Gene

KWMTBOMO16402

Pre Gene Modal

BGIBMGA013851

Annotation

PREDICTED:_putative_ATP-dependent_RNA_helicase_DHX30_[Bombyx_mori]

Location

Bomo_Chr28(+):8541365-8544906      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.49

CDS

ATGAAACCACGCTCCCGCGAACGCGCCCACGTCAGCAGCGAGAGCGTGAACCACAATGTGATCAAGCGGGGCGATAAATGCAAGCTGATCGCGTATTTCGGGGGCCACCGCTCGGCCGAGAGGAGAGCCCTCGTGCTCCACAAGACCAGCCTCGTGCCCCCCCAGACCGCCCTGCTGTTCAGCCCCTCTGACGTGCGGAAGGAGGCGTCGGACAGTGAAACAACGATATTGTCTATACGAAAACATAACTTAAGAATACACATGCCAACCTGTCAAGCAGATTATTTATTAAAAGCCAGAGAAATGCTGTGGAACACATTCAAGTACCAAATAGAGAGAAATATGAATACTCTAGATTACGGTGACAACACTAAAGTATCAAGATTCAGAGTCAGACTGGTCAAGAGCATCGGAAGGATATTAGTGGAAGGATCACGAGAGTGCTTGGAAGGAAAGAAGGAAAAAGTATTTGTTGATGACGAATAA

Protein

MKPRSRERAHVSSESVNHNVIKRGDKCKLIAYFGGHRSAERRALVLHKTSLVPPQTALLFSPSDVRKEASDSETTILSIRKHNLRIHMPTCQADYLLKAREMLWNTFKYQIERNMNTLDYGDNTKVSRFRVRLVKSIGRILVEGSRECLEGKKEKVFVDDE

Uniprot

H9JWD7   A0A2H1W358   A0A212F0D8   A0A0N1I2R1   A0A1E1WS98   A0A2W1BD14   + More
A0A3S2P6Z0   A0A0L7LHN4   A0A026WRL3   E2AQI2   A0A0J7N443   A0A1B6F8D4   A0A1B6E7S0   A0A1B6K2X3   A0A1B6KUX6   A0A1B6JUF2   E2BYV6   A0A154P2B3   A0A151IBR3   K7J1Y4   A0A232F3R9   A0A2J7QIM2   A0A2A3EQW4   A0A151WL97   N6UA16   A0A0M8ZWU6  

Pubmed

19121390    22118469    26354079    28756777    26227816    24508170    + More
30249741    20798317    20075255    28648823    23537049   

EMBL

BABH01029202    BABH01029203    BABH01029204    ODYU01006002    SOQ47463.1    AGBW02011097    + More
OWR47218.1    KQ459547    KPJ00035.1    GDQN01001373    JAT89681.1    KZ150265    PZC71704.1    RSAL01000008    RVE53921.1    JTDY01001104    KOB74874.1    KK107128    QOIP01000006    EZA58331.1    RLU21652.1    GL441773    EFN64291.1    LBMM01010444    KMQ87455.1    GECZ01023267    JAS46502.1    GEDC01003306    JAS33992.1    GECU01010168    GECU01001905    JAS97538.1    JAT05802.1    GEBQ01024923    JAT15054.1    GECU01030878    GECU01004900    GECU01004084    JAS76828.1    JAT02807.1    JAT03623.1    GL451531    EFN79128.1    KQ434804    KZC06075.1    KQ978111    KYM96938.1    NNAY01001011    OXU25496.1    NEVH01013589    PNF28424.1    KZ288193    PBC34183.1    KQ982971    KYQ48616.1    APGK01036917    KB740945    KB632197    ENN77481.1    ERL89998.1    KQ435845    KOX71199.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000283053    UP000037510    UP000053097    + More
UP000279307    UP000000311    UP000036403    UP000008237    UP000076502    UP000078542    UP000002358    UP000215335    UP000235965    UP000242457    UP000075809    UP000019118    UP000030742    UP000053105   

PRIDE

H9JWD7   

Pfam

PF00271   Helicase_C        + More
PF04408   HA2
PF00270   DEAD

Interpro

IPR027417   P-loop_NTPase        + More
IPR007502   Helicase-assoc_dom       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR003034   SAP_dom       
IPR001025   BAH_dom       
IPR031083   YTHDC2-related       

SUPFAM

SSF52540   SSF52540       

CDD

cd00079  HELICc

ProteinModelPortal

H9JWD7   A0A2H1W358   A0A212F0D8   A0A0N1I2R1   A0A1E1WS98   A0A2W1BD14   + More
A0A3S2P6Z0   A0A0L7LHN4   A0A026WRL3   E2AQI2   A0A0J7N443   A0A1B6F8D4   A0A1B6E7S0   A0A1B6K2X3   A0A1B6KUX6   A0A1B6JUF2   E2BYV6   A0A154P2B3   A0A151IBR3   K7J1Y4   A0A232F3R9   A0A2J7QIM2   A0A2A3EQW4   A0A151WL97   N6UA16   A0A0M8ZWU6  

KEGG

101745709    K13185 ATP-dependent RNA helicase DHX30 [EC:3.6.4.13] | (RefSeq) putative ATP-dependent RNA helicase

GO

GO:0005524   GO:0004386   GO:0003676   GO:0016787   GO:0003682  

PANTHER

PTHR18934:SF100  

Length:

161

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00149

Exp number, first 60 AAs:

0.00138

Total prob of N-in:

0.42580

outside

1  -  161

 

 

Pi

276.624671

Theta

171.557543

Tajima's D

2.014607

CLR

0.322682

CSRT

0.881205939703015

Interpretation

Uncertain