Gene

KWMTBOMO16448

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr28(+):10270838-10274782      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.073 PlasmaMembrane   Reliability : 1.175

CDS

ATGGCAGAGATTAAGGTGACGGGCCTGGATGAGTGCGCTACTCAGATGGAAGTGGCCGCCGCTATTGCATCGCAGGGCAACTGCGCCCTCGCACAAGTGAAGGTGGGAGAGCTCCGGAGTTGTTACTCTGGGGCTTTCACCGTGTGGGCGCGTTGCCCCGTGCAGGCGGCCACCCTGTTGGCCACGCCTCCACAAGGTCGGCCTGCCGACTCGCCGGGGAGGCTGCGCGTGGGTTGGGTGATAGCCCACGTGCAGCTGCAGGAGGCACGTCCATGGCGATGCCTCCGGTGCTTTGGCACCGGGCACGGCCTCGCCAAGTGCCCGTCGGCTGTGGATCGCAGCGGACTTTGCTTCCGTTGCTGTCAGCCCGGACACAAGGCAGCCTCCTGCACCGCTGCAACACCGCACTGCGTGTTGTGTGATGCAGCGAAACGGCGGGCCGATCATCGGGCCGGGGGTCCGGCCTGTCTTTCCGCACCCTCCTCCACAAAGAGGAGGCGTGGCGGGAAAAAGAAGAAAAAGTCAGAGGAAGAGCCGGCTGCGTGTGAAACAGCCGGCCCGTCAGTTCCCGCCGCGGCCGTCGGGCCGCAAGGCGGGACGGAAGACGAGGGAGCGATGGACGATCTCCTCGTCCATACCATGGCGGAGTGGTTCATCGACATCGCGATCGTCGCGGAGCCATACTTCGTACCTTCCGACCGGGAGGACTCCTGGGCCGGAGATGTCGATGGCTCCGTGGCGATCGTGATGCGACAGTCGGCGGCGTTACCCCCCCTTGGAATGGTGGCCAGGGGATCTGGGTACGTCGTAGTTAGGGTCGACGAAACCGTCGTGATCGGGGTGTACTTCTCTCCGAACAGGAGTCTCGCCGAGTTCGAGCAGTTCCTGGGTGGGCTCGAGGCGTTGGTTCATCGCTTCGAGTCTCGCCCAGTGATACTAGCGGGGGACCTCAACGCTAAATGTACGGCGTGGGGATCCCCCCGCACGGACTCGCGTGGCGAATTCCTGTCGGAGTGGGCTTTCGCGACCGGCCTCTGTCTCCTAAACAGAGGTTCGGTCGCGACCTGCGTGCGGTGGAACGGGGAATCACACGTGGACGTATCGTTCGCGTCTCCGTCCGCCGCGCGCCGTGTCTGTGGTTGGCGTGTCCTCGAGGGGGCGGAGACGCTCTCGGATCATCGGTTCGTCCGATTTGAGCTCTCCGTTTCCACCTCGTTGAACGCGCCGGCCGAAGACGCCCGCGGCGAGGAGGAGCTCCCGCGTAGTGCTCCCCGATCATTCCCGCGATGGGCACTGAAGCGCCTGAACAAGGTGCTTGCGGTGGAGGCGGCCACAGTGGCCGCGTGGGCGCCGATGCCCGCGCGTCTAGTGGACGTGGAGTTGGAGGCCGAATGGTTCCGGGGTACGATGCGTCGCGTCTGCGATGCTGCGATGCCCCGGGTCAGCGGTCGCGCTCCGCGTGGCGGTGCGTACTGGTGGACGCCCGAGATCGCGCTCCTCCGAGAGGAGTGCGTGCGGGCGCGCCGCCGAAGCGCCCGCCACCGCCGTCGCCGCCTTCGCGATGCGGACTTCGCGGAGGTGGCGACCCGCCTGCATGCCGACTGCCGTCAGAAGCAGGAGGCACTGCGGCGGGCCATCGGCGAGGCCAAGTCTCAGAGCATGAAGACGCTCCTGGAGACGCTTGACCAAGATCCTTGGGGGCGCCCGTACCAAACGGTCCGCAAGAAATTGCGGCCGTGGGCGCTCCCGGTGACGGAACGTCTCCAGCCTCAGCAGCTGCGGGAGATTGTCTCCGGGCTGTTCCCGCGGATGGAGAGGGGCTTCGAGCCCCCTTCCATGGGCGCGCCACCACGCAGTAGCGTGAGCGGTGATGCCCCTGCTGAGGTGGTCCCTCCGAGCATCTCGGAGGAGGAGATTCGTGCGGCCGTGTCGAGGATGCGGAGGAAGGACGCGGCCCCCGGCCCTGACGGTGTTCACGGCCGGGTCTGGGATTTGGCCTTCGGTGCCCTTGGGGACCGACTCGTGCGGCTCTATGAAGCCTGCCTCGAGTCGGGACGGTTTCCGAAGCAGTGGAAGACGGGCAGACTTGTTCTGCTAAGGAAGGAGGGACGCCCCGCGGACTCACCTGCGGGATATCGTCCCATCGTGCTGCTGGACGAGGCTGGAAAATTGCTCGAGCGGGTGGTGGCCGCCCGCATCGTCCAGCATCTGACGGGGGTGGGTCCCGATCTGTCAGCGGAGCAGTTCGGATTCAGGGAGGGCCGCTCGACCATCGACGCGGTGATGCGCGTGCGTGCCCTCTCTGATGAGGCTGTCGGCCAGGGCGGGGTTGCACTGGCGGTGTCCCTTGACATCGCCAACGCGTTCAACACCTTGCCCTGGTCGGTGATCGCAGGGGCGCTGGAGTATCACGGTGTCCCTGCGTATCTCCGTCGGCTGATCGGGTCCTACCTCGAGGACAGGTCGGTCGTGTGCACCGGGCACGGTGGGGCGGTGCTCCGCTTCCCCGTCCAGCGCGGTGTTCCACAGGGGTCGGTCCTTGGCCCTCTCTTGTGGAACATCGGCTACGACTGGGTCCTGCGTAGCGCCCTAAGTGCTCCTCTTCCGGGTCTGAGCGTAGTTTGTTACGCGGACGACACTTTGGTCGTGGCCCGGGGGAGGGACTTGCGAGAGTCTGCCCGTCTTTCCTGTGCGGGGGTGGCCTTCGTCATCGGCAGGATCCGAAGGCTGGGTCTGGAGGTGGCGCTCGATAAATCCCAGGCCCTGTTGTTTCACGGGGCCCGGAGAGCGCCGCCTCAGGGGGCCCACCTCGTGATCGGAGGCGTTCGCGTCGAGATCGAGGCAACCGGGTTGCGGTACCTCGGTCTCGTACTGGACGGTCGTTGGAGCTTCCGCGCTCACTTTGAAAGATTAGGTCCCCGACTGATGGCGGCTGCCGGCTCGCTGAGTCGGCTGTTGCCGAACGTCGGGGGGCCTGACTTGGTGGTGCGCCGCCTCTACACGGGGGTGGTGCGGTCGATGGCACTGTACGGGGCTCCCGTGTGGTGCCACGCCCTGACCCGCGACAACGTTGCGGCGTTGCGACGTCCGCAGCGCGCGATTGCGGTCAGGGCGGTTCGTGGATACCGCACCGTCTCGTTTGAGGCGGCGTGCGTGCTAGCTGGGACGCCTCCCTGGGACCTGGAAGCGGAGGCGCTCGCTGCGGATTACGCGTGGCGATGCGATCTCCGCTCCAGGGGGGAGCCGCGTCCCGGGGCGGCGGAAGTTCGAGCGCGGAAGCTTCAATCTCGGCGTGCCGTGCTCGAGGCGTGGTCTCGCCGCCTGGCGGACCCCGCCTACGGGCGACGGACCGTCGAGGCGATCCGCCCGGTCCTCTCGGAATGGGTGAATCGCGACCGAGGACGTCTCACCTTCCGGGCGACACAGGTGCTCACGGGACACGGCTGTTTCGGTCGCTACCTGCACCTCGTCGCCCGGAGGGAGCCGACGCCGAAGTGCCACCACTGCAGTGGCTGCAACGAGGACACGGCGGAGCACACGCTCGCGTACTGCCCCGCTTTCGTGGAGCAGCGCCGCGTCCTCGTTGCAAATATAGGACCGGACTTGTCGCTTCCGACCGTCGTGGCTACGATGCTCGGCAGCGACGAGTCCTGGCAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGGCGGAACGGGAGAGGGAGAGCTCTTCTTCCCTCTCGGCGCCGTGCCGCCGCCGTCGAGCCGGGGTTCGGAGGAGGGCGTTTGTCCAGCTCCAGCCCCTATGA

