SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16454  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013814
Annotation
PREDICTED:_RNA-binding_protein_5-A-like_isoform_X2_[Papilio_xuthus]
Location
Bomo_Chr28(-):10385335-10390457      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.734
 

Sequence

CDS
ATGTCTTGGCGAAGTCGAGAGGAGCGCTGCTCGAGGTGGGACACCAACAAATGGGAACTCCGCGATCGGTCGCCTGTATGGGAGCCTAGGAACGTCAGCCCTGAGTGCAGGTCGCCATCCCGACACCGACACTCGCATGATAGACGGCCTCGTCACGAGCGCGACTTTCGGCGTGACCGCCACGACCGGGATCGCGACCGTGACCGAGAACGCGACAGAAAACGGTACGAGGAAGCGCCCGCGCCCCCCTCGCCGCCCGTCATCAGCGATGACAAAAAGAGCTCACGGTCTAGTAGTCGATCCGATAGTCGTGAGAGGGACAGGTCTGATATGGAAATAGAAAAGGACAAGCACCAGGATGAGGTCTGTTACCGTAGAACTTGTAATGGGAAAAGATCGGAGGGTGTAGTTTATGGAGGTGATGGGGATCGTAACGGTGTAGTCGAAACACCTGGCATCACAAAGAGGTTACTCTTTAGGAGGCTAGATGCTTTGACTACTGAAGAAAATATATTGGAAGAGCTTAAACTACGTTGCAGTAAAGAAGTTCTAGAGTTAATTGTAGGTATTTCAATTGGTAGAGAAACTTTAACAGGTGCATCAAAGTGTCTCGCCTACATCAATTTCAACTCCATAGCAGATTCTACAACAGCACATACAGAGTTGGTGAATCTCCAACCACCATTAAGGATTGACGGTCGAGAAGTGCTTATAAGCTTTTACAATGAACCTAAAAAAATTGTTAAACCAACACAAGTTGACTATACGTCATACTACTCTCAAATGTCTTCGTACAGTGGTGCAACAACTCAAGCAATGTCTGAGGCTGATCGAGTCAATGCAGCTGCTGCAGTAGCTCAGTCTGCTATATCGGCAGCCCAGGCTAGACAGCTATCATGGACGCCAGTTGGTGCTGTACCTTTCACTGGTACTACCCAAACTACAAAAACAAATGTACCCATAGGTGATGGGAAGACAGTTTATCCTGCCCCAGATGTGAGAACATTCATGTATGATGAGTCATCTGGTTACTATTATGACCCGTCAACTTGTTTATACTATGATGGGAAGACACAATATTTTTATAATAGTCAAATCAGTCAATATATGTATTGGGATGGTAAAACAAACACTTATATTGCTGCAACACAGGCTCAGAATGCTGAACAAAACAAACAAAGAGAGGCCAAGGAGCCTGATGAAAAGAAAAGGAGAGACAAAGAAGACAAAGTTAAAGTAGCTAAAAAGATAGCTAAGGATATGGAAAGATGGGCACGGACTCTAAATCAAAAGAAAGAGAATGCTCGGAGTAACTTTGTTATGGAACAGCCAACTGACACAAGTGCTAGCAAAGGCTCAGCAGACATTGGTTTTTCAGTACTAGGAGCTGGACCATCATTAACTCATGTAAGAGAAATATCCCCACCTCCCAACACAGATGAATTCTTGGTCAAAAAGATCTCAGAACCAGTATTTGATAATGATGATGACATTATTGACTGGGACAAATTAACCTGCTTGTTATGCAAAAGGAAATTCCCTTCTGTAGAAGTGTTGAATAAGCATAAAGTTATGTCAGACTTGCACAAACAAAATCTAGTTGAATTTAGGAAGAAGAATGACTTGATTCCACAGATGAATGGTTATAGAGACAGGGCAGCTGAGCGACGTATGAAATTTGGTGAAGATGAGCCTCCAATGATAAGAAAACGTTATGAGCCTTCTGAACCAATAGGTCCACCCATTAACCCGCACCCACCTCCAAATGTAGTAGATACAATAGGAGGTAAAATGCTGCAAAAAATGGGCTGGTCGGAAGGTCGAGGTTTAGGTAAGACTGAGCAGGGACGAATAGCTCCCATAGAAGCAGAACAGAGGCCAAGTTTAGCTGGTCTGGGGCAGAAAAGAGATATAAAGAAGTTGTTGGACAAGAAGAAGGGAAATAGATTCGACCTGGAATTCTACAACGCTCCCGTCACACGCGTATTCGACAATCGAGTCTACGCGCGAAGCTGGAACCACGTGCCAAACAAAATATTAAAAAGTACTTCATTTTATACTCGTTGGATCGGAAATGAATTGATCAAACGCCATTTTAAAAATATTTAG
Protein
MSWRSREERCSRWDTNKWELRDRSPVWEPRNVSPECRSPSRHRHSHDRRPRHERDFRRDRHDRDRDRDRERDRKRYEEAPAPPSPPVISDDKKSSRSSSRSDSRERDRSDMEIEKDKHQDEVCYRRTCNGKRSEGVVYGGDGDRNGVVETPGITKRLLFRRLDALTTEENILEELKLRCSKEVLELIVGISIGRETLTGASKCLAYINFNSIADSTTAHTELVNLQPPLRIDGREVLISFYNEPKKIVKPTQVDYTSYYSQMSSYSGATTQAMSEADRVNAAAAVAQSAISAAQARQLSWTPVGAVPFTGTTQTTKTNVPIGDGKTVYPAPDVRTFMYDESSGYYYDPSTCLYYDGKTQYFYNSQISQYMYWDGKTNTYIAATQAQNAEQNKQREAKEPDEKKRRDKEDKVKVAKKIAKDMERWARTLNQKKENARSNFVMEQPTDTSASKGSADIGFSVLGAGPSLTHVREISPPPNTDEFLVKKISEPVFDNDDDIIDWDKLTCLLCKRKFPSVEVLNKHKVMSDLHKQNLVEFRKKNDLIPQMNGYRDRAAERRMKFGEDEPPMIRKRYEPSEPIGPPINPHPPPNVVDTIGGKMLQKMGWSEGRGLGKTEQGRIAPIEAEQRPSLAGLGQKRDIKKLLDKKKGNRFDLEFYNAPVTRVFDNRVYARSWNHVPNKILKSTSFYTRWIGNELIKRHFKNI

Summary

Uniprot
H9JWA0   A0A2H1VGS1   A0A2W1BDS1   A0A2A4JZN3   A0A3S2P546   A0A194QKA6   + More
A0A0N0PET7   A0A212EM11   A0A0L7L1L7   K7IPW6   A0A232EXE3   A0A0B7APJ4   A0A0T6B1B4   A0A0B7ALB4   A0A0B7APC0   A0A3Q1KHL9  
Pubmed
19121390    28756777    26354079    22118469    26227816    20075255    + More
28648823   
EMBL
BABH01029395    ODYU01002498    SOQ40053.1    KZ150111    PZC73342.1    NWSH01000325    + More
PCG77457.1    RSAL01000382    RVE42047.1    KQ459054    KPJ03891.1    KQ459670    KPJ20504.1    AGBW02013941    OWR42540.1    JTDY01003664    KOB69191.1    NNAY01001758    OXU23013.1    HACG01034975    CEK81840.1    LJIG01016349    KRT80869.1    HACG01034969    CEK81834.1    HACG01034976    CEK81841.1   
Proteomes
UP000005204    UP000218220    UP000283053    UP000053268    UP000053240    UP000007151    + More
UP000037510    UP000002358    UP000215335    UP000265040   
PRIDE
H9JWA0   
Pfam
PF01585   G-patch        + More
PF17780   OCRE
PF00076   RRM_1
PF00641   zf-RanBP
Interpro
IPR041591   OCRE        + More
IPR000467   G_patch_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR035979   RBD_domain_sf       
IPR000504   RRM_dom       
IPR036443   Znf_RanBP2_sf       
IPR013087   Znf_C2H2_type       
IPR001876   Znf_RanBP2       
IPR034993   RBM5_RRM2       
IPR033094   RBM5       
SUPFAM
SSF54928   SSF54928        + More
SSF90209   SSF90209       
Gene 3D
3.30.70.330    
CDD
cd12755  RRM2_RBM5
ProteinModelPortal
H9JWA0   A0A2H1VGS1   A0A2W1BDS1   A0A2A4JZN3   A0A3S2P546   A0A194QKA6   + More
A0A0N0PET7   A0A212EM11   A0A0L7L1L7   K7IPW6   A0A232EXE3   A0A0B7APJ4   A0A0T6B1B4   A0A0B7ALB4   A0A0B7APC0   A0A3Q1KHL9  
PDB
2MXW     E-value=1.43078e-16,     Score=213

Ontologies

KEGG
101743253    K13094 RNA-binding protein 5/10 | (RefSeq) RNA-binding protein 5
GO
GO:0003676   GO:0003723   GO:0046872   GO:0000166   GO:0016021   GO:0003824   GO:0043565   GO:0005839   GO:0051603   GO:0046835   GO:0006281   GO:0006259  
PANTHER
PTHR13948:SF21  

Topology

Length:
702
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00106
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00136
outside
1  -  702
 
 

Population Genetic Test Statistics

Pi
151.664197
Theta
146.215414
Tajima's D
-0.80439
CLR
1941.8513
CSRT
0.169791510424479
Interpretation
Uncertain
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