Gene

KWMTBOMO16401

Pre Gene Modal

BGIBMGA013851

Annotation

PREDICTED:_putative_ATP-dependent_RNA_helicase_DHX30_[Bombyx_mori]

Location

Bomo_Chr28(+):8521975-8540000      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.181 Mitochondrial   Reliability : 1.539

CDS

ATGTACATACATTTTATTAACTTTTTTATTTCAGATGATTACTCGGATAATGTTTTCGAAAAGGAAAACAGTACCAACGATGTTTTTGAACAAAAAAACAACGTCCATCCCGTGTACGGAAGGATCATAACGGAGCCGTCGGAAAACACATTAACGAAACGCGAGAGAACTCTGACAAGGAAATTTGAACTTTACGACGCCGAGAAAACTCCTTTGCCCATCGATGGATACGCTAAGCAAATATCTGAGGCGGTCGAAGCCAGCCGGGTGACTGTGGTTGTGGGGGAAGCTGGCTGTGGGAAGTCCACGCGAGTGCCGATCGCGTTGTTGCAAAACTCCTTGTTGTCGACCGCCATTGTGTCGGAGCCGAGACGCGTGGCCGCCATCGGACTGGCGCAGAGAGTCGCCAGCGAACTAGGGGAGGAGGTTGGAGAAACAGTCGGTTATCAAGTGCGCTTGCACTCGAAGCCGCCGCGGCCACCCGCCGGCTCCGTGCTCTACTGCACCAGCGGGGTCCTGCTGAGGAGGCTGCAGGCCAACCCAGGTCTCGTAGGCTGCACTCACGTGCTCATAGATGAGGCTCACGAGAGGGACGTGAACACCGATGTGACCTTATTGCTTTTGAAAAGAGCTTTGAAGATCAATTCGGAGCTTAAAGTCGTTATAATGAGCGCCACGCTTGATGTCGACGTGTTCACTAGATATTTCGGACAATGTCCGGTGATAGCAGTTCCGGGGAGAACTTACCCGGTCGAGGTCACGTATCTCGATGACATACAAAAGAAGTTCAATTTGAATTTGCCCAAAACGATGGAGAGTATCTCGAGGGCGGGCGGTAGACCGACGGTCCACTGCCAAGAGATAGCCGAAGTGATAAAAGCGATCGACAGAACGCAAGAGGAAGGTGCGATTTTAGTGTTCCTCCCGGGCTGGGCCGAGATAAAATATACGATGCAGATATTAGAAGAGCACTATCGAGGCTCGGACTTGCATATGCTCGTGCCTGTTCATTCCAGACTGTCGGCGTTGGAGCAGGCGCGCATATTCTCGGCGGCGGCGGCGGGCGTGCGGCGCGTGCTGCTGGCGACCAACGTGGCGGAGACGTCGCTGACGGTGCCGGACGTCACGCACGTGCTGGACACCGGCGCGCACCGGGAGAACACCACCGACCAGAGCGCGGGTACATTATGTCTGGAGACGGCGTGGGTGTCGCAGGCCGCCGCCAAGCAGAGGTGCGGACGAGCCGGGAGAGTGCGAGCGGGTCACTGCTACAAGCTGTACACGAGGCAGAAGGAGCAGGAGTTCCGGCCGCACTCCACCCCCGAGATACTGAGGGTGCCGCTGGTGCAGACGGTGCTGGACTGCAAGTCGTACGCTCCGGACGACAGGATCGAGGACTTCCTGTCGCAGCTGCCGGAGCCCCCCGGCTCGGACGCTATCGACTTCGCCGTCAACGACCTCGTGGAGATTGGTGCTCTAACTAGCCGGCAACAGCTGACTCGTCTCGGCGGGCTGTTGTGCGGCCTGGCGCTGTCGCCGCGGGTCGCCGTCTGCCTGCTACACTCGGTGGCCATTGGCAATGTCATTGCCGCCGCCACGATCGCCACGCACGTCAGCGACAACCTGCAGCTGTTCCACGACGTTGCTCAACGCAAGGCAGAAATACTCGAGATGAAGCGCAAGTTCAGTCCGACGTGTGACTACAGCGCCCTGTACTGGATCCAGCGCGAGTTCGAACAGAAGCTGTCCGAGCTCGGCGGGGGGGAGGCGGGGCGCTGGTGCACGCAGCACGGACTCAGTAAGGAGAGATTGAAAAACGTTAAAGTGTTTGTTAATAAGCGCGCGGCGTGA

Protein

MYIHFINFFISDDYSDNVFEKENSTNDVFEQKNNVHPVYGRIITEPSENTLTKRERTLTRKFELYDAEKTPLPIDGYAKQISEAVEASRVTVVVGEAGCGKSTRVPIALLQNSLLSTAIVSEPRRVAAIGLAQRVASELGEEVGETVGYQVRLHSKPPRPPAGSVLYCTSGVLLRRLQANPGLVGCTHVLIDEAHERDVNTDVTLLLLKRALKINSELKVVIMSATLDVDVFTRYFGQCPVIAVPGRTYPVEVTYLDDIQKKFNLNLPKTMESISRAGGRPTVHCQEIAEVIKAIDRTQEEGAILVFLPGWAEIKYTMQILEEHYRGSDLHMLVPVHSRLSALEQARIFSAAAAGVRRVLLATNVAETSLTVPDVTHVLDTGAHRENTTDQSAGTLCLETAWVSQAAAKQRCGRAGRVRAGHCYKLYTRQKEQEFRPHSTPEILRVPLVQTVLDCKSYAPDDRIEDFLSQLPEPPGSDAIDFAVNDLVEIGALTSRQQLTRLGGLLCGLALSPRVAVCLLHSVAIGNVIAAATIATHVSDNLQLFHDVAQRKAEILEMKRKFSPTCDYSALYWIQREFEQKLSELGGGEAGRWCTQHGLSKERLKNVKVFVNKRAA

Uniprot

H9JWD7   A0A2H1W358   A0A2W1BD14   A0A3S2P6Z0   A0A2H1W369   A0A0N1I2R1   + More
A0A2J7QIM6   A0A2J7QIK8   A0A2J7QIM2   A0A1B6D5F5   A0A1B6E7S0   A0A067R1K9   A0A0J7N443   A0A232F3R9   E2AQI2   K7J1Y4   D6WR01   A0A1B6JUF2   A0A1B6KUX6   A0A0C9RAH5   A0A0P5HD25   A0A0N8CFU7   A0A0P5Q7S4   A0A0P5ZV55   E9FW51   A0A162SS74   A0A0P6HSL9   A0A0P6EBC2   A0A0P5W8I3   A0A3S3PG41   A0A0P5Z7N0   A0A2P8Z378   A0A1W4XGG8   A0A195BRT6   A0A1Y1M4R4   A0A1Y1M7C7   Q4SLJ6   A0A3Q3MLB2   A0A3Q3SC80   A0A1A8MCD6   A0A195EX00   A0A1B6FBX0   A0A1A8LX32   A0A1A8NWU2   A0A1Y1M649   A0A3Q2YBA6   A0A158NNZ5   A0A1A8A2H8   A0A1A8PPH4   A0A1A8I8A4   A0A1A8EQ18   A0A3Q2CIP5   A0A3Q3FMK5   H3CSX9   A0A1A8JQ21   A0A3B4G9U5   A0A0P4YBL8   G3Q113   F4WPH9   A0A1A7ZGX7   A0A0P5Y1Q1   A0A3P9DHI3   A0A0N8DVW8   A0A3B3BFP7   A0A1A8PDE3   A0A3Q3BRL1   A0A3P8S1Q8   A0A3Q1BQF0   A0A3Q1CR53   A0A1A8HIY7   A0A3P8QLQ4   A0A3Q3CKF4   A0A3B4X271   A0A2U9BJ26   A0A3P8VLC7   A0A3Q4MPV5   A0A1A7XCB5   A0A1A7YGG4   A0A1A8J218   A0A1A8UL30   A0A1W0WL65   A0A151WL97   H0YPC0   A0A093FLT7   A0A3P9HNX1   A0A3Q2TSG4   A0A3L8RUM3   I3JTA5   A0A091G9X6   A0A087QJJ0   A0A3Q2TWE1   U3JH43   A0A091FID0   A0A218UGY0   A0A091RQJ4   R0JIJ9   A0A3Q1GXA1   A0A3M0J4J1   H2MS81  

