Pre Gene Modal
BGIBMGA013824
Annotation
PREDICTED:_titin-like_isoform_X1_[Bombyx_mori]
Full name
Tetraspanin
Location in the cell
Nuclear Reliability : 3.421
Sequence
CDS
ATGTCGGACAACGAAGACTGGTTAGATGATGACTTCGGAGGTGAAAGCCTGACCGACTTCAATCCTGGAAATGAGGAGGAGGATTTGCTCTTGGCTGATGATTATGAAAGTGGTCCTCAAAATGTGCCAACTTCAATCAGAGCATACAATGAACGGGAAATACTTATTCAATCTGGCGACTATCCTACGCATCCCATAGAGGATAACCAGCCCTTGGTGTACCAGCCAGCTGTTGAACCAGAATGTGTTGTTCCAAATATAACAGTTGAGGTACCAAACCAGCCTACAGATCACGGACATTGCACATATGCTCCATATGAGCCTGCATATGACCCAGAAAGAACAGTTCCTCGAGCTATTCCTGCTGGACCAGTTGAGTCGCCACAGATTGTACCTTCTGAAATCAATCAACCAATTGCAAACGTAGAGATGGGTCGCCAAAGATTCATTGCAGAACGTAGCCCCGCACAGAGGATGCCTCAAGTCAGAGATATACCGGACACATTAGATAAAGTGGTGATACCCCGCAGCTCGTTCCGCGGCAGGCCGTGGATCCGATCCCAGTACACCAGGCACTCGCATCCTTACCGGACCAACTATGTGCATCGGGCTAAGTTTAATCAACGCGTGTCCTTCCCGCCGCCTCAGGTCCGTCCAAACACCTCACAAATTCGAGTAGAAAACCGGCCTCCAATCCAACCAGTGATTCGCCCACCAACCCAACCAGACTTTCGACCACCCGTTCAACCGGAGATAGGTCCTCCTATCCGGACGGAGGTCCGCCCACCCATCCAACCGGATATCCGTTCGACCGTTCCACCTGGAATCGGGCCACCCAATCAACCGGACGTTGGACCGCCGACGCAACTGGACGCGCGTCCTATTCAAACGGAGATCCGGCCGCTGGTCCGGCCCGACATGCCGCCGGATATCCGTATCGTCCGACCGGAGTTGAGGCCCATGCGCCCGGAAGAGTTACCTCCTCCCATGCTGGCACCAGAGATATCCCCGGAAAGAGCACCACATCCGGAGTTCAGAATGAATCCCCCGAGGTTCTTCAGGCCGAGCATGGAGGGACAGTTTGGTCCGGGCAGACCACACTTCGAGCCTCGCGGGCTCCAACATTACAGGTCGGCGCGCGCCCCCCCGCGGCAGGAGGTGCGCATGCTACCCGTGCTGCCGCCGCTCGCCGGCAAGAAGGTGCTCATCAACCCGCACTTCAAGGGAAACTTTCAGCCGCCGCTCGAAGGGTTCCCGGCGTACATACCGACTAGGATACAAAAATCGCCTCCCCGAAGTCCGCCGCCGTATCAAACCGGTCCGATAAAGGACATTGACGAGGCGGCGGAGAGGTTCATAGCCGAGCAAAGGGACGCACTGGCGCGGGCCGCCGGCAGGAAGGCCAGGCGCTCGCCGCAGAGGTACATCGAGAATACTACCATAGAGATCGAGAATGAGCTAGCGCAGAATCCGGGGTGGGGCGGCGGCAGGGGGAGGGCGGGGGAGGACGAGGAGTTGCTGAGGAGGCAGGAGGAATTCATCAATGCCAACAGAGCTGGCCTGAGGAGACGGATGAGGTCTCCGTCCCCTCCACGCCGGCCCCCCTCTCCGCGGCGCAGCCCCCCGCGGCGGCCCAGGGACAACGACGAGGAGTCGGAGTACAAGCGCCGGGTTCGCGAGCAGGAGACCCTGAGGGAGAGGGTGCTCCGCGCCAAGGAGCTGAGGAGGAGGAGGAACGCGGCACTCAGTCGTCAGCCGCCGCAGAGCAAGGAAGATGCAGATAGCAGAGACAAAGAGACGACCCCTCCAAAATCTGAAGAACCCCTCAAACCGGTCCCCCGGGTGGACCAGCCGACCAGCTCAGAGGAAATCAAACCGGACACCACCAAGAAGTCTCCAGAGAGGAAAACCGAGCTTGTAAAAAGAGCACCACCTCCGGCTGCGAAGGAACGGACCCCGCCCAGAGACGACGGCGCTGAGGTCAACTCTACCTGCGGTGAGTGA
Protein
MSDNEDWLDDDFGGESLTDFNPGNEEEDLLLADDYESGPQNVPTSIRAYNEREILIQSGDYPTHPIEDNQPLVYQPAVEPECVVPNITVEVPNQPTDHGHCTYAPYEPAYDPERTVPRAIPAGPVESPQIVPSEINQPIANVEMGRQRFIAERSPAQRMPQVRDIPDTLDKVVIPRSSFRGRPWIRSQYTRHSHPYRTNYVHRAKFNQRVSFPPPQVRPNTSQIRVENRPPIQPVIRPPTQPDFRPPVQPEIGPPIRTEVRPPIQPDIRSTVPPGIGPPNQPDVGPPTQLDARPIQTEIRPLVRPDMPPDIRIVRPELRPMRPEELPPPMLAPEISPERAPHPEFRMNPPRFFRPSMEGQFGPGRPHFEPRGLQHYRSARAPPRQEVRMLPVLPPLAGKKVLINPHFKGNFQPPLEGFPAYIPTRIQKSPPRSPPPYQTGPIKDIDEAAERFIAEQRDALARAAGRKARRSPQRYIENTTIEIENELAQNPGWGGGRGRAGEDEELLRRQEEFINANRAGLRRRMRSPSPPRRPPSPRRSPPRRPRDNDEESEYKRRVREQETLRERVLRAKELRRRRNAALSRQPPQSKEDADSRDKETTPPKSEEPLKPVPRVDQPTSSEEIKPDTTKKSPERKTELVKRAPPPAAKERTPPRDDGAEVNSTCGE
Summary
Similarity
Belongs to the tetraspanin (TM4SF) family.
Uniprot
EMBL
Proteomes
PRIDE
Pfam
PF00335 Tetraspanin
Interpro
Gene 3D
ProteinModelPortal
Ontologies
Topology
Subcellular location
Membrane
Length:
667
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00025
outside
1 - 667
Population Genetic Test Statistics
Pi
243.114148
Theta
185.627678
Tajima's D
1.497758
CLR
0.941337
CSRT
0.787860606969652
Interpretation
Uncertain
