Silkworm Genome Informatics Database

Gene

KWMTBOMO16485

Pre Gene Modal

BGIBMGA005633

Annotation

PREDICTED:_thrombospondin_type-1_domain-containing_protein_7A-like_[Bombyx_mori]

Location

Bomo_Scaf002(+):144446-145980 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.955

CDS

ATGGCTTCTTGGACAGGAATCCTTGAAAAGTCCGTTGTGAATGATGGTGAATACTCCGCGTACGTGGGCCCCTGGGCTGAATGCAAACTCATGGGGCAGGGGGAGCACGCCACGAGGACCGTTGAAAGATATCTAAGACCGGAAGCCAACTCTTTAGTTCACACGCCTTCATTGGGTATACAACGTCGCCAAGTGCAGTGCCGTTACAAGGATGGCAAGTTTGTCGAAAACATGTAA

Protein

MASWTGILEKSVVNDGEYSAYVGPWAECKLMGQGEHATRTVERYLRPEANSLVHTPSLGIQRRQVQCRYKDGKFVENM

Uniprot

A0A2H1V9E5 A0A2A4K3G2 A0A3S2NYX4 A0A212EP93 A0A194QSJ5 A0A194QAS9 + More

Pubmed

22118469 26354079

EMBL

ODYU01001380 SOQ37470.1 NWSH01000227 PCG78210.1 RSAL01000090 RVE48087.1 + More
AGBW02013517 OWR43277.1 KQ461155 KPJ08289.1 KQ459232 KPJ02643.1

Proteomes

UP000218220 UP000283053 UP000007151 UP000053240 UP000053268

Pfam

PF00090 TSP_1

Interpro

IPR000884 TSP1_rpt + More
IPR036383 TSP1_rpt_sf

SUPFAM

SSF82895 SSF82895

Gene 3D

2.20.100.10

ProteinModelPortal

A0A2H1V9E5 A0A2A4K3G2 A0A3S2NYX4 A0A212EP93 A0A194QSJ5 A0A194QAS9 + More

KEGG

101741472 no KO assigned | (RefSeq) thrombospondin type-1 domain-containing protein 7A-like

GO

GO:0016021

Length:

78

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.26916

outside

1 - 78

Pi

43.637038

Theta

42.961949

Tajima's D

0.050591

CLR

0.003088

CSRT

0.387530623468827

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree