Gene

KWMTBOMO16462

Annotation

reverse_transcriptase_[Lasius_niger]

Location

Bomo_Chr28(+):10477578-10478988      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.375

CDS

ATGATACCTAAAGTAGGGAAGCCAGTGAACGAACTTAGCTCATACAGGCCGATTAGTCTACTAACCGTAACGTCAAAACTTTTTGAGTCAGTCCTGCTGCACAGATTATTGGAGGAGATTCATCAAAGAGCCATAATCCCGGACCACCAGTTTGGCTTTCGCCAGCAGCATGGCACTGTGGAACAAGTCCATAGAATCTGCTCTGTGATAAGGAAGGCAATAGAGAGAAAGGAGTACTGCTCCTCTGCCTTCCTAGACGTGCAGCAAGCGTTTGATAGAGTATGGCACAAAGGTCTCTTGTATAAAGTAAAAACTCTTCTACCCTGTACATTCTTCCCCATCATAAAATCTTATCTAACAGAAAGAATATTTCAAATAAGAGAAGAAGAGTGTACATCGCCATTTCACTCAATCAAAGCTGGTGTACCGCAGGGGTCTGTCCTGGGTCCTGTCTTGTATACCATTTACACATGTGATTTACCACAAAGCGAACATGTTACATTAGCAACATTCGCAGACGATACCGCTGTACTGGCATGTAGCAATTGCCCAAACGAAGCTTCAGACTTCCTACAGACTGGATTGCAAGAAATTGAAACTTGGCTTTCAAAGTGGAGAATAAAAACTAGTGTGACAAAATCCGTTCATGTAACCTTCACCCTCCGTAGAGGAGACTGTCCGCCAGTAACTCTGTGCAATCAACAACTCCCGCAAGAACACTGCGTAAAATACTTGGGAATACACCTTGATAGGAGACTCGTATGGAAACAACACATACAGAAGAAGAGAGAAGAAATCAACCTGAAATACAGAGGACTCTACTGGCTGCTTGGCAGAAATTCCAAGCTGTCAGTAGATAATAAGCTACTCATCTACGAAATGCTCTTGAAACCAATTTGGACATACGGGATTCAACTATGGGGTTCGGCGTGTGACTCTAACATAAATATCATACAGAGGGTTCAAAATTACATCCTGAAACAAATATCGAACTGTCCGTGGTTTATAAAAACATCGGAGATTCATGAACACCTCAAAATCAGGACTGTTAAACAGGAAATCAAGACCTGGAGTATGAAATACAGAAAAAGGCTAGAAATGCATCCTAATAAGCTTGCCACGCAACTAACCACACCGGACCTAATAAATAGGCTTAAAAGGCGACAAATCCTAAGTCTTGATAGACACGGTTGA

Protein

MIPKVGKPVNELSSYRPISLLTVTSKLFESVLLHRLLEEIHQRAIIPDHQFGFRQQHGTVEQVHRICSVIRKAIERKEYCSSAFLDVQQAFDRVWHKGLLYKVKTLLPCTFFPIIKSYLTERIFQIREEECTSPFHSIKAGVPQGSVLGPVLYTIYTCDLPQSEHVTLATFADDTAVLACSNCPNEASDFLQTGLQEIETWLSKWRIKTSVTKSVHVTFTLRRGDCPPVTLCNQQLPQEHCVKYLGIHLDRRLVWKQHIQKKREEINLKYRGLYWLLGRNSKLSVDNKLLIYEMLLKPIWTYGIQLWGSACDSNINIIQRVQNYILKQISNCPWFIKTSEIHEHLKIRTVKQEIKTWSMKYRKRLEMHPNKLATQLTTPDLINRLKRRQILSLDRHG

Uniprot

A0A2A4K8E7   A0A2A4K918   A0A1Y1M7E9   A0A1B6GPQ5   A0A2J7PVE7   A0A2J7R7D0   + More
A0A1B6KCY8   A0A1Y1JWM7   A0A0J7K4E0   A0A1Y1JXT3   A0A1Y1K0N4   A0A2A4IUM2   A0A2J7PVX3   A0A2J7R579   A0A2J7R4B1   A0A2J7QPI2   A0A2J7R2B7   A0A0J7K811   A0A2J7QB68   A0A1L8DIZ6   A0A0A9YN51   A0A0A9Z4E6   A0A034VFD2   A0A2P8Z520   A0A2J7R8R8   A0A2J7PSM7   A0A2J7R4U3   A0A2J7Q9Z1   A0A2J7PDM0   A0A1Y1LKN6   A0A0M4EWX7   A0A2J7PEB1   A0A2J7QES2   A0A2J7QQP1   A0A2J7RRU8   A0A023F780   A0A0A9YU04   A0A142LX26   A0A0A9YJ00   A0A2J7QAT1   A0A2J7PMN4   A0A2J7RQ52   A0A0J7MYU2   A0A2J7R098   A0A0J7K7J8   Q04135   A0A2J7RD70   A0A2J7Q0S7   Q6R811   Q961V7   Q24335   A0A069DYZ3   A0A023F705   A0A0A1WW72   R4G2P5   A0A2S2NI07   A0A2S2Q7E7   A0A2J7RC82   J9LYS0   A0A1B6EGD8   J9LDH1   A0A1B6D7J6   A0A352X8G4   X1XJ90   J9LBC4   A0A2S2QLY2   A0A2S2PNT5   A0A142LX49   A0A023F7D1   A0A0J7MT32   A0A023F700   X1XSU7   A0A069DZC5   A0A2S2N629   A0A069DW01   A0A0A9YSX4   X1XBW2   A0A2S2PYN7   A0A224X6T4   X1XH00   A0A0J7KBP6   X1WVQ4   A0A2S2N6Q7   A0A224X746   X1WK82   A0A2S2Q1W5   A0A2S2P0Y0   X1WZC2   A0A069DVA6   A0A2H8TKI9   X1WT24   A0A2S2P3X8   A0A2S2NPJ7   A0A2S2PH29   A0A023F754   A0A023F0I3   A0A1Y1KFR3   A0A023F6S4   A0A142LX53   A0A2S2N9P4  

Pubmed

28004739    25401762    25348373    29403074    25474469    25527032    + More
1705654    14745026    2441397    26334808    25830018    30148503   

EMBL

NWSH01000032    PCG80497.1    PCG80496.1    GEZM01038405    JAV81653.1    GECZ01005368    + More
JAS64401.1    NEVH01020963    PNF20308.1    NEVH01006736    PNF36716.1    GEBQ01030670    JAT09307.1    GEZM01101506    JAV52621.1    LBMM01014395    KMQ85192.1    GEZM01101509    JAV52620.1    GEZM01097906    JAV54051.1    NWSH01007753    PCG62823.1    NEVH01020940    PNF20481.1    NEVH01007393    PNF35987.1    NEVH01007578    PNF35646.1    NEVH01012089    PNF30491.1    NEVH01007841    PNF34974.1    LBMM01012078    KMQ86419.1    NEVH01016302    PNF25823.1    GFDF01007661    JAV06423.1    GBHO01041572    GBHO01041570    GBHO01010553    JAG02032.1    JAG02034.1    JAG33051.1    GBHO01041571    GBHO01005400    GBHO01005396    JAG02033.1    JAG38204.1    JAG38208.1    GAKP01017773    JAC41179.1    PYGN01000192    PSN51582.1    NEVH01006721    PNF37225.1    NEVH01021925    PNF19341.1    NEVH01007402    PNF35856.1    NEVH01016340    PNF25410.1    NEVH01026386    PNF14434.1    GEZM01053022    JAV74219.1    CP012527    ALC48130.1    NEVH01026106    PNF14658.1    NEVH01015305    PNF27092.1    NEVH01012084    PNF30905.1    NEVH01000598    PNF43535.1    GBBI01001658    JAC17054.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    KU543673    AMS38352.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01016327    PNF25684.1    NEVH01023979    PNF17579.1    NEVH01001347    PNF42959.1    LBMM01013518    KMQ85605.1    NEVH01008277    PNF34262.1    LBMM01012041    KMQ86458.1    X17551    CAA35587.1    NEVH01005295    PNF38784.1    NEVH01019963    PNF22185.1    AY508487    AAS13459.1    AY047531    AAK77263.1    M17214    AAA28508.1    GBGD01001540    JAC87349.1    GBBI01001692    JAC17020.1    GBXI01011604    JAD02688.1    GAHY01002426    JAA75084.1    GGMR01003787    MBY16406.1    GGMS01004444    MBY73647.1    NEVH01005885    PNF38441.1    ABLF02041861    GEDC01000337    JAS36961.1    ABLF02035448    GEDC01015644    JAS21654.1    DNOY01000259    HBE18313.1    ABLF02022943    ABLF02046958    ABLF02036794    GGMS01009480    MBY78683.1    GGMR01018428    MBY31047.1    KU543685    AMS38375.1    GBBI01001570    JAC17142.1    LBMM01018951    KMQ83660.1    GBBI01001699    JAC17013.1    ABLF02028354    ABLF02028357    ABLF02062343    GBGD01000880    JAC88009.1    GGMR01000005    MBY12624.1    GBGD01000799    JAC88090.1    GBHO01008295    JAG35309.1    ABLF02049474    GGMS01001277    MBY70480.1    GFTR01008261    JAW08165.1    ABLF02022879    LBMM01010106    KMQ87671.1    ABLF02023279    ABLF02041474    GGMR01000226    MBY12845.1    GFTR01008151    JAW08275.1    ABLF02041284    GGMS01002441    MBY71644.1    GGMR01010373    MBY22992.1    ABLF02020350    GBGD01000881    JAC88008.1    GFXV01002840    MBW14645.1    ABLF02015541    GGMR01011511    MBY24130.1    GGMR01006491    MBY19110.1    GGMR01016114    MBY28733.1    GBBI01001642    JAC17070.1    GBBI01003747    JAC14965.1    GEZM01084969    JAV60363.1    GBBI01001646    JAC17066.1    KU543687    AMS38379.1    GGMR01000857    MBY13476.1   

