SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16436
Pre Gene Modal
BGIBMGA013873
Annotation
PREDICTED:_endoplasmic_reticulum_metallopeptidase_1-like_isoform_X2_[Bombyx_mori]
Location
Bomo_Chr28(+):9933954-9958106      View in EpiBrowser
Location in the cell
PlasmaMembrane   Reliability : 4.393
 

Sequence

CDS
ATGGTAATTGAACAAGATGAAAGTGATAGTTTTAAACAGAGAAAAGGAATTGCTATGGATATCCTACCAAAATACACTGGTGTGCCAACAGATGATGAGATTAAACCAAAAGAAAAGCCTTGGCAAAGGATACCAAGTCCGTATATAGTCCTGTTGTTGGGTGCATATTTCTTACTAGGATACCTGACGCAGCTGGTGGAAGATGAGTTGCCAACGCCGCTCCGAGATTCAGATATTAACAGAGACACAACAGACAGAGTCAGCGAGGAGTCGTCGTGGAGATATTTATATGAGATAATGGGTGAGGAGCCCAGGGTCTGCGGCACGGAATACCATCTAAACAAGACCAGGGACATGAAGGCGATAGTGGACCGCATAGCTGTCACTGCCAACCAGAATGTTAGGACTGACTGGCAGATTGTCACAGGAGATTACTTCTTAAAGTCAGCGGCGCCATTTGTCAGCTACTACGACCGCGCCTCCAACATTGCAGCGCTGTTGGAAGGAGAGAGTGGTTTCCATGGCAACGGCACCATAGGCAGTTCGATCCTCGTCAACTGCCATTACGATTCTGTACCGTATGCCTTGGGGGCATCAGACAATGTGATATTTTGCGCCGCGATGGCCGAGACGTTAGCGAGGATGTCCAAGAGAACAAAAAAGCTCAAACACAACATCATATTCCTGTTCAACGGCGCCGAGGAGAATCCTTTACAGGGTAGCCACGGCTTTCTCCAGCATCCTTGGTCCAAGGGTGTGACGACGCTCGTAAATTTGGACTCCGCTGGAAGCAACGGGAAGGCCACCATATTTCAGGTGACTGACCCGAGGATCCTGAGCGCCTACAAGGCGGCTGTGACCCGGCCCAGCGCTCAGAGCCTGGGGGAGTTCCTCTTCTCCTCAGGGGTCATACCGTCCGATACGGATTTCAGGATATTTAGAGACTTCGGAGACGTTCACGGTGTTGACATAGCGTTCACGAAGTGGGGCAACCTGTACCACACCAGGTTCGACCGCCCGGAGTACATCCGGCCGGGCGTGCTGCAGTGGGCCGGGGACATGCTGCTGGGTCTCCTCACCCAGCTGGCTGACCGGGACGACATCGGACACAAGGTCCCCCCTGCCGGCGCCGTGTACTACGACTACCTCAACTGGTTCGTGGTGTGGCAGTCGCCGGCGCTGTCCCTACTGGTGGACGCCGCCGCGGTCCTGGCCGCCCTCGTCAGCACAGCGCACTACGTGTGGCTCGTGGGGCCTCGGTTGTCAACGGTACGCGAGTTGGCATTCGCCGTGGCGGGTCGGGTGGCGGCCCTGGTGGTCGGGGCGGGGGTGGCGGCCCTAGTCACCCTGCTGATGGTGGCCACCACGGTGCAACTGCGGTACCTATCTCGACCCTGGCTGGTGGTGGCGCTGTACTGGGTGCCGTATCTGGTCAGCGCCGTGACTGCGTCTCACCTGTATGACTCCTGGAGGAGCCGCAAGAGCGGATTGAACAGATCGATTCGCACCTTACAAGCCATGACCGCTACCCGGGTCGTGCTGACAGTGCTATTGTCAGTGTCGATGTGCGTGCCGAGCCTGGCGACGGCGCGCTACGCGCTGAGCGTGCCGCTGCTGATGACATCCGTGACGTCACTGGTGACGTCGTCCGTCGTCCGAACCGTCCGCCTGAAGGCCTACCAACACCTAGTGCTGGAGTGCGTGGTGTCGCTGCCGTGCGTGATGTTCACGATGAGCCTGGCGCTGCGGCTGAACGCTCTGCTGCTGCCCACGGTCGCGCGCTCGGCGTCTGCGAATCCCGACCTGGTCGTGGCCGCCGTCAATGTCGCCCTCGCCGCCGTTGTCAGCGCCGCCGTGTCCGGGGTGGAGCTACTGTTCTCGAGGCGGCGCCTGTGGCTGTCCCTGGCGGGGCTGGGGGCCGCGGCCGCCGCCCTCGCCCTGACGCCGCTGGAGCCCTACGCGGCCTCCGTCCCCAGCGTGCAGAGGCACTACTGGTTTCACACACAAATAACGACATACAATATAAACGGCGAACAAACAGATCAGACCACTGGAGTCTTTGTATCGAGACAGGACGCCTACACCACGGAGCGAGTGTTGCAAGCTCTAAAAACTAAAGGGATACACCTGAACACGCGGACTGATTTTGAGGAGGATTGTGAGAGGCACGTCTACTGCAACCTGCCGCTGTACAGGACATCATTCGCCAGGAACCTGGCTAGAGGCTTGTTCCTGTACACGGGGGGACCCACCGCCACTGACCCCCCCGCGGGCCTGGCGCTGTCTTCCCGCAGTTGTGTTGGAGACACTTGTGTCTACAGCTTTACGATGACCGGGACAGCACATAACCTGATAACGTTGGTGCCGTCAGAGGGGGTCACGCTGACGGCGTGGACGCTGTCATCCCCCGCGTCCCCCTCTACGCAGTGGGGGGGCAGGCCGCTCTACGTCATATTTCATTCAGTGGCCACCTATACGGAACCCTTTGAACCGTTTGTCTTCAACGTAACTCTAAACATGGGGGCGGCGCTGAGTGGGGCGGCGCTGCGGCTGTCCCTACACGCGCACCGCCTGCACCACCCCCACCAGTACTCGGCGGAGTACGCCGCACTCCTCCACTCCATGCCAGACTACTTCAACGTGGCCAGCATCCTCACCTTCAGAAACAACTACGTATTTTGA
Protein
MVIEQDESDSFKQRKGIAMDILPKYTGVPTDDEIKPKEKPWQRIPSPYIVLLLGAYFLLGYLTQLVEDELPTPLRDSDINRDTTDRVSEESSWRYLYEIMGEEPRVCGTEYHLNKTRDMKAIVDRIAVTANQNVRTDWQIVTGDYFLKSAAPFVSYYDRASNIAALLEGESGFHGNGTIGSSILVNCHYDSVPYALGASDNVIFCAAMAETLARMSKRTKKLKHNIIFLFNGAEENPLQGSHGFLQHPWSKGVTTLVNLDSAGSNGKATIFQVTDPRILSAYKAAVTRPSAQSLGEFLFSSGVIPSDTDFRIFRDFGDVHGVDIAFTKWGNLYHTRFDRPEYIRPGVLQWAGDMLLGLLTQLADRDDIGHKVPPAGAVYYDYLNWFVVWQSPALSLLVDAAAVLAALVSTAHYVWLVGPRLSTVRELAFAVAGRVAALVVGAGVAALVTLLMVATTVQLRYLSRPWLVVALYWVPYLVSAVTASHLYDSWRSRKSGLNRSIRTLQAMTATRVVLTVLLSVSMCVPSLATARYALSVPLLMTSVTSLVTSSVVRTVRLKAYQHLVLECVVSLPCVMFTMSLALRLNALLLPTVARSASANPDLVVAAVNVALAAVVSAAVSGVELLFSRRRLWLSLAGLGAAAAALALTPLEPYAASVPSVQRHYWFHTQITTYNINGEQTDQTTGVFVSRQDAYTTERVLQALKTKGIHLNTRTDFEEDCERHVYCNLPLYRTSFARNLARGLFLYTGGPTATDPPAGLALSSRSCVGDTCVYSFTMTGTAHNLITLVPSEGVTLTAWTLSSPASPSTQWGGRPLYVIFHSVATYTEPFEPFVFNVTLNMGAALSGAALRLSLHAHRLHHPHQYSAEYAALLHSMPDYFNVASILTFRNNYVF

