Gene

KWMTBOMO16371

Pre Gene Modal

BGIBMGA013799

Annotation

PREDICTED:_structural_maintenance_of_chromosomes_protein_5_[Bombyx_mori]

Location

Bomo_Chr28(+):7460266-7476949      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.548

CDS

ATGTCGGAAACTTCTAATAATATAGGAGCGAGGCCTGGCTCCATATTCAGAATTGCGTTAGAAAACTTCCTTACATATAAAGAAGTAGAGCTGTTCCCAAACACATCACTGAACCTGATCATTGGTCCCAATGGAACAGGGAAGTCTACGTTTGTCTGTGCAATCATACTTGGACTATGCGGTAAGCCCCAACTTACGGGCCGATCAAAAAAGATAAATGACTATGTGCGCACTGGATGCGAAAAGGCAAAAATTGAGATAGAATTATATAAGGAACCGGGTGAAAGAAATGTGATTATAACGAGGACTTTCAATTTGCGAGGAGAGTCTTTGTGGGCGATTGACTATAGAAGTGTGAAAGAAAAAACTGTTCAGGATTTAGTAACTAGTTTGAAAATACAAGTGGACAACCTATGCCAGATGTTACCTCAAAACCGAGTCCAAGATTTCTGCCAAATGAACCCTCAGGAATTGCTCAAGAGAACGCTAGCAACGATCGGTGACCAGGAGGCCATAGGGCAAATGAACAATTTGGTAAATTACAGAACCGAACAAAGACAGTTGGACAACAAAATGCAAACTAACACCAAATTAATCGAGGAACAGATGACATTACATGAAACCTTAAAAAAGAAAATAGAAGCTATGCGACATCGAAACGAGTATGAAAAGAAAATTAGTATATGTGAAAAGAAGAAACTGTGGCTTCAATATAAACTGTTAAGTGCCAGAGCGGCGCAGACCGAGACTCGCATGGCAGAGGCTCTGAAAATAGTCAAGGCTAGTCACAAGAAGAAGCAGCCATTGGAAATGGCTGTACAGAGATTGAGAGAAGAAAAAATCAAATTGGAACAGGAAAGAGCAACAGGGAGTAGAAAAATAAATGAGCTAGCGGATAAAGTGAAAGAGCTGCTAAACGGCATCCAGGACTACGATAGACAGATCAAGGAGGTGGACCGCGCTTTTGAGGAGAAGCTGCAGAGGCACAGGAATAGAGAGAGAGAGTTGGTCGAGGCCAGAACGAAACTCGACAAACTGAAGAACGACAGAACTAGCCTCATTGAGAAATTTGGCGACGAGAAAATAGCAAGTGAGAAAGCAAGAGCGCTGAGGGAACGTATAAGCGAGATCCAATCACAAATCCACAGCATTCAGAGGAGCAAAGCCAGGAAGGAGATGGAATATGAACAGCAGACTCTACCCAACCTTAGGATATTGAAAAACAAATTAAGGAAATTAGAAGACGTCGAGACGAAGCGTTTAGAGACTTTGAAAGAATACAGCGAGGACACCTACAAGGCGCTGGAATGGCTCAACGAGAACAAGGAGTTGTTCCATGACCAGGTCTACGGGCCCATGATGCTCGAGCTGAAATTCACGCATCCGGAGACCGCCCGCTACCTCGAGTCGACGGTCTCCAGCAAGGACCTGGTCGCCTTCACGTTCCAGTCCAGCCGCGACATGAACCTCTTCCTGCAGAGGGTCCGCGAGGAGCTGCAGCTGCGCGCCGTCAGCGCCCTCTGCAGCCGCGCCGGGGACTTCAGCGCGCCCCACCACGACATCAGGGAACTCAGCTACCTCGGGTTCCAGAGGACCTTGGTGGAGGGCATAGCGGCGCCGGGCCCGGTGCTGCGGTACCTGTGCGAGCAGTACCAAGTCCACAGGATCCCCATCGGGAACGACCACACGTACCACCACAGCGAGAACGTGCCGGATCACGTCACGCTGTTTTTTACAACGCGGCACCGGTTCAGCGTGCGCGTGTCGCAGTACAGCGGCGCGCGCGCCAGCACGGTGGGCGAGGTGCGGCCGCCGCGCCTGCTTGCCAACGCGCGCGACGCCGACCTCATCCGCACCTGCGCGCTACAATTGAAAACATTAAATGCGACCTCGGAAAGCCAATTGGCCGCCATCAAGAGTCTGGGAGATCACATCTCGGAGCTGGAACAAAGGCAGGGCCAACTAAATAATGAATTGAAAGTTATTAAAGACAATGCATCAAAGATCGCAGAGATATCGTGCCAAATAAGAGTTCAGGCGAGGAAAGTGGAGGGCATCGAGAACGAGGAGTCCTTCGACGTCGCCGCCGAGTCGAGCCGCGCCGCCGCACTGCGGGCCCGCGCCGCCGCCGCCCAGCGCCGCCTGCACGCGGGGGGCGCGGGGGCGCTGCGCCGCCTGCACGCCGCCGCCGCCGCGCCCGCGCTGCTCAAGGTTAAACTGGAGATAATACGCGATGAGATCGTTCAACGGGAATCAGAATTGATCGATCTGAGAAACGAATTGGACGAAGCCAAGAGATCCTTGGAGCTGGTGCAGACGCAGCACGCTGAAGCTCAGTCGAGGGCGGCCGCCAAGCTGTCTCAGGTGCGGGCTCGCTGCGGCGCCGCGGACCCCGCCGACCCCGCCTCCCCCCTCGCGGCGCTGTTCCGCGACCTGCCGGACGAGCTGGACGCGCTGGCCGAGCGCTGCTACGAACTGCAGACCAGCGTCGACTGTATGGACAAGGAGACCGGGAACGTGATAAAGGATTACGAGGAATGCGAGAAAGCGATAGAGGCTCTCCAAGCTGAGAACAAGAATGTTGACCGACAGAACCAGACCTTGCTACGGCGGATGGACACGCTCAGCACGCAATGGCTGCCGACCGTCGAGAAACTTCTCCAGGAGATCGACAAACGTTTCGGCGAGATGTTCGCGTTGCTGAACTGCGCCGGCGAAGTGAGACTCGACAAAGGGAACAGCGACGAGGACTACGATAAGTACGGCGTGGTCGTACTGGTGAGGTTCCGGGAATCTGAGGAGTTGCAGCCGCTCTGCCGCAAGAGGCACTCCGGGGGGGAGCGCGCGCTCTCCATCGCGCTGTACCTCATGGCCCTGCAGAGGCTCTTCACAGTGCCCTTCAGATGCGTGGACGAAATAAATCAAGGCATGGACGAGATCAATGAACGCAAGATGTTCCAACTCCTGGTCCAAGTGACGAGTGAATGTGAGAACTCCCAGTACTTCCTGTTGACGCCCAAACTGCTGTCCAATCTGGAGTACAACGACAAGATAATGGTCCACACCATCATGAACGGGAAACACGTCATGAGATATAAAGAATGGGACCACGCCACGTTCGTGCAGAGGGCACGGCAGCTAAGCAGATCCTGA

