Silkworm Genome Informatics Database

Gene

KWMTBOMO16444

Pre Gene Modal

BGIBMGA013820

Annotation

PREDICTED:_ATP-sensitive_inward_rectifier_potassium_channel_11-like_[Papilio_xuthus]

Location

Bomo_Chr28(-):10131102-10149543 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.508

CDS

ATGGAGGCCAAAGATATACTCAATAATTCAATGGAAAAAGACTCTTTGAAAGCTCAAATGGAATACGACGAAATAGATAAACTTTACGATGAGTGCCTAGAATATTTGAAAGAAGCCAAAATAGACGTTCAAGAAGAAGACCAAGCTCAACACGAAGACCAAGTTGAACAAGAAGAATACATAGAAGACCACGAAAGAATAAAAGAACATAGTGCTAATTCTAGAAACTCAACAGAAACACCAAAAACATCTATCAAGTTGGAAAACGAACTGAATTCGACAGGCAGTCTGGTTTCTGTAATTTCCGAACCAAAATCTGAGAGACTAAGGAAGCTATCGCAGCAGCTGCCTAAAATTATAATCACTCAGAGTAATACAAGTTTGAACTTTAAAAGGTTAGAGGAAGCAGTCGAAATTCCAGTTAAAATAGAGAAGAAAAAGATAAATAGGAATCCTCCGGCTATCCGCAATAAGACTGTTTACGGAGATTTCCCCAAAAGACTCGTCTCCAAGAACGGGATGGAGAACATCGCTCTCATCAAAAACGTACCTTTTGAAAAAATCAGACTCCTCAACGACACCTTCCATACTTTGATCAATCTTCGATGGCGTTGGATCGTCATCGGTACAATGGTGGTCCATTTCGCCATTTGGCTGGTCTTCGCGGTATTCTGGTATATATCAGCATTGGCCCACTACGACTTCGAGCCAGATCCACCGAAGAAGACTTGCGTGACGGGTGGCAAAGATTTCGTGACGATATTCTTGGCATCTGTTGAGGCTCAGACAACGATAGGCTTTGGAGATCGCGCCATAGACGAAGAATGTCCTGAATCTATCTTCCTATTCATCATGCAGTTGATCCTCGGCACCGGGCTATCCGGGGTACTGACATGTGTGGTATACGCAAAACTAACGCGCCCAGAGAAACTGTCTCGCGATGGAGTTGGTTTCAGTAAGAAGGCTGTGATCAGCATGCGCGACGGTCAGCTATGTCTGATGATGAGGGCCTGGGACCTCAACTACGACCACATCATCTGCTCAGAATTCTCAGCACATTTCATAACAACCCACAGGACCAAAGAAGGTGAGGTGTTGCGGTATTACGCCAGGCCTATGGCGCTCCAGCAGCGACAGTTCCCTCTGTGGCCAGTCACTATAGTCCACATTATTGATGCCGGCAGCCCTCTATATGAGTATACTCCAGAAGCTCTGGCGAATAGCAGCTATGAGATTACTTTGAGCCTGAAGGGGGCATCAGCATCAATGGGAACATTTACACAGAGTCAAACGTCTTATCTGCCACGGGAAGTCGTGTGGGGACATAGATTCAAACCAGTTGTCAGATATGACGGCAGAAAACAGAAGTACGTGATTGAAGAGAAGAAACTGGACGCGACAGAGCCTGTTGATACTCCCTACTGTAGTGCCAAGGAATTACACAGTACATCGAAGGATAGCTGCTCGACCCCACGCCCGTGTACTCCAAGCTCCTTCTGCGAAAAGATCTCTGCATTCCAACTGGAAAGATCATCGTCTTTCAGAAAGAAGACCACGGCATCATGA

Protein

MEAKDILNNSMEKDSLKAQMEYDEIDKLYDECLEYLKEAKIDVQEEDQAQHEDQVEQEEYIEDHERIKEHSANSRNSTETPKTSIKLENELNSTGSLVSVISEPKSERLRKLSQQLPKIIITQSNTSLNFKRLEEAVEIPVKIEKKKINRNPPAIRNKTVYGDFPKRLVSKNGMENIALIKNVPFEKIRLLNDTFHTLINLRWRWIVIGTMVVHFAIWLVFAVFWYISALAHYDFEPDPPKKTCVTGGKDFVTIFLASVEAQTTIGFGDRAIDEECPESIFLFIMQLILGTGLSGVLTCVVYAKLTRPEKLSRDGVGFSKKAVISMRDGQLCLMMRAWDLNYDHIICSEFSAHFITTHRTKEGEVLRYYARPMALQQRQFPLWPVTIVHIIDAGSPLYEYTPEALANSSYEITLSLKGASASMGTFTQSQTSYLPREVVWGHRFKPVVRYDGRKQKYVIEEKKLDATEPVDTPYCSAKELHSTSKDSCSTPRPCTPSSFCEKISAFQLERSSSFRKKTTAS

Similarity

Belongs to the inward rectifier-type potassium channel (TC 1.A.2.1) family.

Uniprot

H9JWA6 A0A194QG25 A0A3S2LVJ1 A0A212F1I4 A0A0N1IIZ3 A0A0L7KNH9 + More

Pubmed

19121390 26354079 22118469 26227816

EMBL

BABH01029371 BABH01029372 BABH01029373 KQ459054 KPJ03905.1 RSAL01000004 + More
RVE54682.1 AGBW02010886 OWR47573.1 KQ460047 KPJ18009.1 JTDY01007943 KOB64842.1

Proteomes

UP000005204 UP000053268 UP000283053 UP000007151 UP000053240 UP000037510 + More

PRIDE

H9JWA6

Pfam

PF17655 IRK_C + More
PF01007 IRK

Interpro

IPR016449   K_chnl_inward-rec_Kir        + More
IPR040445   Kir_TM
IPR041647   IRK_C
IPR013518   K_chnl_inward-rec_Kir_cyto
IPR014756   Ig_E-set

SUPFAM

SSF81296 SSF81296

Gene 3D

2.60.40.1400

ProteinModelPortal

H9JWA6 A0A194QG25 A0A3S2LVJ1 A0A212F1I4 A0A0N1IIZ3 A0A0L7KNH9 + More

PDB

3SPI E-value=6.9816e-50, Score=499

KEGG

101742197 no KO assigned | (RefSeq) G protein-activated inward rectifier potassium channel 3-like

GO

GO:0005242 GO:0034765 GO:0016021 GO:0006813 GO:0005244 GO:0003824 GO:0043565 GO:0005839 GO:0051603 GO:0046835 GO:0006281 GO:0006259

PANTHER

PTHR11767

Subcellular location

Membrane

Length:

521

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

46.09138

Exp number, first 60 AAs:

0

Total prob of N-in:

0.96232

inside

1 - 204

TMhelix

205 - 227

outside

228 - 280

TMhelix

281 - 303

inside

304 - 521

Pi

323.13722

Theta

169.699448

Tajima's D

3.109769

CLR

0.095996

CSRT

0.984000799960002

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics