SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16440
Pre Gene Modal
BGIBMGA013823
Annotation
PREDICTED:_ELAV-like_protein_2_[Papilio_xuthus]
Location in the cell
Mitochondrial   Reliability : 0.911
 

Sequence

CDS
ATGTCGAAGGGCGACAGCGAGCAGCAGAACGGCTCCGGCGAGGAGTCCAAGACCAATCTGATCATCAACTACCTGCCCCAGAGCATGACCCAGGAAGAGATCCGCAGCCTCTTCTCGAGCATCGGTGAAGTGGAATCTTGCAAGTTGATCCGGAACAAGGGCGCGGCCTTCCCCGACGCGCTCAATCACGCTCTGCACGGCGGCGGACAGAGCCTCGGCTACGCCTTTGTCAACTATCACCGGCCCGAGGATGCGGAGAAGGCTATTGCGACCCTCAACGGCCTGCGTCTCCAGAACAAAACAATCAAAGTGTCGTACGCGCGCCCCAGCAGCGAGGCCATCAAAGGTGCCAATTTATACGTATCCGGTCTTCCCAAGACCATGACTCAGAGCGAGCTCGAGCGCCTGTTCAGTCCGTACGGGCGCATCATCACGTCGCGTATACTATGCGAGAACTCGGGCGGGCGGCCCTTCACCGGCGGCGAACAAGGTTTGTCCAAGGGCGTCGGCTTCATCCGCTTCGACCAGCGCGTGGAAGCGGAGCGAGCCATACAAGAGTTGAACGGCACCATACCGAAAGGAGCCAGCGAGCCTATAACAGTGAAGTTCGCGAATAACCCGAGCAACAACGGGAAGGCGCTAGCTCCGTTGGCGGCGTACCTACCAGCCGCGCTGCGGTTCCCCGCGCCGCTGGGCCGGTTCAGTTCAGGCAAGTCGCTTCTCGCTATAAACAAAGGATTACAGCGCTACAGCCCTCTCGCCGGCGAGTTACTCGGAGGGGTCCTGCCCGGCGCCGTGGGCTCGGAGTGGTGCATCTTCGTCTACAACTTAGCTCCCGAGACGGAAGAGAACGTGCTGTGGCAGCTGTTCGGGCCCTTCGGCGCGGTGCAGAGCGTGAAAGTGATCCGCGACCTGCAGACGAACAAGTGCAAGGGATACGGGTTCATCACGATGACCAACTACGACGAGGCTGTGGTCGCCATCCAGTCCCTGAACGGGTACACGCTCGGTAACAGAGTGCTGCAAGTCAGCTTCAAGACCAACAAGATAAAGACGATCTAA
Protein
MSKGDSEQQNGSGEESKTNLIINYLPQSMTQEEIRSLFSSIGEVESCKLIRNKGAAFPDALNHALHGGGQSLGYAFVNYHRPEDAEKAIATLNGLRLQNKTIKVSYARPSSEAIKGANLYVSGLPKTMTQSELERLFSPYGRIITSRILCENSGGRPFTGGEQGLSKGVGFIRFDQRVEAERAIQELNGTIPKGASEPITVKFANNPSNNGKALAPLAAYLPAALRFPAPLGRFSSGKSLLAINKGLQRYSPLAGELLGGVLPGAVGSEWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGYGFITMTNYDEAVVAIQSLNGYTLGNRVLQVSFKTNKIKTI