Protein

MSETSNNIGARPGSIFRIALENFLTYKEVELFPNTSLNLIIGPNGTGKSTFVCAIILGLCGKPQLTGRSKKINDYVRTGCEKAKIEIELYKEPGERNVIITRTFNLRGESLWAIDYRSVKEKTVQDLVTSLKIQVDNLCQMLPQNRVQDFCQMNPQELLKRTLATIGDQEAIGQMNNLVNYRTEQRQLDNKMQTNTKLIEEQMTLHETLKKKIEAMRHRNEYEKKISICEKKKLWLQYKLLSARAAQTETRMAEALKIVKASHKKKQPLEMAVQRLREEKIKLEQERATGSRKINELADKVKELLNGIQDYDRQIKEVDRAFEEKLQRHRNRERELVEARTKLDKLKNDRTSLIEKFGDEKIASEKARALRERISEIQSQIHSIQRSKARKEMEYEQQTLPNLRILKNKLRKLEDVETKRLETLKEYSEDTYKALEWLNENKELFHDQVYGPMMLELKFTHPETARYLESTVSSKDLVAFTFQSSRDMNLFLQRVREELQLRAVSALCSRAGDFSAPHHDIRELSYLGFQRTLVEGIAAPGPVLRYLCEQYQVHRIPIGNDHTYHHSENVPDHVTLFFTTRHRFSVRVSQYSGARASTVGEVRPPRLLANARDADLIRTCALQLKTLNATSESQLAAIKSLGDHISELEQRQGQLNNELKVIKDNASKIAEISCQIRVQARKVEGIENEESFDVAAESSRAAALRARAAAAQRRLHAGGAGALRRLHAAAAAPALLKVKLEIIRDEIVQRESELIDLRNELDEAKRSLELVQTQHAEAQSRAAAKLSQVRARCGAADPADPASPLAALFRDLPDELDALAERCYELQTSVDCMDKETGNVIKDYEECEKAIEALQAENKNVDRQNQTLLRRMDTLSTQWLPTVEKLLQEIDKRFGEMFALLNCAGEVRLDKGNSDEDYDKYGVVVLVRFRESEELQPLCRKRHSGGERALSIALYLMALQRLFTVPFRCVDEINQGMDEINERKMFQLLVQVTSECENSQYFLLTPKLLSNLEYNDKIMVHTIMNGKHVMRYKEWDHATFVQRARQLSRS

