Gene

KWMTBOMO16490  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005634

Annotation

PREDICTED:_protein_shuttle_craft_[Bombyx_mori]

Location

Bomo_Scaf002(+):197356-199681      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.358

CDS

ATGTCGCAGTGGAACAACTCTTACTCCTACAATGGTCAATACCAAGCCAACGGCTGGAACCGAGATGTTAATGGCCAATATTCAAATTCACAGTATTATAATAACAGGCAAGATTCAAATAATCAATATGTGAGCTTCAATGAGTTCTTAACTCAAATACAAGGCGACAGTGCATCAGTCCCGGGCAATTCGGTTCATTATAATAATGTAAGATATGAAAACTATCCCACCACTCAATACAATTATCAAAACATGCCGTCTACTTCACAGAATAGATCACTAGATAGTTACAATTATCCAACAAATGTGAACCCAAGGAATCCCCAACAGTACCAAATGAATATGCAGAATCAATATGTGCCATCTGAAAGCTATAATAATGAAATTATACTAAAATCTAACTTAACACCTACTGCAACAGAATTTGTACCAAAGAGTATGGCTAAACAGATCACTGGTCACCAAAGTTTAGCAGAACCTGCAACTAATAACGTTAAGCATAATGATGCAAACTGGAGAGAAAGAGAGAGTTTACAACAAAATGGTGAAATTGTAACTAATCAGGTTTCTGAAAATAACAAAAGCCAATACTCCAAAACTCAAAACAGGGTACCTAATAGCCAAGATAATGCGCATTCAAGTGAATCCAATGTTAAAGTTAACGAACCAAGGCACAGAAATGGACATCGTAACAATGAGGCTAATGGTAGTTACTACAATCAAAATAATCAAAGTGAAAGTAAATCTCACAGTAATGAAATAAATAACCATAGTGATTCAAGTAGTAGATACTATGAAAATCAAAGAAATTATGATAGGAATGAGAAGAAAATCATATCAAAGACGAATCCCAAATCAAAACCAAGAGATGCAGATGCTCGTACATTCTACAACAGTTCCATTACTAAGGACAGTCAAGATGTTCGGAATGGAAGAGGTGAGAGTTCTGGCAGGCAAAGGAATTGGGCTGGAAGTCAAAGAATCAAATCTTCAGAGAAGTCAACTCCTGAAGATGAGCAATATGCTACCTCATACACTCAACAGAAACAGGAGAAAGTAGAGAGAAATAAAACAGAGAACATTCCAAGCCCAAACAGGTTTAGAAGCAAAAATATTGAACAAGCAATAAACAAAGAAATGACACAAAGGGAACGCCTGACTGATCAATTAGAAAAAGGAACATTAGAGTGTCTAGTATGTTGCGAGAGAGTTAAACAAACAGAATCCGTGTGGTCGTGTGGCAACTGCTACCATGTACTCCATCTTAGGTGCATAAGAAAATGGGCAATGAGTAGTTTGGTCGGTGAGTTCAATTAA

Protein

MSQWNNSYSYNGQYQANGWNRDVNGQYSNSQYYNNRQDSNNQYVSFNEFLTQIQGDSASVPGNSVHYNNVRYENYPTTQYNYQNMPSTSQNRSLDSYNYPTNVNPRNPQQYQMNMQNQYVPSESYNNEIILKSNLTPTATEFVPKSMAKQITGHQSLAEPATNNVKHNDANWRERESLQQNGEIVTNQVSENNKSQYSKTQNRVPNSQDNAHSSESNVKVNEPRHRNGHRNNEANGSYYNQNNQSESKSHSNEINNHSDSSSRYYENQRNYDRNEKKIISKTNPKSKPRDADARTFYNSSITKDSQDVRNGRGESSGRQRNWAGSQRIKSSEKSTPEDEQYATSYTQQKQEKVERNKTENIPSPNRFRSKNIEQAINKEMTQRERLTDQLEKGTLECLVCCERVKQTESVWSCGNCYHVLHLRCIRKWAMSSLVGEFN

Uniprot

H9J7Z2   A0A194QXJ0   A0A194QGR9   A0A3S2LJM5   A0A1E1WDV1   A0A212EP74   + More
D0AB98   A0A2A4K2T6   A0A2A4K355   L7X1P9   A0A2H1V9F9   G3KAV1   G3KAS7   G3KAR4   G3KAR1   G3KAS0   G3KAR2   G3KAS9   G3KAT2   G3KAU5   G3KAS1   G3KAU1   G3KAS8   G3KAR0   G3KAV0   G3KAU0   G3KAQ7   G3KAS2   G3KAU7   G3KAT7   G3KAR7   G3KAU4   G3KAT1   G3KAU3   G3KAU8   G3KAT9   G3KAS5   G3KAS4   G3KAT0   G3KAQ9   G3KAT8   G3KAQ6   G3KAT5   G3KAQ8   G3KAR6   G3KAU2   G3KAR9   G3KAS6   G3KAR8   G3KAR5   G3KAS3   A0A1B0GP93   E0VEM9  