Summary

EMBL
BABH01029363    KQ459670    KPJ20486.1    KQ459054    KPJ03899.1    NWSH01000388    + More
PCG76763.1    ODYU01003631    SOQ42628.1    JTDY01001148    KOB74740.1    AGBW02010820    OWR47685.1    KQ414617    KOC68197.1    KQ981153    KYN08964.1    GBBI01002170    JAC16542.1    KK107274    EZA53725.1    GL452770    EFN76795.1    GEBQ01018133    JAT21844.1    GEBQ01020683    JAT19294.1    GEBQ01006501    JAT33476.1    GECZ01028396    JAS41373.1    GECZ01007219    JAS62550.1    GECU01016121    JAS91585.1    GEDC01026181    GEDC01019872    JAS11117.1    JAS17426.1    GECZ01016221    JAS53548.1    GECU01003814    JAT03893.1    GECU01002152    JAT05555.1    GEDC01009775    JAS27523.1    GFXV01000238    MBW12043.1    GBHO01021277    JAG22327.1    KQ982548    KYQ55271.1    GBHO01033903    JAG09701.1    KQ976424    KYM88469.1    GAMC01017484    JAB89071.1    JR035790    JR035791    JR035792    JR035793    AEY56682.1    AEY56683.1    AEY56684.1    AEY56685.1    JRES01000955    KNC26820.1    KQ434977    KZC12821.1    KK852708    KDR18000.1    JR035794    JR035797    JR035798    JR035799    AEY56686.1    AEY56689.1    AEY56690.1    AEY56691.1    JR035795    JR035796    JR035800    JR035801    AEY56687.1    AEY56688.1    AEY56692.1    AEY56693.1    CH940653    KRF80738.1    AJWK01021069    AJWK01021070    JR035802    JR035803    JR035804    JR035805    AEY56694.1    AEY56695.1    AEY56696.1    AEY56697.1    CH933812    KRG07038.1    AB829504    AB829505    BAN59994.1    BAN59995.1    KZ288291    PBC29216.1    KRG07037.1    GDAI01002687    JAI14916.1    GAKP01021503    GAKP01021499    JAC37449.1    GAMC01017485    GAMC01017483    JAB89070.1    KK854488    PTY16275.1    KK112080    KFM56687.1    GBXI01012767    JAD01525.1    GBXI01003305    JAD10987.1    OUUW01000021    SPP89390.1    CH379065    EDY73206.1    CH902622    EDV34580.1    GBFC01000013    JAC59325.1    EDW05800.1    EDW62615.1    CM000162    EDX01511.1    CP012528    ALC48510.1    CH964239    EDW82152.1    CH916371    EDV91762.1    CH954180    EDV47256.1    BT125663    AE014298    ADN43900.1    AFH07361.1    AFH07363.2    AHN59643.1    CH477401    EAT41715.1    CH477515    EAT39711.1    GFDL01005902    JAV29143.1    GFDL01005898    JAV29147.1    JXUM01029111    KQ560843    KXJ80650.1    GAPW01001885    JAC11713.1    GGFK01011478    MBW44799.1    SPP89389.1    KRT07226.1    APCN01001689    KPU75204.1    IAAA01006536    LAA01731.1    ADMH02002138    ETN58341.1    IAAA01006537    LAA01735.1    GGFJ01006756    MBW55897.1    KRF99576.1    KQS30422.1    KQS30423.1    AF239667    BT120384    AAF43091.1    AAF48215.3    ABW09403.1    ADD16464.1    AFH07360.1    AFH07362.1    AGB95339.1    AGB95340.1    KRK06190.1    KRK06191.1    GFAC01005846    JAT93342.1    KRG07039.1    CH480836    EDW48958.1   
Pfam
PF00076   RRM_1
Interpro
IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR006548   ELAD_HU_SF       
IPR000504   RRM_dom       
IPR002343   Hud_Sxl_RNA       
IPR035979   RBD_domain_sf       
IPR034775   ELAV/Hu_RRM1       
IPR003954   RRM_dom_euk       
SUPFAM
SSF54928   SSF54928       
Gene 3D
PDB
1FNX     E-value=4.69136e-63,     Score=611

Ontologies

Topology

Length:
353
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.15051
Exp number, first 60 AAs:
0.00015
Total prob of N-in:
0.04825
outside
1  -  353
 
 

Population Genetic Test Statistics

Pi
258.7311
Theta
208.725356
Tajima's D
0.774788
CLR
0
CSRT
0.598670066496675
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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