Gene

KWMTBOMO16487

Pre Gene Modal

BGIBMGA005633

Annotation

PREDICTED:_thrombospondin_type-1_domain-containing_protein_7A-like_[Bombyx_mori]

Location

Bomo_Scaf002(+):159336-160907      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.602 Nuclear   Reliability : 1.428

CDS

ATGTATTTAATTACAGATGGTTGGCCGTGTCCCTCAGAAGATCAGTTAATACAAAACGAGACTTGCAACACCCACGCGTGCGCTACATACTCGTGGCTGGCAACACCGTGGGGACCATGTGAGAGAAGACGCACAGATTTCATCCCTGTTACCAACTACACTGATCTAGTGGATGGAGAAACATTCAACGAGAGTGACGATGAGGAGCCCTGTATCGAGGAGGGGGAGATGAATCGTGACGTCATGTGCATACAAAACAACGCTGACGTCGTCCGCGAGGCTTTAGAATTAACATAA

Protein

MYLITDGWPCPSEDQLIQNETCNTHACATYSWLATPWGPCERRRTDFIPVTNYTDLVDGETFNESDDEEPCIEEGEMNRDVMCIQNNADVVREALELT

Uniprot

L7X3X3   A0A212EP93   A0A2H1V9E5   A0A0L7LJ01   A0A194QSJ5   A0A194QAS9   + More
A0A2A4K3G2   A0A3S2NYX4   A0A1B6HD96   A0A1B6GDR7   A0A3B4DFQ6   A0A3B4DBY8   A0A3B1K076   W5LR66   A0A067RMA8   A0A3Q3C0Q9   A0A060WHW9   A0A3Q1FPK7   A0A3Q1GJI1   A0A3Q1FHZ3   I3JH86   A0A3P8NY21   A0A3P8NY44   A0A3Q4HAH9   I3JH87   A0A3P8NYA0   A0A3P9CEK6   A0A1S3NYP5   A0A1S3NYY8   A0A3P8WD15   A0A3B4H4G7   A0A1S3RW23   A0A3P8YCV1   A0A3P8YF12   A0A3P8YCX3   A0A3B3BAU4   W4YV90   A0A1W5BM15   A0A3B3BAX5   A0A3B3D060   A0A3B3BBP5   A0A3B3R2M4   A0A3Q2P7L0   A0A146VLN0   A0A3P9M5M7   A0A3P9M641   A0A146ZS98   A0A3Q2P7P6   A0A3B5LFC8   A0A3B5LNX1   A0A3Q1CIG4   A0A3P8UFD4   A0A0P7V6E6   A0A1L8ENW4   A0A1W4Z6G4   M4AWU2   A0A3Q0RNP6   A0A3Q2Z2Y8   A0A3B3YJZ5   A0A3B3THG0   A0A3B3TH70   A0A3P9MW48   H2T661   A0A2D0PT21   A0A2D0PS36   A0A087XPB8   A0A2D0PQG4   K7FEZ3   A0A1A7X5A7  

Pubmed

23674305    22118469    26227816    26354079    25329095    24845553    + More
24755649    25186727    24487278    25069045    29451363    29240929    17554307    27762356    23542700    21551351    17381049   

EMBL

KC469893    AGC92705.2    AGBW02013517    OWR43277.1    ODYU01001380    SOQ37470.1    + More
JTDY01000925    KOB75410.1    KQ461155    KPJ08289.1    KQ459232    KPJ02643.1    NWSH01000227    PCG78210.1    RSAL01000090    RVE48087.1    GECU01035095    JAS72611.1    GECZ01009219    JAS60550.1    KK852427    KDR24128.1    FR904483    CDQ64809.1    AERX01023934    AERX01023935    AERX01023936    AERX01023937    AERX01023938    AAGJ04059450    AAGJ04059451    AAGJ04059452    AAGJ04059453    GCES01068092    JAR18231.1    GCES01017102    JAR69221.1    JARO02000767    KPP77468.1    CM004483    OCT61032.1    AYCK01015430    AYCK01015431    AGCU01029312    AGCU01029313    AGCU01029314    AGCU01029315    AGCU01029316    AGCU01029317    AGCU01029318    AGCU01029319    AGCU01029320    AGCU01029321    HADW01011604    SBP13004.1   

Proteomes

UP000007151    UP000037510    UP000053240    UP000053268    UP000218220    UP000283053    + More
UP000261440    UP000018467    UP000027135    UP000264840    UP000193380    UP000257200    UP000005207    UP000265100    UP000261580    UP000265160    UP000087266    UP000265120    UP000261460    UP000265140    UP000261560    UP000007110    UP000261540    UP000265000    UP000265180    UP000261380    UP000257160    UP000265080    UP000034805    UP000186698    UP000192224    UP000002852    UP000261340    UP000264820    UP000261480    UP000261500    UP000242638    UP000005226    UP000221080    UP000028760    UP000007267   

Pfam

PF00090   TSP_1

Interpro

IPR000884   TSP1_rpt        + More
IPR036383   TSP1_rpt_sf       

SUPFAM

SSF82895   SSF82895       

Gene 3D

2.20.100.10    

ProteinModelPortal

L7X3X3   A0A212EP93   A0A2H1V9E5   A0A0L7LJ01   A0A194QSJ5   A0A194QAS9   + More
A0A2A4K3G2   A0A3S2NYX4   A0A1B6HD96   A0A1B6GDR7   A0A3B4DFQ6   A0A3B4DBY8   A0A3B1K076   W5LR66   A0A067RMA8   A0A3Q3C0Q9   A0A060WHW9   A0A3Q1FPK7   A0A3Q1GJI1   A0A3Q1FHZ3   I3JH86   A0A3P8NY21   A0A3P8NY44   A0A3Q4HAH9   I3JH87   A0A3P8NYA0   A0A3P9CEK6   A0A1S3NYP5   A0A1S3NYY8   A0A3P8WD15   A0A3B4H4G7   A0A1S3RW23   A0A3P8YCV1   A0A3P8YF12   A0A3P8YCX3   A0A3B3BAU4   W4YV90   A0A1W5BM15   A0A3B3BAX5   A0A3B3D060   A0A3B3BBP5   A0A3B3R2M4   A0A3Q2P7L0   A0A146VLN0   A0A3P9M5M7   A0A3P9M641   A0A146ZS98   A0A3Q2P7P6   A0A3B5LFC8   A0A3B5LNX1   A0A3Q1CIG4   A0A3P8UFD4   A0A0P7V6E6   A0A1L8ENW4   A0A1W4Z6G4   M4AWU2   A0A3Q0RNP6   A0A3Q2Z2Y8   A0A3B3YJZ5   A0A3B3THG0   A0A3B3TH70   A0A3P9MW48   H2T661   A0A2D0PT21   A0A2D0PS36   A0A087XPB8   A0A2D0PQG4   K7FEZ3   A0A1A7X5A7  

KEGG

101741472    no KO assigned | (RefSeq) thrombospondin type-1 domain-containing protein 7A-like

GO

GO:0016021   GO:0031532   GO:0005886  

Length:

98

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00186

Exp number, first 60 AAs:

0.00186

Total prob of N-in:

0.15888

outside

1  -  98

 

 

Pi

20.231816

Theta

33.579917

Tajima's D

-1.255863

CLR

0

CSRT

0.0971951402429879

Interpretation

Uncertain