Protein

MAEIKVTGLDECATQMEVAAAIASQGNCALAQVKVGELRSCYSGAFTVWARCPVQAATLLATPPQGRPADSPGRLRVGWVIAHVQLQEARPWRCLRCFGTGHGLAKCPSAVDRSGLCFRCCQPGHKAASCTAATPHCVLCDAAKRRADHRAGGPACLSAPSSTKRRRGGKKKKKSEEEPAACETAGPSVPAAAVGPQGGTEDEGAMDDLLVHTMAEWFIDIAIVAEPYFVPSDREDSWAGDVDGSVAIVMRQSAALPPLGMVARGSGYVVVRVDETVVIGVYFSPNRSLAEFEQFLGGLEALVHRFESRPVILAGDLNAKCTAWGSPRTDSRGEFLSEWAFATGLCLLNRGSVATCVRWNGESHVDVSFASPSAARRVCGWRVLEGAETLSDHRFVRFELSVSTSLNAPAEDARGEEELPRSAPRSFPRWALKRLNKVLAVEAATVAAWAPMPARLVDVELEAEWFRGTMRRVCDAAMPRVSGRAPRGGAYWWTPEIALLREECVRARRRSARHRRRRLRDADFAEVATRLHADCRQKQEALRRAIGEAKSQSMKTLLETLDQDPWGRPYQTVRKKLRPWALPVTERLQPQQLREIVSGLFPRMERGFEPPSMGAPPRSSVSGDAPAEVVPPSISEEEIRAAVSRMRRKDAAPGPDGVHGRVWDLAFGALGDRLVRLYEACLESGRFPKQWKTGRLVLLRKEGRPADSPAGYRPIVLLDEAGKLLERVVAARIVQHLTGVGPDLSAEQFGFREGRSTIDAVMRVRALSDEAVGQGGVALAVSLDIANAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEDRSVVCTGHGGAVLRFPVQRGVPQGSVLGPLLWNIGYDWVLRSALSAPLPGLSVVCYADDTLVVARGRDLRESARLSCAGVAFVIGRIRRLGLEVALDKSQALLFHGARRAPPQGAHLVIGGVRVEIEATGLRYLGLVLDGRWSFRAHFERLGPRLMAAAGSLSRLLPNVGGPDLVVRRLYTGVVRSMALYGAPVWCHALTRDNVAALRRPQRAIAVRAVRGYRTVSFEAACVLAGTPPWDLEAEALAADYAWRCDLRSRGEPRPGAAEVRARKLQSRRAVLEAWSRRLADPAYGRRTVEAIRPVLSEWVNRDRGRLTFRATQVLTGHGCFGRYLHLVARREPTPKCHHCSGCNEDTAEHTLAYCPAFVEQRRVLVANIGPDLSLPTVVATMLGSDESWQAMLDFCESTISQKEAAERERESSSSLSAPCRRRRAGVRRRAFVQLQPL

