SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16490  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005634
Annotation
PREDICTED:_protein_shuttle_craft_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.358
 

Sequence

CDS
ATGTCGCAGTGGAACAACTCTTACTCCTACAATGGTCAATACCAAGCCAACGGCTGGAACCGAGATGTTAATGGCCAATATTCAAATTCACAGTATTATAATAACAGGCAAGATTCAAATAATCAATATGTGAGCTTCAATGAGTTCTTAACTCAAATACAAGGCGACAGTGCATCAGTCCCGGGCAATTCGGTTCATTATAATAATGTAAGATATGAAAACTATCCCACCACTCAATACAATTATCAAAACATGCCGTCTACTTCACAGAATAGATCACTAGATAGTTACAATTATCCAACAAATGTGAACCCAAGGAATCCCCAACAGTACCAAATGAATATGCAGAATCAATATGTGCCATCTGAAAGCTATAATAATGAAATTATACTAAAATCTAACTTAACACCTACTGCAACAGAATTTGTACCAAAGAGTATGGCTAAACAGATCACTGGTCACCAAAGTTTAGCAGAACCTGCAACTAATAACGTTAAGCATAATGATGCAAACTGGAGAGAAAGAGAGAGTTTACAACAAAATGGTGAAATTGTAACTAATCAGGTTTCTGAAAATAACAAAAGCCAATACTCCAAAACTCAAAACAGGGTACCTAATAGCCAAGATAATGCGCATTCAAGTGAATCCAATGTTAAAGTTAACGAACCAAGGCACAGAAATGGACATCGTAACAATGAGGCTAATGGTAGTTACTACAATCAAAATAATCAAAGTGAAAGTAAATCTCACAGTAATGAAATAAATAACCATAGTGATTCAAGTAGTAGATACTATGAAAATCAAAGAAATTATGATAGGAATGAGAAGAAAATCATATCAAAGACGAATCCCAAATCAAAACCAAGAGATGCAGATGCTCGTACATTCTACAACAGTTCCATTACTAAGGACAGTCAAGATGTTCGGAATGGAAGAGGTGAGAGTTCTGGCAGGCAAAGGAATTGGGCTGGAAGTCAAAGAATCAAATCTTCAGAGAAGTCAACTCCTGAAGATGAGCAATATGCTACCTCATACACTCAACAGAAACAGGAGAAAGTAGAGAGAAATAAAACAGAGAACATTCCAAGCCCAAACAGGTTTAGAAGCAAAAATATTGAACAAGCAATAAACAAAGAAATGACACAAAGGGAACGCCTGACTGATCAATTAGAAAAAGGAACATTAGAGTGTCTAGTATGTTGCGAGAGAGTTAAACAAACAGAATCCGTGTGGTCGTGTGGCAACTGCTACCATGTACTCCATCTTAGGTGCATAAGAAAATGGGCAATGAGTAGTTTGGTCGGTGAGTTCAATTAA
Protein
MSQWNNSYSYNGQYQANGWNRDVNGQYSNSQYYNNRQDSNNQYVSFNEFLTQIQGDSASVPGNSVHYNNVRYENYPTTQYNYQNMPSTSQNRSLDSYNYPTNVNPRNPQQYQMNMQNQYVPSESYNNEIILKSNLTPTATEFVPKSMAKQITGHQSLAEPATNNVKHNDANWRERESLQQNGEIVTNQVSENNKSQYSKTQNRVPNSQDNAHSSESNVKVNEPRHRNGHRNNEANGSYYNQNNQSESKSHSNEINNHSDSSSRYYENQRNYDRNEKKIISKTNPKSKPRDADARTFYNSSITKDSQDVRNGRGESSGRQRNWAGSQRIKSSEKSTPEDEQYATSYTQQKQEKVERNKTENIPSPNRFRSKNIEQAINKEMTQRERLTDQLEKGTLECLVCCERVKQTESVWSCGNCYHVLHLRCIRKWAMSSLVGEFN

Summary

EMBL
BABH01020191    BABH01020192    KQ461155    KPJ08291.1    KQ459232    KPJ02641.1    + More
RSAL01000090    RVE48091.1    GDQN01005891    JAT85163.1    AGBW02013517    OWR43279.1    FP102340    CBH09293.1    NWSH01000227    PCG78214.1    PCG78213.1    KC469893    AGC92703.2    ODYU01001380    SOQ37468.1    JN175123    AEN68466.1    JN175099    AEN68442.1    JN175086    AEN68429.1    JN175083    AEN68426.1    JN175092    AEN68435.1    JN175084    AEN68427.1    JN175101    AEN68444.1    JN175104    AEN68447.1    JN175117    AEN68460.1    JN175085    JN175093    AEN68428.1    AEN68436.1    JN175113    AEN68456.1    JN175100    AEN68443.1    JN175082    AEN68425.1    JN175122    AEN68465.1    JN175112    AEN68455.1    JN175079    AEN68422.1    JN175094    AEN68437.1    JN175106    JN175118    JN175119    AEN68449.1    AEN68461.1    AEN68462.1    JN175109    AEN68452.1    JN175089    AEN68432.1    JN175116    AEN68459.1    JN175103    AEN68446.1    JN175115    AEN68458.1    JN175120    AEN68463.1    JN175111    AEN68454.1    JN175097    AEN68440.1    JN175096    AEN68439.1    JN175102    AEN68445.1    JN175081    AEN68424.1    JN175110    JN175121    AEN68453.1    AEN68464.1    JN175078    AEN68421.1    JN175105    JN175107    JN175108    AEN68448.1    AEN68450.1    AEN68451.1    JN175080    AEN68423.1    JN175088    AEN68431.1    JN175114    AEN68457.1    JN175091    AEN68434.1    JN175098    AEN68441.1    JN175090    AEN68433.1    JN175087    AEN68430.1    JN175095    AEN68438.1    AJVK01033236    AJVK01033237    DS235093    EEB11835.1   
Pfam
PF01424   R3H        + More
PF01422   zf-NF-X1
Interpro
IPR034076   R3H_NF-X1        + More
IPR034078   NFX1_fam       
IPR001374   R3H_dom       
IPR019787   Znf_PHD-finger       
IPR036867   R3H_dom_sf       
IPR019786   Zinc_finger_PHD-type_CS       
IPR001841   Znf_RING       
IPR000967   Znf_NFX1       
IPR013083   Znf_RING/FYVE/PHD       
SUPFAM
SSF82708   SSF82708       
Gene 3D

Ontologies

Topology

Length:
438
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01466
outside
1  -  438
 
 

Population Genetic Test Statistics

Pi
13.525888
Theta
26.996176
Tajima's D
-1.649329
CLR
0
CSRT
0.0431978401079946
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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