Pubmed

19121390    28756777    26354079    24845553    28648823    20798317    + More
20075255    18362917    19820115    21292972    29403074    28004739    15496914    21347285    21719571    25186727    29451363    24487278    20360741    17554307    15592404    30282656   

EMBL

BABH01029202    BABH01029203    BABH01029204    ODYU01006002    SOQ47463.1    KZ150265    + More
PZC71704.1    RSAL01000008    RVE53921.1    ODYU01006004    SOQ47473.1    KQ459547    KPJ00035.1    NEVH01013589    PNF28423.1    PNF28425.1    PNF28424.1    GEDC01016422    JAS20876.1    GEDC01003306    JAS33992.1    KK852779    KDR16683.1    LBMM01010444    KMQ87455.1    NNAY01001011    OXU25496.1    GL441773    EFN64291.1    KQ971351    EFA06533.2    GECU01030878    GECU01004900    GECU01004084    JAS76828.1    JAT02807.1    JAT03623.1    GEBQ01024923    JAT15054.1    GBYB01005265    JAG75032.1    GDIQ01229480    JAK22245.1    GDIP01135871    JAL67843.1    GDIQ01121021    JAL30705.1    GDIP01250757    GDIP01039046    JAM64669.1    GL732525    EFX88984.1    LRGB01000024    KZS21583.1    GDIQ01022714    JAN72023.1    GDIQ01065994    JAN28743.1    GDIP01089726    JAM13989.1    NCKU01002705    RWS08967.1    GDIP01047730    JAM55985.1    PYGN01000217    PSN50954.1    KQ976417    KYM89742.1    GEZM01041341    JAV80501.1    GEZM01041342    JAV80500.1    CAAE01014556    CAF98486.1    HAEF01013303    SBR54462.1    KQ981953    KYN32409.1    GECZ01022039    JAS47730.1    HAEF01009467    SBR48534.1    HAEG01005185    SBR73498.1    GEZM01041343    JAV80498.1    ADTU01021887    ADTU01021888    HADY01009895    SBP48380.1    HAEI01003035    SBR82902.1    HAED01006842    SBQ92970.1    HAEB01002044    SBQ48571.1    HAEE01002188    SBR22208.1    GDIP01233458    JAI89943.1    GL888245    EGI63892.1    HADY01003597    SBP42082.1    GDIP01065232    JAM38483.1    GDIQ01086724    JAN08013.1    HAEH01006465    SBR79296.1    HAEB01008080    HAEC01015979    SBQ84200.1    CP026249    AWP03993.1    HADW01014064    SBP15464.1    HADX01007415    SBP29647.1    HAED01017209    SBR03654.1    HAEJ01007844    SBS48301.1    MTYJ01000080    OQV15950.1    KQ982971    KYQ48616.1    ABQF01060766    KK636450    KFV58687.1    AADN05000033    QUSF01000203    RLV87417.1    AERX01001030    AERX01001031    KL447876    KFO78146.1    KL225654    KFM01394.1    AGTO01011876    KK719059    KFO61145.1    MUZQ01000313    OWK52916.1    KK929278    KFQ44389.1    KB743777    EOA97100.1    QRBI01000204    RMB93833.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000235965    UP000027135    UP000036403    + More
UP000215335    UP000000311    UP000002358    UP000007266    UP000000305    UP000076858    UP000285301    UP000245037    UP000192223    UP000078540    UP000261640    UP000078541    UP000264820    UP000005205    UP000265020    UP000261660    UP000007303    UP000261460    UP000007635    UP000007755    UP000265160    UP000261560    UP000264840    UP000265080    UP000257160    UP000265100    UP000261360    UP000246464    UP000265120    UP000261580    UP000075809    UP000007754    UP000265200    UP000000539    UP000276834    UP000005207    UP000053760    UP000053286    UP000016665    UP000052976    UP000197619    UP000257200    UP000269221    UP000001038   

