SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16466  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013884
Annotation
mitochondrial_ribosomal_protein_L54_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 2.975
 

Sequence

CDS
ATGTATAGTGGGATGTTACAGCAACTTCTGCCTCTACGAAGTATGTTAACTACACAACTAGCAAATTTCCACACCAAAGGAGCTTGTTATGCGGCTGCCAAGAAGACAACGACGGCAGCTGGAGGTGTGATGGGTCTGGGAAAGGGTAAGAAGAAAGCTGGCAAACTCACTGCCATGGAAAAGAAAGAGATGCCTGTAGAAACAGATCCCCACAAGCTGGTCAACTACGTATGTGGCTCCAACATATACACGACAGGTGAAGATGTCAAGATAAAGCCGGACAGTGAGTACCCAGAGTGGTTGTGGAGCCTCAACACGGGGGCTGCTCCTCGCATCGAGGACCTAGATCCGGAGACAAAGCAGTACTGGATCCGGGTGCGCGCCGCCGGTATGAGGAGGAACAATAAACTGCGCAGTCTCAGGAAGTTCTAA
Protein
MYSGMLQQLLPLRSMLTTQLANFHTKGACYAAAKKTTTAAGGVMGLGKGKKKAGKLTAMEKKEMPVETDPHKLVNYVCGSNIYTTGEDVKIKPDSEYPEWLWSLNTGAAPRIEDLDPETKQYWIRVRAAGMRRNNKLRSLRKF

Summary

Pfam
PF08561   Ribosomal_L37
Interpro
IPR013870   Ribosomal_L37_mit       
PDB
6GB2     E-value=1.02685e-17,     Score=214

Ontologies

Topology

Length:
143
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02809
Exp number, first 60 AAs:
0.02809
Total prob of N-in:
0.07756
outside
1  -  143
 
 

Population Genetic Test Statistics

Pi
220.685873
Theta
177.906539
Tajima's D
0.769274
CLR
0.118624
CSRT
0.591820408979551
Interpretation
Uncertain
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