SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16400
Pre Gene Modal
BGIBMGA013851
Annotation
PREDICTED:_putative_ATP-dependent_RNA_helicase_DHX30_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.665 Nuclear   Reliability : 1.9
 

Sequence

CDS
ATGGCGAATAATGGAAAAGAAAAGCAGAACAAATCCTCATTTCTTTTTTTTTACAGTTTTCAAAAACTGGCGAAAACCACAATATTTAGTAGTAATAAAAACATATTTACACAAGCCAATAAATTAAAAATCAACTTCCCTCTCAGAAAATTATCTTCAAACATATTGAGTGGAGATGAAAGAAATTTGCAGAGCGCTCAAGAAGAAAAAGATCTCAATATAATATCAAAAATATTTCCGCAACCTCGTGTAACACTTAATATATTACAATCGAGGACTCCAGAGAAAGTGTTTGAAGTGTTTTATAAACAGAACATAGTGACACTGAAAGGGAAAAAGAAGAAAACGTTACAGAATGATTGGAACTGCACATATGCTTTCGTTTGGCCAGAGAAGGTTAAATTTGAAAGCACCGCAATTTCAAAACGTATGGCCGCAGAAAAGGCTGCGTCAAAGGCCCTGCATTGGCTGTACATCAACAATCGAATAGACGAAAACGGAGCGCCAATATATGACAGAGACGTATTGAATGACATCAGGGGTAATCTGAATGAACCAATACAGATTACCATCAGCGATAAATCAATGGAGAGAATTGACAAAATATGGAATGATTATGAGAGTGGAATAAGTAGAATCTCGTAA
Protein
MANNGKEKQNKSSFLFFYSFQKLAKTTIFSSNKNIFTQANKLKINFPLRKLSSNILSGDERNLQSAQEEKDLNIISKIFPQPRVTLNILQSRTPEKVFEVFYKQNIVTLKGKKKKTLQNDWNCTYAFVWPEKVKFESTAISKRMAAEKAASKALHWLYINNRIDENGAPIYDRDVLNDIRGNLNEPIQITISDKSMERIDKIWNDYESGISRIS

Summary

Similarity
Belongs to the serpin family.
Pfam
PF00270   DEAD        + More
PF04408   HA2
PF00271   Helicase_C
PF00079   Serpin
Interpro
IPR014001   Helicase_ATP-bd        + More
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR027417   P-loop_NTPase       
IPR001650   Helicase_C       
IPR007502   Helicase-assoc_dom       
IPR036186   Serpin_sf       
IPR042178   Serpin_sf_1       
IPR042185   Serpin_sf_2       
IPR023796   Serpin_dom       
SUPFAM
SSF52540   SSF52540        + More
SSF56574   SSF56574       
Gene 3D

Ontologies

Topology

Length:
214
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.18941
Exp number, first 60 AAs:
0.18941
Total prob of N-in:
0.32602
outside
1  -  214
 
 

Population Genetic Test Statistics

Pi
302.482142
Theta
189.446694
Tajima's D
1.883286
CLR
0.088083
CSRT
0.861256937153142
Interpretation
Uncertain
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