Uniprot

Q868Q4   Q8MY31   Q8MY27   Q8MY35   Q8MY33   A0A0J7N1D9   + More
O01419   A0A2W1C3J5   A0A0J7KQK3   A0A3S2LNH8   A0A0J7N0R3   A0A0J7KJG6   A0A0J7KIY5   A0A0J7KFH2   A0A0J7KRB8   A0A0J7NFZ0   A0A0J7KF37   A0A0J7KIM6   A0A0J7KJH4   A0A0J7KYD2   A0A0J7K3F1   A0A0J7KPR0   A0A0J7KF91   A0A0J7MY17   A0A0J7KF40   A0A0J7KQY4   A0A0J7N8R4   A0A0J7MWN5   A0A0J7NAV8   J9JWJ3   A0A2S2PEZ7   J9KJG8   J9LVU7   X1WZ64   A0A2S2NQQ6   X1WJY4   A0A2H8TIE5   J9KM84   T1DCM0   A0A2H8TR36   J9KNN8   W8ADE4   W8ANK7   A0A2M4BBV9   A0A2M4BC01   A0A142LX45   Q868S4   A0A0J7NC28   T1DG89   T1DG59   A0A0J7KIS5   A0A2M4ADW9   J9KWM9   A0A2M4BC28   J9KT61   A0A2S2PRL8   F7IYU8   A0A0J7KMG5   X1WXT5   A0A2S2P7D1   A0A2M4CS98   F7IYV5   A0A139W940   D6WC19   J9LA43   J9KUM6   J9LQQ1   A0A034WR48   A0A2M4BDI3   A0A139W9B3   A0A2M4CSA9   A0A2M4BC18   A0A2S2NJ82   J9L0J0   A0A224XIZ2   A0A2M4CJ33   A0A2M4BC24  

Pubmed

12644555    9092665    28756777    24330624    24495485    25527032    + More
18362917    19820115    25348373   

EMBL

AB090825    BAC57926.1    AB078931    BAC06456.1    AB078935    BAC06462.1    + More
AB078929    BAC06452.1    AB078930    BAC06454.1    LBMM01012027    KMQ86470.1    D85594    BAA19776.1    KZ149896    PZC78733.1    LBMM01004272    KMQ92618.1    RSAL01003504    RVE40273.1    LBMM01012412    KMQ86235.1    LBMM01006671    KMQ90407.1    LBMM01006954    KMQ90166.1    LBMM01008278    KMQ89009.1    LBMM01003988    KMQ92922.1    LBMM01005474    KMQ91485.1    LBMM01008448    KMQ88867.1    LBMM01007036    KMQ90099.1    LBMM01006657    KMQ90417.1    LBMM01002052    KMQ95336.1    LBMM01015025    KMQ84953.1    LBMM01004634    KMQ92224.1    LBMM01008445    KMQ88871.1    LBMM01014122    KMQ85315.1    LBMM01008422    KMQ88894.1    LBMM01004262    KMQ92649.1    LBMM01008226    KMQ89040.1    LBMM01015285    KMQ84870.1    LBMM01007425    KMQ89740.1    ABLF02013358    ABLF02013361    ABLF02054869    GGMR01015159    MBY27778.1    ABLF02041886    ABLF02034925    ABLF02011183    ABLF02041884    GGMR01006838    MBY19457.1    ABLF02011238    GFXV01002090    MBW13895.1    ABLF02018942    ABLF02041885    GALA01001777    JAA93075.1    GFXV01003903    MBW15708.1    ABLF02023257    GAMC01020519    GAMC01020515    JAB86040.1    GAMC01020517    JAB86038.1    GGFJ01001369    MBW50510.1    GGFJ01001370    MBW50511.1    KU543683    AMS38371.1    AB090815    BAC57906.1    LBMM01006996    KMQ90130.1    GALA01001776    JAA93076.1    GALA01000302    JAA94550.1    LBMM01006977    KMQ90149.1    GGFK01005660    MBW38981.1    ABLF02011927    GGFJ01001439    MBW50580.1    ABLF02009073    ABLF02030702    ABLF02042963    GGMR01019493    MBY32112.1    AB593321    BAK38639.1    LBMM01005465    KMQ91492.1    ABLF02004854    ABLF02041317    GGMR01012748    MBY25367.1    GGFL01004044    MBW68222.1    AB593325    BAK38646.1    KQ972691    KXZ75806.1    KQ971309    EEZ99146.1    ABLF02018098    ABLF02041557    ABLF02030663    ABLF02041312    GAKP01002292    JAC56660.1    GGFJ01001727    MBW50868.1    KQ972544    KXZ75869.1    GGFL01004046    MBW68224.1    GGFJ01001453    MBW50594.1    GGMR01004600    MBY17219.1    ABLF02027248    GFTR01008427    JAW07999.1    GGFL01001192    MBW65370.1    GGFJ01001454    MBW50595.1   

