Gene

KWMTBOMO16407

Annotation

PREDICTED:_photoreceptor-specific_nuclear_receptor_[Bombyx_mori]

Location

Bomo_Chr28(+):8647239-8678994      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.029 Nuclear   Reliability : 1.676

CDS

ATGAAGGAACAACTCCGAAGGCGCGAAAAAGAGAACCAGTCGCCGTTGCGTTGGTCGCCGCCATCCTCTGCGGCTCTGGTGGCTGCAGCGCTCGCGCCCCCGACCCTACGACCTTGGCTACCAGAGCCTCCCACGAAGAAGTCCAACCATTTGGGTCTGATATGCGTTGTCTGCGGCGACACGAGCTCCGGGAAGCACTACGGGATCCTCGCCTGCAACGGCTGCAGTGGATTCTTCAAAAGATCCGTCAGGAGGAAACTTATTTATCGGTGTCAAGCTGGTACCGGCCGCTGCGTCGTGGATAAGGCGCACCGGAACCAGTGCCAAGCGTGCAGACTGAAGAAGTGCCTCGCCATGGGAATGAATAAAGATGCCGTGCAAAATGAAAGGCAGCCCAGGAATACCGCGACGATTCGGCCTGAAGCTCTGCGGGAGATGGACCAGGAAAGAGCCCTGCGAGAAGCGGCGGTGGCTGTGGGCGTTTTCGGGTGA

Protein

MKEQLRRREKENQSPLRWSPPSSAALVAAALAPPTLRPWLPEPPTKKSNHLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCLAMGMNKDAVQNERQPRNTATIRPEALREMDQERALREAAVAVGVFG

Similarity

Belongs to the nuclear hormone receptor family.

Uniprot

A0A3S2TSI5   A0A2A4K618   A0A2W1BFW1   A0A2A3E937   B4J9R4   A0A0C9R673   + More
A0A088AE55   E2BVY7   A0A067RPG0   U5EQN9   B4GIP1   A0A195BA55   A0A0M5IXI9   A0A3B0J7K9   A0A195D0K0   A0A182PVT0   A1ZA01   A0A182HRJ4   B4MFS5   A0A0J9U2P0   B3MEW4   A0A1B0AM10   A0A182UNL8   A0A1I8Q2E4   B3NQE3   A0A182QJF6   A0A1I8Q2H3   A0A3L8DXG2   B4MJT5   A0A1W4WBR1   A0A0N8ES20   B4KS97   N6W635   B4P899   A0A182IPS0   A0A1B0GC38   Q173C6   A0A084W8K1   A0A1A9V953   A0A1I8Q2H1   A0A1I8N0D0   A0A2M4CPP4   A0A2M4CQW8   A0A1L8DGU7   A0A1L8DGG9   J9K467   A0A1A9YP99   A0A1S4FG15   A0A2R5L805   W5JEN9   A0A0V1HYR9   A0A0V1I675   A0A0V1MVH3   A0A0V1K7V9   A0A0V1I065   A0A0V1MW61   A0A0V1G5D4  

Pubmed

28756777    17994087    20798317    24845553    10731132    12537568    + More
12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    30249741    26999592    15632085    17550304    17510324    24438588    25315136    20920257    23761445   

EMBL

RSAL01000008    RVE53922.1    NWSH01000108    PCG79466.1    KZ150265    PZC71706.1    + More
KZ288321    PBC28237.1    CH916367    EDW01478.1    GBYB01008287    JAG78054.1    GL451079    EFN80135.1    KK852504    KDR22520.1    GANO01004174    JAB55697.1    CH479183    EDW36361.1    KQ976542    KYM81110.1    CP012524    ALC41394.1    OUUW01000001    SPP75902.1    KQ977004    KYN06443.1    AE013599    BT122090    AAM68536.2    ADE06696.1    APCN01001713    CH940667    EDW57246.1    CM002911    KMY93975.1    CH902619    EDV36585.2    JXJN01000298    CH954179    EDV55919.2    AXCN02000660    QOIP01000003    RLU24982.1    CH963846    EDW72374.2    GDUN01000690    JAN95229.1    CH933808    EDW08379.2    CM000071    ENO01713.2    CM000158    EDW91139.2    CCAG010018986    CH477427    EAT41134.1    ATLV01021484    ATLV01021485    KE525319    KFB46545.1    GGFL01003109    MBW67287.1    GGFL01003110    MBW67288.1    GFDF01008520    JAV05564.1    GFDF01008538    JAV05546.1    ABLF02039854    ABLF02039861    GGLE01001507    MBY05633.1    ADMH02001704    ETN61355.1    JYDS01000307    KRZ15864.1    JYDP01000003    KRZ18361.1    JYDO01000034    KRZ75793.1    JYDR01000020    JYDV01000010    KRY75150.1    KRZ43277.1    KRZ15863.1    KRZ75792.1    JYDT01000002    KRY93439.1   

