SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16471  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013806
Annotation
PREDICTED:_uncharacterized_protein_LOC105841662_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.217
 

Sequence

CDS
ATGTACCGCACACCCACGACTTCGGGCGCCGCTAAAAACCCTACCACTCCCAGCCCTGCTACCACAACTGCAGTGGCACAAGGTGCCGCAAGGACGTTTATAAAAAGACCGGATGCCAAAAGGAGATCACTGGATAATATGGACGTTTATAAAAAGCAGCAACAAAACTACGCTGTACTACCGAGTAATCAGCTCCTCCAGGAGATAATGAAGACTTTTGAGGACATACCCTCGAAAGTTCAAGAGTACCCTCAGATGAGGAGGGATATCAAACAGTTCCTGGAGGTGCAGTCAGATAAGGGTATACGTGCAATCTTCGAGCTCAGTAGGCGCATCCAAAGTCTCGAAGCAGAGGCCCCGAAGACAAGGACACTTGCGGAAACCTCGTCGTCTTATGTCCAAGATATCATACTTGGGAGGCTGGGAGAGGTAGAAACGACACTGACTGGGCGACTGAACGAGATTGAGAGAAGTCTGAAAAGGGACATAATACAACTGAACGATGAAAATGACGGCCGGGGCTCCGACATGATCGACAAGATCATCGACAGGATCGACGAAACCAGAGCTGCCATGGACCAAACGACCGAGGCGGTCGAGAGTCGAACGCACGCTCTCGTCAAGGATCTGGTCGGTGGTCTTGCCGATGATGTCGTTGCAGCAAAACAAGAACTTACGGAGGTCGCAAAAGGACTGGTATGCGATACAAACTTAGCTCCAGTCTCTAAGTCATACGCCAGCGTCGCAGCAGCCAAACCCGTCCACCGTCCTGCACTTCATTCGATGGCAGTCACTCTCGAAGGTAGTCAGGAGACTGCTGACGAGGTGCTCGCCAGGGTGAAGAGGGCAGTCGACGCCAGAGGCACTGGACTTAAAATTAACAAGGTACGCAAGGCGAAAAACCAAACTATTATATTGGGTTGCGACACCGAGGAGGAAAGAAAGAAAGTCCAAGAGATAATAGAGAGTCGTGGGGATGGACTGGTAGTAGCGCCCATGAAGAACAAGAGCCCTCTCGTTGTCCTGAAGGATGTTTTCGTGGAAAGTGAAGACGACGATATGATTAAGGCACTCCACGTCCAAAACAAGAACATATTCATGGGCCTACCGGAAGAAGACATGCAAATGGAAATAAAATTTAAAAAACGTACCAGAAACCCAAAGACCGCGCACATCATCTTGCAAGTGAAGCCGAAAGTATGGCAGAGGATGACGGAAGCTGGAGCCCTCTATCTGGACCTTCAAAGGGTCAGAGTCGAGGACCAGTCTCCGCTCATCCAATGCACGAGGTGCCTCGCATTTGGACATGGTCGTAAATTTTGCACCGAGAGTGTGGACAGATGCAGTCACTGTGGAGGACCGCATCTGCGCGAAAAATGCGCAGACTTTATCGCAGGGACCGAACCGCGGTGCTGCAACTGCTCACACTCTGGGTTGCGGAAGGCTGACCACAACGCTTTTAGCGCCGAATGCCCGGTACGAAAAAAGTGGGACTACTTGGCTCGCGCAAATACCACATATGCATGA
Protein
MYRTPTTSGAAKNPTTPSPATTTAVAQGAARTFIKRPDAKRRSLDNMDVYKKQQQNYAVLPSNQLLQEIMKTFEDIPSKVQEYPQMRRDIKQFLEVQSDKGIRAIFELSRRIQSLEAEAPKTRTLAETSSSYVQDIILGRLGEVETTLTGRLNEIERSLKRDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQTTEAVESRTHALVKDLVGGLADDVVAAKQELTEVAKGLVCDTNLAPVSKSYASVAAAKPVHRPALHSMAVTLEGSQETADEVLARVKRAVDARGTGLKINKVRKAKNQTIILGCDTEEERKKVQEIIESRGDGLVVAPMKNKSPLVVLKDVFVESEDDDMIKALHVQNKNIFMGLPEEDMQMEIKFKKRTRNPKTAHIILQVKPKVWQRMTEAGALYLDLQRVRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPRCCNCSHSGLRKADHNAFSAECPVRKKWDYLARANTTYA

Summary

Pfam
PF00098   zf-CCHC
Interpro
IPR036875   Znf_CCHC_sf        + More
IPR001878   Znf_CCHC       
SUPFAM
SSF57756   SSF57756       
ProteinModelPortal

Ontologies

Topology

Length:
508
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00283
Exp number, first 60 AAs:
0.00283
Total prob of N-in:
0.00579
outside
1  -  508
 
 

Population Genetic Test Statistics

Pi
211.029105
Theta
131.879251
Tajima's D
2.466362
CLR
0
CSRT
0.943502824858757
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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