Pubmed

19121390    26354079    22118469    23674305    21841803    20566863    + More

EMBL

BABH01020191    BABH01020192    KQ461155    KPJ08291.1    KQ459232    KPJ02641.1    + More
RSAL01000090    RVE48091.1    GDQN01005891    JAT85163.1    AGBW02013517    OWR43279.1    FP102340    CBH09293.1    NWSH01000227    PCG78214.1    PCG78213.1    KC469893    AGC92703.2    ODYU01001380    SOQ37468.1    JN175123    AEN68466.1    JN175099    AEN68442.1    JN175086    AEN68429.1    JN175083    AEN68426.1    JN175092    AEN68435.1    JN175084    AEN68427.1    JN175101    AEN68444.1    JN175104    AEN68447.1    JN175117    AEN68460.1    JN175085    JN175093    AEN68428.1    AEN68436.1    JN175113    AEN68456.1    JN175100    AEN68443.1    JN175082    AEN68425.1    JN175122    AEN68465.1    JN175112    AEN68455.1    JN175079    AEN68422.1    JN175094    AEN68437.1    JN175106    JN175118    JN175119    AEN68449.1    AEN68461.1    AEN68462.1    JN175109    AEN68452.1    JN175089    AEN68432.1    JN175116    AEN68459.1    JN175103    AEN68446.1    JN175115    AEN68458.1    JN175120    AEN68463.1    JN175111    AEN68454.1    JN175097    AEN68440.1    JN175096    AEN68439.1    JN175102    AEN68445.1    JN175081    AEN68424.1    JN175110    JN175121    AEN68453.1    AEN68464.1    JN175078    AEN68421.1    JN175105    JN175107    JN175108    AEN68448.1    AEN68450.1    AEN68451.1    JN175080    AEN68423.1    JN175088    AEN68431.1    JN175114    AEN68457.1    JN175091    AEN68434.1    JN175098    AEN68441.1    JN175090    AEN68433.1    JN175087    AEN68430.1    JN175095    AEN68438.1    AJVK01033236    AJVK01033237    DS235093    EEB11835.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000283053    UP000007151    UP000218220    + More
UP000092462    UP000009046   

PRIDE

H9J7Z2   

Pfam

PF01424   R3H        + More
PF01422   zf-NF-X1

Interpro

IPR034076   R3H_NF-X1        + More
IPR034078   NFX1_fam       
IPR001374   R3H_dom       
IPR019787   Znf_PHD-finger       
IPR036867   R3H_dom_sf       
IPR019786   Zinc_finger_PHD-type_CS       
IPR001841   Znf_RING       
IPR000967   Znf_NFX1       
IPR013083   Znf_RING/FYVE/PHD       

SUPFAM

SSF82708   SSF82708       

Gene 3D

3.30.1370.50     3.30.40.10    

CDD

cd02643  R3H_NF-X1

ProteinModelPortal

H9J7Z2   A0A194QXJ0   A0A194QGR9   A0A3S2LJM5   A0A1E1WDV1   A0A212EP74   + More
D0AB98   A0A2A4K2T6   A0A2A4K355   L7X1P9   A0A2H1V9F9   G3KAV1   G3KAS7   G3KAR4   G3KAR1   G3KAS0   G3KAR2   G3KAS9   G3KAT2   G3KAU5   G3KAS1   G3KAU1   G3KAS8   G3KAR0   G3KAV0   G3KAU0   G3KAQ7   G3KAS2   G3KAU7   G3KAT7   G3KAR7   G3KAU4   G3KAT1   G3KAU3   G3KAU8   G3KAT9   G3KAS5   G3KAS4   G3KAT0   G3KAQ9   G3KAT8   G3KAQ6   G3KAT5   G3KAQ8   G3KAR6   G3KAU2   G3KAR9   G3KAS6   G3KAR8   G3KAR5   G3KAS3   A0A1B0GP93   E0VEM9  

KEGG

101741751    K12236 transcriptional repressor NF-X1 | (RefSeq) protein shuttle craft

GO

GO:0005634   GO:0003700   GO:0008270   GO:0003676  

PANTHER

PTHR12360  

Length:

438

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01466

outside

1  -  438

 

 

Pi

13.525888

Theta

26.996176

Tajima's D

-1.649329

CLR

0

CSRT

0.0431978401079946

Interpretation

Uncertain