Proteomes

UP000036403    UP000283053    UP000007819    UP000007266   

PRIDE

Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF01553   Acyltransferase
PF01421   Reprolysin
PF00098   zf-CCHC
PF00075   RNase_H

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR012337   RNaseH-like_sf       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       
IPR000663   Natr_peptide       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     3.40.390.10     3.30.420.10    

ProteinModelPortal

Q868Q4   Q8MY31   Q8MY27   Q8MY35   Q8MY33   A0A0J7N1D9   + More
O01419   A0A2W1C3J5   A0A0J7KQK3   A0A3S2LNH8   A0A0J7N0R3   A0A0J7KJG6   A0A0J7KIY5   A0A0J7KFH2   A0A0J7KRB8   A0A0J7NFZ0   A0A0J7KF37   A0A0J7KIM6   A0A0J7KJH4   A0A0J7KYD2   A0A0J7K3F1   A0A0J7KPR0   A0A0J7KF91   A0A0J7MY17   A0A0J7KF40   A0A0J7KQY4   A0A0J7N8R4   A0A0J7MWN5   A0A0J7NAV8   J9JWJ3   A0A2S2PEZ7   J9KJG8   J9LVU7   X1WZ64   A0A2S2NQQ6   X1WJY4   A0A2H8TIE5   J9KM84   T1DCM0   A0A2H8TR36   J9KNN8   W8ADE4   W8ANK7   A0A2M4BBV9   A0A2M4BC01   A0A142LX45   Q868S4   A0A0J7NC28   T1DG89   T1DG59   A0A0J7KIS5   A0A2M4ADW9   J9KWM9   A0A2M4BC28   J9KT61   A0A2S2PRL8   F7IYU8   A0A0J7KMG5   X1WXT5   A0A2S2P7D1   A0A2M4CS98   F7IYV5   A0A139W940   D6WC19   J9LA43   J9KUM6   J9LQQ1   A0A034WR48   A0A2M4BDI3   A0A139W9B3   A0A2M4CSA9   A0A2M4BC18   A0A2S2NJ82   J9L0J0   A0A224XIZ2   A0A2M4CJ33   A0A2M4BC24  

PDB

1WDU     E-value=5.43906e-09,     Score=150

KEGG

105841441    no KO assigned | (RefSeq) uncharacterized LOC105841441

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676   GO:0004523   GO:0005179   GO:0005576   GO:0003824   GO:0043565   GO:0005839   GO:0051603   GO:0046835   GO:0006281   GO:0006259  

Length:

1267

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0157999999999999

Exp number, first 60 AAs:

0.00275

Total prob of N-in:

0.00020

outside

1  -  1267

 

 

Pi

19.780531

Theta

10.551364

Tajima's D

0

CLR

307.52741

CSRT

0.380930953452327

Interpretation

Uncertain