Summary

Uniprot
A0A1E1WTP1   A0A1E1W5X9   A0A1E1WD19   A0A3S2LIP9   A0A0N1IPS9   A0A2A4JZA9   + More
Pubmed
26354079   
EMBL
GDQN01000848    GDQN01000087    JAT90206.1    JAT90967.1    GDQN01008678    JAT82376.1    + More
GDQN01006227    JAT84827.1    RSAL01000004    RVE54689.1    KQ460047    KPJ18003.1    NWSH01000388    PCG76750.1   
Proteomes
UP000283053    UP000053240    UP000218220   
Pfam
PF04389   Peptidase_M28
Interpro
IPR007484   Peptidase_M28        + More
IPR035914   Sperma_CUB_dom_sf       
IPR000859   CUB_dom       
SUPFAM
SSF49854   SSF49854       
Gene 3D
2.60.120.290    
ProteinModelPortal
A0A1E1WTP1   A0A1E1W5X9   A0A1E1WD19   A0A3S2LIP9   A0A0N1IPS9   A0A2A4JZA9   + More

Ontologies

KEGG
101746979    no KO assigned | (RefSeq) endoplasmic reticulum metallopeptidase 1-like
GO
GO:0016021  

Topology

Length:
893
Number of predicted TMHs:
9
Exp number of AAs in TMHs:
192.7829
Exp number, first 60 AAs:
13.16567
Total prob of N-in:
0.80067
POSSIBLE N-term signal
sequence
inside
1  -  43
TMhelix
44  -  66
outside
67  -  395
TMhelix
396  -  418
inside
419  -  430
TMhelix
431  -  453
outside
454  -  467
TMhelix
468  -  487
inside
488  -  506
TMhelix
507  -  529
outside
530  -  532
TMhelix
533  -  555
inside
556  -  561
TMhelix
562  -  584
outside
585  -  603
TMhelix
604  -  626
inside
627  -  630
TMhelix
631  -  650
outside
651  -  893
 
 

Population Genetic Test Statistics

Pi
200.348109
Theta
172.287225
Tajima's D
1.025743
CLR
0.01784
CSRT
0.664716764161792
Interpretation
Uncertain
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