Silkworm Genome Informatics Database

Gene

KWMTBOMO16478

Annotation

PREDICTED:_uncharacterized_protein_LOC105841723_[Bombyx_mori]

Location

Bomo_Scaf001(-):194880-196285 View in EpiBrowser

Location in the cell

Extracellular Reliability : 2.114 Nuclear Reliability : 1.828

CDS

ATGCTGCAAGTCGCTCTGCAACGTCAAGCTGCAACGTCATGCTGCAAGTCGCTCTGCAACGTCAAGCTGCAACTTCATGCTGCAACGTCGCTCTGCAACGTCAAGCTGCAACGTCATGTTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCAAGCTGCAACGTCATGTTGCAACGTCGCTCTGCAACGTCATGCTGCAACTTCATGCTGCAACGTCGCTCTGCAACGTCAAGCTGCAACGTCATGCTGCAAGTCGCTCTGCAACGTCAAGCTGCAACTTCATGCTGCAACGTCGCTCTGCAACGTCAAGCTGCAACGTCATGCTGCAAGTCGCTCTGCAACGTCAAGCTGCAACGTCATGTTGCAACGTCGCTCTGCAACGTCATGTTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCATGCTGCAAGTCGCTCTGCAACGTCATGTTGCAACGTCGCTCTGCAACGTCATGCTGCAACTTCATGCTGCAACGTCATGCTGCAAGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATGCTGCAAGTCGCTCTGCAACGTCAGCTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATGTTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCATGTTGCAACGTCGCTCTGCAACGTCATGCTGCAAGTCGCTCTGCAACGTCATGTTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCATGCTGCAAGTCGCTCTGCAACGTCATGCTGCAAGTCGCTCTGCAACGTCATGCTGCAAGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATGTTGCAACGTCGCTCTGCAACGTCAAGCTGCAACGTCGCTCTGCAACGTCAAGCTGCAACGTCATGTTGCAACGTCGCTCTGCAACGTCATGTTGCAACGTCGCTCTGCAACGTCATGTTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCATGTTGCAACGTCGCTCTGCAACGTCATGCTGCAACTTCATGCTGCAACGTCATGCTGCAAGTCGCTCTGCAACGTCAAGCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCATGTTGCAACGTCGCTCTGCAACGTCAAGCTGCAACGTCGCTCTGCAACGTCATGCTGCAACGTCGCTCTGCAACGTCAGACAGCCAGACACACCTCGATTTGA

Protein

MLQVALQRQAATSCCKSLCNVKLQLHAATSLCNVKLQRHVATSLCNVMLQRRSATSSCNVMLQRRSATSCCNFMLQRRSATSSCNVMLQVALQRQAATSCCNVALQRQAATSCCKSLCNVKLQRHVATSLCNVMLQRRSATSCCNVMLQVALQRHVATSLCNVMLQLHAATSCCKSLCNVMLQRRSATSCCKSLCNVSSLCNVMLQRRSATSCCNVALQRHAATSCCNVALQRHAASRSATSCCNVALQRHAATSCCKSLCNVMLQVALQRHAASRSATSCCNVALQRHVATSLCNVKLQRRSATSSCNVMLQRRSATSCCNVALQRHVATSLCNVMLQRHVATSLCNVMLQLHAATSCCKSLCNVKLQRRSATSCCNVALQRHVATSLCNVKLQRRSATSCCNVALQRQTARHTSI

Similarity

Belongs to the WD repeat SEC13 family.

Uniprot

A0A3R7QNP1 A0A1S3MJI7 A0A1S3MK87 A0A1S3MJ86 A0A1S3MJ53 A0A1S3MK91 + More
T2MCP8 R7VNW8 A0A0E3S0X9 A0A1S3M702 A0A1S3M643 A0A1S3M6Z3 A0A2I0K3D9 A0A1Q9ESK4 A0A210QIC7 A0A210QVX4

Pubmed

24065732 23371554 28812685

EMBL

QCYY01000460 ROT84963.1 HAAD01003480 CDG69712.1 KB375913 EMC79776.1 + More
CP009515 AKB73666.1 PGOL01000959 PKI62633.1 LSRX01000079 OLQ10409.1 NEDP02003577 OWF48351.1 NEDP02001613 OWF52891.1

Proteomes

UP000283509 UP000087266 UP000033072 UP000233551 UP000242188

Pfam

PF13306 LRR_5 + More
PF00400 WD40

Interpro

IPR011004   Trimer_LpxA-like_sf        + More
IPR026906   LRR_5
IPR033201   HRNR
IPR037597   Nucleoporin_Seh1
IPR015943   WD40/YVTN_repeat-like_dom_sf
IPR001680   WD40_repeat
IPR017986   WD40_repeat_dom
IPR037363   Sec13/Seh1_fam
IPR036322   WD40_repeat_dom_sf

SUPFAM

SSF51161 SSF51161 + More
SSF50978 SSF50978

Gene 3D

2.130.10.10

ProteinModelPortal

A0A3R7QNP1 A0A1S3MJI7 A0A1S3MK87 A0A1S3MJ86 A0A1S3MJ53 A0A1S3MK91 + More
T2MCP8 R7VNW8 A0A0E3S0X9 A0A1S3M702 A0A1S3M643 A0A1S3M6Z3 A0A2I0K3D9 A0A1Q9ESK4 A0A210QIC7 A0A210QVX4

KEGG

105841723 no KO assigned | (RefSeq) uncharacterized LOC105841723

GO

GO:0001533 GO:0016021 GO:0015031 GO:1904263 GO:0005198

PANTHER

PTHR22571:SF25 PTHR11024:SF3 PTHR11024

Length:

417

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00621

Exp number, first 60 AAs:

0.00011

Total prob of N-in:

0.01013

outside

1 - 417

Pi

27.251434

Theta

38.658672

Tajima's D

-0.852189

CLR

0.000001

CSRT

0.164191790410479

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree