07368.1    KQ434796    KZC05843.1    KQ459460    KPJ00667.1    KQ460891    KPJ10840.1    JR037227    AEY57648.1    GEDC01015528    JAS21770.1    ODYU01008270    SOQ51705.1    KZ288248    PBC31149.1    NEVH01005280    PNF39024.1    PNF39025.1    KQ762882    OAD55364.1    JR037228    AEY57649.1    NWSH01002265    PCG68752.1    KZ150055    PZC74334.1    GL440607    EFN65733.1    GEBQ01006488    JAT33489.1    AB550005    BAI83426.1    NWSH01000610    PCG75342.1    GFDF01009003    JAV05081.1    GL440704    EFN65491.1    KQ414615    KOC68688.1    LBMM01000364    KMQ99349.1    GECZ01007067    JAS62702.1    KK852548    KDR21599.1    KQ980713    KYN14397.1    AJWK01013001    KQ976432    KYM87519.1    ADTU01007640    ADTU01007641    NNAY01002414    OXU21332.1    GECU01013815    JAS93891.1    GL762354    EFZ21649.1    KQ435711    KOX79603.1    HM026604    ADG85768.1    QOIP01000010    RLU18157.1    KK107538    QOIP01000005    EZA49147.1    RLU22973.1   
Pfam
PF00083   Sugar_tr
Interpro
IPR005829   Sugar_transporter_CS        + More
IPR020846   MFS_dom       
IPR036259   MFS_trans_sf       
IPR005828   MFS_sugar_transport-like       
IPR003663   Sugar/inositol_transpt       
SUPFAM
SSF103473   SSF103473       
PDB
4LDS     E-value=4.51992e-38,     Score=398

Ontologies

Topology

Length:
533
Number of predicted TMHs:
12
Exp number of AAs in TMHs:
260.80248
Exp number, first 60 AAs:
0
Total prob of N-in:
0.99706
inside
1  -  73
TMhelix
74  -  96
outside
97  -  119
TMhelix
120  -  142
inside
143  -  153
TMhelix
154  -  176
outside
177  -  179
TMhelix
180  -  198
inside
199  -  204
TMhelix
205  -  227
outside
228  -  231
TMhelix
232  -  254
inside
255  -  325
TMhelix
326  -  348
outside
349  -  357
TMhelix
358  -  380
inside
381  -  386
TMhelix
387  -  409
outside
410  -  413
TMhelix
414  -  436
inside
437  -  448
TMhelix
449  -  469
outside
470  -  478
TMhelix
479  -  501
inside
502  -  533
 
 

Population Genetic Test Statistics

Pi
41.902335
Theta
44.087166
Tajima's D
-0.226557
CLR
0
CSRT
0.310934453277336
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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