Silkworm Genome Informatics Database

Gene

KWMTBOMO16397 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013841

Annotation

PREDICTED:_autophagy-related_protein_13_homolog_[Papilio_polytes]

Location

Bomo_Chr28(-):8468561-8472874 View in EpiBrowser

Full name

Autophagy-related protein 13

Location in the cell

Nuclear Reliability : 2.882

CDS

ATGGACAAAAGTGCTACATTACAAGAGCTCGGCTACAAAGACGAGAATGAGTTGAGAGAGACAATATATGACTATTTGAGGACAATTCGAGACCCCGAAAAGCCAAATACGCTTGAAGACTTGAAGGTCGTGTACGAGGAAGGAATCTTTGTGAAGGAACCAACTGCAGATAAAGTGCCCGTTTTACGTGTGGAGTATAATCCAACAGTGCCCCATTGTTCGCTGGCCACACTAATCGGACTTTGCATTCGTATTAAAATATTAAGGTCTATCCATCATCCTGTGAAATTGGACATTTTTATCAAGAAAGGGGCACATACCACTGAAGATGAAATCAATAAGCAGATCAACGACAAGGAGAGGATTGCAGCTGCAATGGAGAATCCCAATCTAAGAAACCTGGTGGAAAACTGCATAGCCGAAGAGGATAAACCAAAGACGTCAGACACTGATTGGTTTAATTTACAGATACCAGATTCCTCTGAAGTAAATCAGGCAACTAAGAATGCTTTACCTTCGGATCGTGTACTGGAGACGATAAAATCACAATTACATGTAGAAATATCTGTTCAAACAGAAGATGGAGATGAAATGGTACTAGAACTCTGGACTCTTCAGCTAGACGAAACCCAATTCGATACATCATTGAAGGCAATGAACACAGTGTATTTTAGAATGGGCATATTGTTAAAATCTCTTATAACTATAACAAGGATCACACCGGCATATCATTTGTCAAGGAAACAGAGACTGGAATCATTCACTATATTCTACAGAGTTTACAGTGGCGAGGCAAAATTGAAAGCTCTTGGTGATTCAGTGAAAACTATTCAAGCCGGCCTCTTAAAAACACCATTAGGTGCTTTAGTCTTCTCGGTAACGTACCGTACAAATTTTTCAATAACTCCTAACCGTTCAGACAATAACAAAGCATTGTTATTAAAGAGTGATCACTTTGAATTGAGTCCGAAACATGTCATATTTGAATCAAAAAAGAAGAAAGAAGAAAAAAGAGAGTCGAAACCTTCAGGACCCATCGATTTGGACAAGCCCTTACGCTTAGCTGCTTTTGTAGATGAAACCTTAGTTAAGAGGACATTTGAAGAATTCTACACGAAAATTCCTATTCCTGATCACTACAGACCTGAAAAATTGCCTGTATCTCCTGTTAAAGAAAAGGAAATCATGTCTAAGAGCACACAAGAATTAGATGACAGTGCAGCATCAAAGAGTCCGAATTCTTTAGAGATGCCACCAAAGAAATTCTCTGGATTCCGTCACGAAAACGAACCACCAATAAAACTGTTATTGTTCCCTTTTGCTGACACACATCCTATACGAGAACTAGCCGAGTTTTACAAAGATTTCTTTAATGCGCCACACTTGAAGTTGACAGATGAGCTAACACAATCGAACAAAAGCTTAGAGCCTGTTTTAGAAGACGTAGAACTAACCAACGAAGATTTGTCTAAAGATTTGGAGCTGTATGAGAATTCAGTTGTTGAGTTTGATGAATTGTTGGCCGACATGTGTAGATCGGCTGAGTGGAGTGGGAATTAA

Protein

MDKSATLQELGYKDENELRETIYDYLRTIRDPEKPNTLEDLKVVYEEGIFVKEPTADKVPVLRVEYNPTVPHCSLATLIGLCIRIKILRSIHHPVKLDIFIKKGAHTTEDEINKQINDKERIAAAMENPNLRNLVENCIAEEDKPKTSDTDWFNLQIPDSSEVNQATKNALPSDRVLETIKSQLHVEISVQTEDGDEMVLELWTLQLDETQFDTSLKAMNTVYFRMGILLKSLITITRITPAYHLSRKQRLESFTIFYRVYSGEAKLKALGDSVKTIQAGLLKTPLGALVFSVTYRTNFSITPNRSDNNKALLLKSDHFELSPKHVIFESKKKKEEKRESKPSGPIDLDKPLRLAAFVDETLVKRTFEEFYTKIPIPDHYRPEKLPVSPVKEKEIMSKSTQELDDSAASKSPNSLEMPPKKFSGFRHENEPPIKLLLFPFADTHPIRELAEFYKDFFNAPHLKLTDELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMCRSAEWSGN

Similarity

Belongs to the ATG13 family. Metazoan subfamily.

Uniprot

A0A0L7KI75 A0A2A4JXB2 A0A194QEL5 A0A0N1PIT3 A0A1E1WL78 A0A2H1W5V8 + More
A0A1J1IX18 A0A1L8DV56 A0A1L8DVK6 U5EL05 A0A2P8Y802

Pubmed

26227816 26354079 29403074

EMBL

JTDY01009683 KOB63047.1 NWSH01000450 PCG76328.1 KQ459054 KPJ03922.1 + More
KQ460047 KPJ17991.1 GDQN01003364 GDQN01003281 GDQN01003118 GDQN01000958 JAT87690.1 JAT87773.1 JAT87936.1 JAT90096.1 ODYU01006546 SOQ48485.1 CVRI01000063 CRL04695.1 GFDF01003760 JAV10324.1 GFDF01003759 JAV10325.1 GANO01001632 JAB58239.1 PYGN01000819 PSN40375.1

Proteomes

UP000037510 UP000218220 UP000053268 UP000053240 UP000183832 UP000245037 + More

Pfam

PF01883 FeS_assembly_P + More
PF10033 ATG13

Interpro

IPR018731   Atg13_N        + More
IPR039796   MIP18
IPR034904   FSCA_dom_sf
IPR036570   HORMA_dom_sf
IPR002744   MIP18-like
IPR040182   ATG13

SUPFAM

SSF117916 SSF117916

Gene 3D

3.30.300.130 3.30.900.10

ProteinModelPortal

A0A0L7KI75 A0A2A4JXB2 A0A194QEL5 A0A0N1PIT3 A0A1E1WL78 A0A2H1W5V8 + More
A0A1J1IX18 A0A1L8DV56 A0A1L8DVK6 U5EL05 A0A2P8Y802

PDB

2M5H E-value=3.21245e-34, Score=364

KEGG

101740494 K08331 autophagy-related protein 13 | (RefSeq) autophagy-related protein 13 homolog

PATHWAY

04136 Autophagy - other - Bombyx mori (domestic silkworm)
04140 Autophagy - animal - Bombyx mori (domestic silkworm)

GO

GO:1990316 GO:0106035 GO:0006914 GO:0000045 GO:0005634 GO:0046872 GO:0003676 GO:0033557 GO:0005839 GO:0051603 GO:0046835 GO:0006281 GO:0006259

PANTHER

PTHR12377 PTHR13430

Length:

519

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.35507

Exp number, first 60 AAs:

5e-05

Total prob of N-in:

0.01549

outside

1 - 519

Pi

185.665227

Theta

210.911894

Tajima's D

-0.578398

CLR

1.006867

CSRT

0.227888605569722

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics