SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16433
Pre Gene Modal
BGIBMGA013871
Annotation
PREDICTED:_S_phase_cyclin_A-associated_protein_in_the_endoplasmic_reticulum_[Bombyx_mori]
Location
Bomo_Chr28(+):9698328-9727362      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.117
 

Sequence

CDS
ATGGAAGAGGTACGGCAGCTGGTGCAAGAAGAAGGCAGGGAAGCCAGGAATCTAGTTGCATTTCACGTAGCGGTGGACACACCGATATCGCGGGTGCAAACCCGTAAGCCACCACGCTCAGCGCCACCCCGTCGTCCAGTTGCTCGACCCTCGCGGCTGCGGTCTGCCTCCGCTGGACGAGACAAACGATCTGAGCTCCGTGCTAGATACTGGGCGTTGCTTTTTGGAGACCTTCAGAGGGCTATTGGTGAAATCTACAACACGGTGGAAGCACACGAAAATCTAAACGAATGTCAAGAAGTAATACTTGTTTTAGAGAACTACACGCGAGATTTTAAAGCATTAGGTGAATGGTTCAGACTCAAATGGGAATATGATAACACGCCTCCGCCACAAAGACCTCAAAGTCTAGCATGGGAAATTAGAAAAACAGACTTCGTTCGTCCCGAGTCCCGACGCACTCACTCCGTCAAGAGCTCTCCTTCAGTCTCTGGAAAAAATAGCCCTTGCCTCTCTGGCCACAACACTCCGAGCGGAAAGAATAGCCCAAATCTCACCGGGAAAGCTAGTCCAGGCAGCGGGAAGATCAGTCCACGCGTTTTAAGTCATCCCACCACTAGTCCTAAGGCGAATGTTGAATTTTTCAGCAGTAAAATAGCAGCTAAAATTTCTCCGAAACCCGATGCTAAGATCGCCAAGGATACGATACGACTATCTGATATAAAAGAAAAGGAGAGTAAAGACTTTGTCAATCAAAATTCCGTCAGTGAAGATAGTAATGTATTTATTCAGAAAGAAGCGTCGGAGAATAATATTAAAACTGTTGAAGTAGGTAGAGCTAAAGAGATCGCGAATGTCAGTCCGAAGCACGTGATCCTCAAAACTACAGCAAAAAATGATAGCAAAGAGATGAAAACTAGCGAAACGATCTCGGAACAAGCTAAATATACCATAAGTAAACTCGACGCCATGGAAAACGAGTTTCTAGCAAAACAGTTAATAGTGAACGTCGCTAAAAACCAAAACATGTTGAACAAATCTAAGGAAAACGAAATTGAAAAAATATTCAGTAACACCAATACAATTCGCATCGACATGAAAGAGCCAGAGAATCATAACGGTGTAATTATTAAAGTCGAGGACATTAATTCTTTAATTGACGAAAAGCAAAGTTTATCTACGGAATCTCCAGCAAAATCCGAAGATAACTTCGGTGACGTTTCAAACGATAGTTTCAAGTCAAACGACGAGAAAATAGTTCATGAAAAGACCGACAAAAATATTGATGCTAAAGAGGATGAAAGCAGTAACTCACATCACATGAATAAACATTCGTTTCTTCCCGCCCTTGAATTGGCCAATCTTGACCCCATCGACAACATGACGCCTAATTTAAAAGAATCTAAAATAGAACTTGGTGATAGTGATGTTACAAATGGATATTTAGATTCATATAAAGACCTCGAAAAGGATAGTGATACCATGAAAAAAGAAGAAATGAAGAAACCTGAATCAAAAACCGAAGTTAAAGTCCTTAGACCAGCTTATTCTCAGGCAGCTGCTAAACCAAAACAAGCACCAGTAAAACCTGAAGTGAAAACTCCGACCAGAGTCTCCAACCTTCCCAAGAGTAAAGCTCCTTTAGAAATACGACCGGCTACAGCACCCAAAACTCCGAAAATGCCTAAAAGAAACCAAACAAGTAAATGCAGCTATCCCTTCAATCTGACGACCGGACGAACTAGCCTATTTGATCCAGCGACGAATAAAACAACTCTCAAGAAACCCGTTCGACACATGGGTGCCGGTGACTCCAAGCCACCTACAAAGCCGGACACCAAGAAACCTTCACTCAGACCGACATCCCTGAAAATTAACGAAAAAGGTGATAAACCGGAGAAGTTAAATCCGACGCTAGAAAAAATCAAAGACTGCGATGAGTACAGTAGCTCTGATACAATCGTAACACAAATCGATATATCGCGAATCGAATCTAGTGAAAGTCTGAAAACCTTGATTCCAGAAGACAATGTTGGGAATTCCGTTGAAGTTCTCAATGTTGACAACAACGATAATGAGGGCTGGTTGACTGTTAAGTCAAAACGATTGAGTCGCGAATCAAAAAAGCAATCAAGATCACACTGGGCCAATCGTTTCAACCAGCCGTCTGCTACAACCAGCTTACCGACGCTTATGATCGAATCGCCCAAACAAGAGTCTAATCCCATTGTAACTTCAGCGCACAGAGCTAAGTCTGAGCAGCCTCAATTTAACTTGGAGAACGCTCCGAGAGAACAGAAATCTTTTGCGCCCGAACCTGCCATAATAATAAACCAGAAATGTATTGAGGAAATGTCAGATTCGAACGTAAAGTCTGATGAAGAAACAAATTCCAAAGCTGAAACAGCTATCAGTCCGGTGCCGAAGTCATCAGAAGCGTATTCACCGGACCTTCCTAAATCGAAGGAAGATTTTTCTAATGCCGCTTCAAAATCGGCCGACGAAAGCTCACCGCCGCTACTGAAATATGTGGATGACTTGCAAAAGTCTGATGATCCGTCGATAATCCGTCAGAAATCCGATGTGACTGGCTTGAAGACTCGTTCAGCCAGAAACAAAGCCATGCGCAAAGGCAAGGCGAGGGTACGAGACGACATAGACCTGACCTCGAATAGACTCCACTCGTCTCTAGAAAGTCTCACGACCGCGCTGTCCCGCTCCCAAGAGAGCACCGAAGATATGTTCGATTTCGACAAATGGAAGGTGGAGTTCGTGTCCACGTTCAAATATTCGGACGACGACGATCAAATGACGGACCAGAATGACATACTGCAGACGGCCGATCCGTCGGAGATGTCGGAGATCGCGGAAATGACCTCGCAGATCGAGGAGAACGAACGGAAGATCAGCCTGGCTCTCGACTTTCAGTCCGAAGTCGACCAACGGAAGCTGAGCGAGGAAGAGGACCTGCTCAATCGCCAGATAATGGAGCTGCAGCAGGTTTCCGATGTGGATCTGGATACAGAGACCGATGACACGGAGACAGACGCAGAGCTGGTGTGCGAGGGTGCTGGACTGGAGGAGCAGTACGAGTCGGCCCTCGCCTCCATGTCCTGGGCGGAACGAGTCGACACCCTCGGAGCGCTAGAAGCTCTCGTCGCCAGAGACCCAGGTCGAGCCCAGCAGCTGCACGCGAAGCTATCGCAGAGCATCAAGCGCCGCGGCAGCTTCCAGGACGCCCTCAGGAGGCTCCAAGCTAAACAGGCCCGGGCTGAGAGACAGAGACTGGAATATCAGACGGAGAGAGCTAAGAAGATACACCATCTTCTTGCTAGAGTTGAAGAAGTGAAGGTAGCCAAAAATCAATTGATCGAAGAGAAAAGACTGAGAATGGAACAGAGGCTGCAGAAAGCGGCCGAGAACAGAGACCAGCATCTCAAGGACATAGTACGTAAAGCTCACGACGAAGAGGAAAAGCTCCGCGAGATAGCTTTCATCAAGCAGCTGGAGGCTGAGAACAGACGCCACGAGTTTCTGGACCAGTGCAGGTCGCAGAACACCAGGCTGAGGCAGATGAGGCGAGAGAGACTTACTAAACTCGCCGCCGCGGCAGCGCGGGAGGCGGCGGCGGGGGCGCGGCGGGCGGCGCTGGAGGCCGCGCGACGGCTCAGGGTCGCGTCGCTGCTGGAGCGGCGCCGCCAGAGGGACGCCAGGGTGCTGTCCCACCGCGAGCTGCTGCACCGCGAGCGCTGCCACGCCAACCGGGAGAAGGCGGAAGGAGTGAAGTCTCGACTGTCCGCGCTGGCTGCGGCCGCCGAGCTCGAGGCTGACGCTCTGAGGTCTCGGATCCGGGACAAGCAGGACGCCACTCAGCTGCGGCTGGACCGGCACCTGCAGGCCATAAGGGACCGGGCCACCACCAGGGTCGCGACAACATCGGAGAGTCAAGATGAGAAAACGAAAGAGGAGAAGGACATTAAGGAGGCCGCCGAGCGAGTGGAGCGGGAGAGGAGGGACCGGGAGAAACAGAAGGCCATCAAGAAGAGAGCCAGGAAGGTCAAGCAGAAGCTGCTGTCCACGAGCGACGACATCGACCTCTCCGACCAGAACGACCACCCGTCCGGCAAGATGACCAAGGTCATCAACCAGATATCGGCCATCATGGCGCCGTTGTTGGAGCCGGGCCTGGTCGCCAGGAAGCACCACAACGGCTTCGAGGAGGAGGTGGTCAGAACGAAGAAGAACAAGAAGAGTAACAGGCTGAGCAAGAGCGGTTCCGTGTGTAGTTCCGGCAGCGACCTCAGCCGGGCGGGGGCGGAGCGTGGGGCGCCGCCCTGTCTCGACGTGCCGCTGCTCGAGAAGCAGCTGAACGAGCTGCACCGCATGCTCGAAAAGGTCGACAAGGAGCTACAAGAGAAGGCAGCGTACCGCAAGATCCAAGGTCTGAAGGTGGTCGGTCAGATGCTCGCCGTCGCCGCCGAGAGGGAGGACGTGGCTCCCCAGTTCACCACCAAGTGTCTGAGCGCGGCCGTGCAGTGCGTGGGCCGCGCCATGGGCGTGTGCAGCCGCGGCTCCGTCGCCTTCGTGTGCGGCGCCACGCCCGTACACCTCGCCACCATCCTCACTGGACTGCTCGAGAAAGATCTAGAAGCAGATCATAAGGAGTTGGAGTTAGCGAAGCAGGTGTCGGATTGTCTTTCAATCGGACTGGACTCCGTGCTGTGCGCGACGAGGCTATTTGTGGAGCGACGAGGATTCGATGATGCACGGCTGCTGGCGACCTTGAGGAGCAGAGCCCACACCATCATCAGGTAA
Protein
MEEVRQLVQEEGREARNLVAFHVAVDTPISRVQTRKPPRSAPPRRPVARPSRLRSASAGRDKRSELRARYWALLFGDLQRAIGEIYNTVEAHENLNECQEVILVLENYTRDFKALGEWFRLKWEYDNTPPPQRPQSLAWEIRKTDFVRPESRRTHSVKSSPSVSGKNSPCLSGHNTPSGKNSPNLTGKASPGSGKISPRVLSHPTTSPKANVEFFSSKIAAKISPKPDAKIAKDTIRLSDIKEKESKDFVNQNSVSEDSNVFIQKEASENNIKTVEVGRAKEIANVSPKHVILKTTAKNDSKEMKTSETISEQAKYTISKLDAMENEFLAKQLIVNVAKNQNMLNKSKENEIEKIFSNTNTIRIDMKEPENHNGVIIKVEDINSLIDEKQSLSTESPAKSEDNFGDVSNDSFKSNDEKIVHEKTDKNIDAKEDESSNSHHMNKHSFLPALELANLDPIDNMTPNLKESKIELGDSDVTNGYLDSYKDLEKDSDTMKKEEMKKPESKTEVKVLRPAYSQAAAKPKQAPVKPEVKTPTRVSNLPKSKAPLEIRPATAPKTPKMPKRNQTSKCSYPFNLTTGRTSLFDPATNKTTLKKPVRHMGAGDSKPPTKPDTKKPSLRPTSLKINEKGDKPEKLNPTLEKIKDCDEYSSSDTIVTQIDISRIESSESLKTLIPEDNVGNSVEVLNVDNNDNEGWLTVKSKRLSRESKKQSRSHWANRFNQPSATTSLPTLMIESPKQESNPIVTSAHRAKSEQPQFNLENAPREQKSFAPEPAIIINQKCIEEMSDSNVKSDEETNSKAETAISPVPKSSEAYSPDLPKSKEDFSNAASKSADESSPPLLKYVDDLQKSDDPSIIRQKSDVTGLKTRSARNKAMRKGKARVRDDIDLTSNRLHSSLESLTTALSRSQESTEDMFDFDKWKVEFVSTFKYSDDDDQMTDQNDILQTADPSEMSEIAEMTSQIEENERKISLALDFQSEVDQRKLSEEEDLLNRQIMELQQVSDVDLDTETDDTETDAELVCEGAGLEEQYESALASMSWAERVDTLGALEALVARDPGRAQQLHAKLSQSIKRRGSFQDALRRLQAKQARAERQRLEYQTERAKKIHHLLARVEEVKVAKNQLIEEKRLRMEQRLQKAAENRDQHLKDIVRKAHDEEEKLREIAFIKQLEAENRRHEFLDQCRSQNTRLRQMRRERLTKLAAAAAREAAAGARRAALEAARRLRVASLLERRRQRDARVLSHRELLHRERCHANREKAEGVKSRLSALAAAAELEADALRSRIRDKQDATQLRLDRHLQAIRDRATTRVATTSESQDEKTKEEKDIKEAAERVERERRDREKQKAIKKRARKVKQKLLSTSDDIDLSDQNDHPSGKMTKVINQISAIMAPLLEPGLVARKHHNGFEEEVVRTKKNKKSNRLSKSGSVCSSGSDLSRAGAERGAPPCLDVPLLEKQLNELHRMLEKVDKELQEKAAYRKIQGLKVVGQMLAVAAEREDVAPQFTTKCLSAAVQCVGRAMGVCSRGSVAFVCGATPVHLATILTGLLEKDLEADHKELELAKQVSDCLSIGLDSVLCATRLFVERRGFDDARLLATLRSRAHTIIR

Summary

Uniprot
H9JWF7   A0A3S2MAD6   A0A2H1WZZ6  
Pubmed
19121390   
EMBL
BABH01029321    BABH01029322    RSAL01000004    RVE54694.1    ODYU01012349    SOQ58621.1    + More
Proteomes
UP000005204    UP000283053   
PRIDE
H9JWF7   
Pfam
PF16501   SCAPER_N
Interpro
IPR032446   SCAPER_N       
ProteinModelPortal
H9JWF7   A0A3S2MAD6   A0A2H1WZZ6  

Ontologies

KEGG
101746699    no KO assigned | (RefSeq) S phase cyclin A-associated protein in the endoplasmic reticulum
GO

Topology

Length:
1604
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.19869
Exp number, first 60 AAs:
0.00035
Total prob of N-in:
0.00003
outside
1  -  1604
 
 

Population Genetic Test Statistics

Pi
245.395964
Theta
196.11417
Tajima's D
1.348765
CLR
0.231978
CSRT
0.749162541872906
Interpretation
Uncertain
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