SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16481  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA002209
Annotation
ras-related_GTP-binding_protein_Rab11_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.472
 

Sequence

CDS
ATGGGCACAAGAGAGGATGAATATGATTATTTGTTCAAAGTTGTACTCATTGGAGATTCTGGTGTGGGTAAAAGCAGTCTTCTGTCGCGTTTCACTAGAAATGAATTCAATTTAGAATCTAAATCTACCATAGGTGTGGAATTTGCAACAAGAAGTATAGAGGTCGACGGTAAGACCATAAAAGCTCAGATATGGGACACGGCCGGGCAGGAGCGGTACCGCGCCATCACGTCGGCGTACTACCGCGGCGCGGTGGGCGCGCTGCTCGTGTACGATATCGCCAAGCACCTGTCGTACGAGAACGTGGAGCGGTGGCTGCGCGAGCTGCGCGACCACGCCGACCAGAACATCCTCATCATGCTGGTCGGCAACAAGAGCGATCTCAGACATCTTAGGTCCATCCCGACGGAGGAGGCGAAAGCGTTCGCGGAAGCCAACGGACTTAGTTTTATCGAGACGTCGGCCCTGGACTCTACCAACGTCGAGCCGGCCTTCCAGAACATTCTGACCGAGATCTACAGGATCGTGTCGCAGCGGCAGATGCGCGACCCGCCCGAGGGTGACGTCATCCGGCCCGACGCCGAGCCCGCCGACGTGCGGCCCTCGCAGGCCGACAGTGTGCGGCGCCAGTGCTGCCAGTAG
Protein
MGTREDEYDYLFKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNKSDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEIYRIVSQRQMRDPPEGDVIRPDAEPADVRPSQADSVRRQCCQ

Summary

EMBL
BABH01038377    BABH01038378    BABH01038379    DQ525202    ABF71467.1    RSAL01000033    + More
RVE51445.1    KQ460500    KPJ14265.1    KQ459011    KPJ04367.1    AGBW02014704    OWR41161.1    JTDY01003458    KOB69525.1    GAIX01000908    JAA91652.1    GBXI01012963    GBXI01009057    JAD01329.1    JAD05235.1    GAMC01010773    GAMC01010772    GAMC01010770    JAB95783.1    GAKP01008644    JAC50308.1    GBYB01004232    JAG73999.1    GDHF01010395    GDHF01005225    JAI41919.1    JAI47089.1    GDAI01001385    JAI16218.1    CM000070    EAL28351.1    CH479182    EDW34044.1    CM000160    EDW96218.2    CH480853    EDW51612.1    CH916369    EDV93469.1    CH954181    EDV48295.1    CH933806    EDW13851.1    KRG00673.1    AE014297    AY070528    AY113404    D84315    AB035354    AAF55850.1    AAL47999.1    AAM29409.1    AAN13849.1    BAA21708.1    BAA87880.1    CH940650    EDW66670.1    KRF82851.1    GFDF01003800    JAV10284.1    GFDG01000181    JAV18618.1    GFDG01000185    JAV18614.1    KA646723    AFP61352.1    GFDG01000184    JAV18615.1    CH964272    EDW84553.1    GFDG01000182    JAV18617.1    GALA01000852    JAA94000.1    GFDL01011298    JAV23747.1    DS231872    EDS41401.1    CCAG010015406    DQ440380    CH477573    ABF18413.1    EAT38832.1    JXUM01113767    JXUM01113768    JXUM01113769    JXUM01113770    GAPW01004266    KQ565724    JAC09332.1    KXJ70734.1    KK852626    KDR19906.1    JRES01000301    KNC32578.1    BT001785    AAN71540.1    OUUW01000007    SPP83409.1    GFDG01002803    JAV15996.1    BT056265    ACL68712.1    KT984798    AMZ00350.1    GANO01001172    JAB58699.1    GAMD01002563    JAA99027.1    GGFM01002471    MBW23222.1    GGFK01005305    MBW38626.1    AXCM01000458    AXCN02001200    ADMH02001458    GGFL01004214    ETN62489.1    MBW68392.1    AAAB01008898    EAA44610.3    EAU76886.3    EAU76888.3    EAU76889.3    EGK97198.1    EGK97200.1    EGK97201.1    EGK97202.1    EGK97203.1    EGK97204.1    APCN01005408    JR037338    JR037339    JR037340    AEY57724.1    AEY57725.1    AEY57726.1    GFDG01000183    JAV18616.1    GDIQ01003485    JAN91252.1    NNAY01001153    OXU24971.1    QOIP01000011    RLU16932.1    KQ771982    OAD52511.1    GEDC01029871    GEDC01020444    GEDC01005958    JAS07427.1    JAS16854.1    JAS31340.1    KK107078    EZA60274.1    KQ978292    KYM95545.1    GFDG01002432    JAV16367.1    KQ434857    KZC08834.1    KC571967    AGM32466.1    KQ976398    KYM92686.1    ADTU01001771    ADTU01001772    ADTU01001773    ADTU01001774    KQ414618    KOC67923.1    LBMM01007220    KMQ89934.1    GL446779    EFN87269.1    GL437023    EFN71248.1    GBHO01019460    GBRD01017483    GBRD01006715    JAG24144.1    JAG48344.1    APGK01043768    BT127153    KB741017    KB631644    AEE62115.1    ENN75265.1    ERL84949.1    LJIG01009102    KRT83751.1    AY588075    AAT01087.1    GECZ01027102    JAS42667.1    GECU01001597    JAT06110.1    GALA01000878    JAA93974.1    GEZM01098436    GEZM01098435    JAV53885.1    GFTR01003618    JAW12808.1    GDKW01000961    JAI55634.1    GBGD01002880    JAC86009.1    ACPB03002122    GAHY01000686    JAA76824.1    EF639072    ABR27957.1    CVRI01000006    CRK88227.1    NEVH01005277    PNF39153.1    HQ315779    ADT91500.1    GAMC01010771    JAB95784.1    GGMS01001317    MBY70520.1   
Pfam
PF00071   Ras        + More
PF04427   Brix
Interpro
IPR027417   P-loop_NTPase        + More
IPR001806   Small_GTPase       
IPR005225   Small_GTP-bd_dom       
IPR007109   Brix       
SUPFAM
SSF52540   SSF52540       
PDB
5FBQ     E-value=5.03269e-96,     Score=893

Ontologies

Topology

Length:
213
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.15159
Exp number, first 60 AAs:
0.03938
Total prob of N-in:
0.20393
outside
1  -  213
 
 

Population Genetic Test Statistics

Pi
14.361475
Theta
20.903656
Tajima's D
-0.902202
CLR
0.121812
CSRT
0.154942252887356
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 HLSYENVER 100.00 1e-04
28556443 TNDNLTAVWQGNK 100.00 1e-04
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