Proteomes

UP000218220    UP000235965    UP000036403    UP000245037    UP000092553    UP000007819    + More

PRIDE

Q04135    Q961V7    Q24335   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF12259   Baculo_F

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR022048   Envelope_fusion-like       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A2A4K8E7   A0A2A4K918   A0A1Y1M7E9   A0A1B6GPQ5   A0A2J7PVE7   A0A2J7R7D0   + More
A0A1B6KCY8   A0A1Y1JWM7   A0A0J7K4E0   A0A1Y1JXT3   A0A1Y1K0N4   A0A2A4IUM2   A0A2J7PVX3   A0A2J7R579   A0A2J7R4B1   A0A2J7QPI2   A0A2J7R2B7   A0A0J7K811   A0A2J7QB68   A0A1L8DIZ6   A0A0A9YN51   A0A0A9Z4E6   A0A034VFD2   A0A2P8Z520   A0A2J7R8R8   A0A2J7PSM7   A0A2J7R4U3   A0A2J7Q9Z1   A0A2J7PDM0   A0A1Y1LKN6   A0A0M4EWX7   A0A2J7PEB1   A0A2J7QES2   A0A2J7QQP1   A0A2J7RRU8   A0A023F780   A0A0A9YU04   A0A142LX26   A0A0A9YJ00   A0A2J7QAT1   A0A2J7PMN4   A0A2J7RQ52   A0A0J7MYU2   A0A2J7R098   A0A0J7K7J8   Q04135   A0A2J7RD70   A0A2J7Q0S7   Q6R811   Q961V7   Q24335   A0A069DYZ3   A0A023F705   A0A0A1WW72   R4G2P5   A0A2S2NI07   A0A2S2Q7E7   A0A2J7RC82   J9LYS0   A0A1B6EGD8   J9LDH1   A0A1B6D7J6   A0A352X8G4   X1XJ90   J9LBC4   A0A2S2QLY2   A0A2S2PNT5   A0A142LX49   A0A023F7D1   A0A0J7MT32   A0A023F700   X1XSU7   A0A069DZC5   A0A2S2N629   A0A069DW01   A0A0A9YSX4   X1XBW2   A0A2S2PYN7   A0A224X6T4   X1XH00   A0A0J7KBP6   X1WVQ4   A0A2S2N6Q7   A0A224X746   X1WK82   A0A2S2Q1W5   A0A2S2P0Y0   X1WZC2   A0A069DVA6   A0A2H8TKI9   X1WT24   A0A2S2P3X8   A0A2S2NPJ7   A0A2S2PH29   A0A023F754   A0A023F0I3   A0A1Y1KFR3   A0A023F6S4   A0A142LX53   A0A2S2N9P4  

PDB

5G2X     E-value=0.0116188,     Score=91

KEGG

NA   

GO

GO:0003964  

Length:

397

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.12681

Exp number, first 60 AAs:

0.02088

Total prob of N-in:

0.01005

outside

1  -  397

 

 

Pi

185.767571

Theta

125.956493

Tajima's D

1.457103

CLR

0.763327

CSRT

0.776011199440028

Interpretation

Uncertain