Proteomes

UP000283053    UP000218220    UP000242457    UP000001070    UP000005203    UP000008237    + More
UP000027135    UP000008744    UP000078540    UP000092553    UP000268350    UP000078542    UP000075885    UP000000803    UP000075840    UP000008792    UP000007801    UP000092460    UP000075903    UP000095300    UP000008711    UP000075886    UP000279307    UP000007798    UP000192221    UP000009192    UP000001819    UP000002282    UP000075880    UP000092444    UP000008820    UP000030765    UP000078200    UP000095301    UP000007819    UP000092443    UP000000673    UP000054805    UP000055024    UP000054843    UP000054632    UP000054826    UP000054995   

PRIDE

A1ZA01   

Pfam

PF00105   zf-C4        + More
PF00104   Hormone_recep

Interpro

IPR013088   Znf_NHR/GATA        + More
IPR001628   Znf_hrmn_rcpt       
IPR035500   NHR-like_dom_sf       
IPR001723   Nuclear_hrmn_rcpt       
IPR000536   Nucl_hrmn_rcpt_lig-bd       

SUPFAM

SSF48508   SSF48508       

Gene 3D

3.30.50.10     1.10.565.10    

ProteinModelPortal

A0A3S2TSI5   A0A2A4K618   A0A2W1BFW1   A0A2A3E937   B4J9R4   A0A0C9R673   + More
A0A088AE55   E2BVY7   A0A067RPG0   U5EQN9   B4GIP1   A0A195BA55   A0A0M5IXI9   A0A3B0J7K9   A0A195D0K0   A0A182PVT0   A1ZA01   A0A182HRJ4   B4MFS5   A0A0J9U2P0   B3MEW4   A0A1B0AM10   A0A182UNL8   A0A1I8Q2E4   B3NQE3   A0A182QJF6   A0A1I8Q2H3   A0A3L8DXG2   B4MJT5   A0A1W4WBR1   A0A0N8ES20   B4KS97   N6W635   B4P899   A0A182IPS0   A0A1B0GC38   Q173C6   A0A084W8K1   A0A1A9V953   A0A1I8Q2H1   A0A1I8N0D0   A0A2M4CPP4   A0A2M4CQW8   A0A1L8DGU7   A0A1L8DGG9   J9K467   A0A1A9YP99   A0A1S4FG15   A0A2R5L805   W5JEN9   A0A0V1HYR9   A0A0V1I675   A0A0V1MVH3   A0A0V1K7V9   A0A0V1I065   A0A0V1MW61   A0A0V1G5D4  

PDB

3E00     E-value=3.17899e-26,     Score=289

KEGG

101745996    K08546 nuclear receptor subfamily 2 group E member 3 | (RefSeq) photoreceptor-specific nuclear recep

GO

GO:0005634   GO:0046872   GO:0003677   GO:0003707   GO:0043565   GO:0008270   GO:0003700   GO:0020037   GO:0042752   GO:0031103   GO:0048526   GO:0016319   GO:0048842   GO:0007411   GO:0003682   GO:0016322   GO:0010468   GO:0045475   GO:0006357   GO:0006355   GO:0005839   GO:0051603   GO:0046835   GO:0006281   GO:0006259  

Subcellular location

Nucleus  

Length:

163

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0404

Exp number, first 60 AAs:

0.03482

Total prob of N-in:

0.54256

inside

1  -  163

 

 

Pi

246.445632

Theta

161.665493

Tajima's D

1.56316

CLR

0.231058

CSRT

0.800209989500525

Interpretation

Uncertain