PRIDE

H9JWD7   

Pfam

PF00271   Helicase_C        + More
PF04408   HA2
PF00270   DEAD
PF07717   OB_NTP_bind
PF00035   dsrm

Interpro

IPR027417   P-loop_NTPase        + More
IPR007502   Helicase-assoc_dom       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR001025   BAH_dom       
IPR014720   dsRBD_dom       
IPR031083   YTHDC2-related       
IPR011709   DUF1605       

SUPFAM

SSF52540   SSF52540       

CDD

cd00079  HELICc
cd00048  DSRM

ProteinModelPortal

H9JWD7   A0A2H1W358   A0A2W1BD14   A0A3S2P6Z0   A0A2H1W369   A0A0N1I2R1   + More
A0A2J7QIM6   A0A2J7QIK8   A0A2J7QIM2   A0A1B6D5F5   A0A1B6E7S0   A0A067R1K9   A0A0J7N443   A0A232F3R9   E2AQI2   K7J1Y4   D6WR01   A0A1B6JUF2   A0A1B6KUX6   A0A0C9RAH5   A0A0P5HD25   A0A0N8CFU7   A0A0P5Q7S4   A0A0P5ZV55   E9FW51   A0A162SS74   A0A0P6HSL9   A0A0P6EBC2   A0A0P5W8I3   A0A3S3PG41   A0A0P5Z7N0   A0A2P8Z378   A0A1W4XGG8   A0A195BRT6   A0A1Y1M4R4   A0A1Y1M7C7   Q4SLJ6   A0A3Q3MLB2   A0A3Q3SC80   A0A1A8MCD6   A0A195EX00   A0A1B6FBX0   A0A1A8LX32   A0A1A8NWU2   A0A1Y1M649   A0A3Q2YBA6   A0A158NNZ5   A0A1A8A2H8   A0A1A8PPH4   A0A1A8I8A4   A0A1A8EQ18   A0A3Q2CIP5   A0A3Q3FMK5   H3CSX9   A0A1A8JQ21   A0A3B4G9U5   A0A0P4YBL8   G3Q113   F4WPH9   A0A1A7ZGX7   A0A0P5Y1Q1   A0A3P9DHI3   A0A0N8DVW8   A0A3B3BFP7   A0A1A8PDE3   A0A3Q3BRL1   A0A3P8S1Q8   A0A3Q1BQF0   A0A3Q1CR53   A0A1A8HIY7   A0A3P8QLQ4   A0A3Q3CKF4   A0A3B4X271   A0A2U9BJ26   A0A3P8VLC7   A0A3Q4MPV5   A0A1A7XCB5   A0A1A7YGG4   A0A1A8J218   A0A1A8UL30   A0A1W0WL65   A0A151WL97   H0YPC0   A0A093FLT7   A0A3P9HNX1   A0A3Q2TSG4   A0A3L8RUM3   I3JTA5   A0A091G9X6   A0A087QJJ0   A0A3Q2TWE1   U3JH43   A0A091FID0   A0A218UGY0   A0A091RQJ4   R0JIJ9   A0A3Q1GXA1   A0A3M0J4J1   H2MS81  

PDB

5VHD     E-value=2.56381e-80,     Score=763

KEGG

101745709    K13185 ATP-dependent RNA helicase DHX30 [EC:3.6.4.13] | (RefSeq) putative ATP-dependent RNA helicase

GO

GO:0005524   GO:0004386   GO:0003676   GO:0016787   GO:0003682   GO:0003723   GO:0002151   GO:0005634   GO:0034459   GO:0004003   GO:0016021   GO:0007417   GO:0042645   GO:0004004   GO:0005829   GO:0035770   GO:1902775   GO:0003725   GO:0046872   GO:0033557   GO:0005839   GO:0051603   GO:0046835   GO:0006281   GO:0006259  

PANTHER

PTHR18934:SF100  

Length:

616

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.64863

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00046

outside

1  -  616

 

 

Pi

190.900786

Theta

146.344313

Tajima's D

0.764471

CLR

0.19825

CSRT

0.585870706464677

Interpretation

Uncertain