Uniprot

A0A2H1W2E1   A0A212F8L8   A0A0N0P9C4   A0A067RH32   Q16RL3   A0A1Q3F742   + More
A0A1Q3F712   A0A182HE17   A0A232FBU9   K7IQT1   A0A1S4FRP3   B0WYP3   A0A336KDQ1   A0A336MNE2   D6WRS7   E2A038   A0A3L8DIG5   A0A182VLR7   A0A182WX64   A0A1Y1N6V5   A0A182LNW4   A0A182HN42   A0A182RHR0   A0A182MXM2   Q7PV59   A0A2A3E9A1   A0A182TG61   W8BLT3   Q8I950   A0A034VL56   A0A084VEY7   A0A182QYD2   A0A1S3GY52   A0A182PUN3   W8C1Z6   A0A182FBF2   A0A182WEM4   A0A182YNH3   A0A182IWM0   A0A182KE75   A0A1V4KCV6   A0A182SRW3   W5JHJ0   F6Z1K2   A0A2C9K293   A0A1B0CS84   A0A3B4ZQ12   A0A3Q2U1Z1   H2ZZN0   A0A146MZB0   A0A3Q7WQI3   A0A3Q1EGV1   K7FR05   A0A146W8X2   A0A182LZF6   A0A1L8HP39   A0A2I0MFS0   A0A1B0GQF2   A0A091FLX5   A0A091WH05   U3IPC5   A0A3Q1G6T1   A0A3P8ULL6   A0A3P9BDT1   A0A0K8VQ12   A0A0K8W7R6  

Pubmed

22118469    26354079    24845553    17510324    26483478    28648823    + More
20075255    18362917    19820115    20798317    30249741    28004739    20966253    12364791    24495485    14660695    25348373    24438588    25244985    20920257    23761445    20431018    15562597    9215903    17381049    27762356    23371554    23749191    24487278    25186727   

EMBL

ODYU01005893    SOQ47249.1    AGBW02009696    OWR50096.1    KQ459547    KPJ00019.1    + More
KK852639    KDR19631.1    CH477704    EAT37055.1    GFDL01011688    JAV23357.1    GFDL01011767    JAV23278.1    JXUM01130857    KQ567633    KXJ69342.1    NNAY01000475    OXU28125.1    DS232195    EDS37153.1    UFQS01000239    UFQT01000239    SSX01848.1    SSX22225.1    UFQT01001390    SSX30333.1    KQ971354    EFA05955.1    GL435551    EFN73171.1    QOIP01000007    RLU20141.1    GEZM01011169    JAV93613.1    APCN01001834    AAAB01008986    EAA00424.3    KZ288317    PBC28307.1    GAMC01006778    JAB99777.1    AJ535207    CAD59407.1    GAKP01016397    JAC42555.1    ATLV01012354    KE524784    KFB36531.1    AXCN02001064    GAMC01006779    JAB99776.1    LSYS01003700    OPJ82306.1    ADMH02001485    ETN62375.1    AAMC01047916    AAMC01047917    AAMC01047918    AAMC01047919    AAMC01047920    AJWK01025799    AFYH01125448    AFYH01125449    AFYH01125450    AFYH01125451    GCES01162312    JAQ24010.1    AGCU01194619    AGCU01194620    AGCU01194621    AGCU01194622    AGCU01194623    AGCU01194624    AGCU01194625    AGCU01194626    GCES01060801    JAR25522.1    AXCM01005319    CM004467    OCT97869.1    AKCR02000015    PKK28524.1    AJVK01007177    AJVK01007178    KL447131    KFO70159.1    KK735464    KFR14148.1    ADON01057353    ADON01057354    ADON01057355    ADON01057356    ADON01057357    ADON01057358    ADON01057359    ADON01057360    ADON01057361    ADON01057362    GDHF01011338    JAI40976.1    GDHF01005404    JAI46910.1   

Proteomes

UP000007151    UP000053268    UP000027135    UP000008820    UP000069940    UP000249989    + More
UP000215335    UP000002358    UP000002320    UP000007266    UP000000311    UP000279307    UP000075903    UP000076407    UP000075882    UP000075840    UP000075900    UP000075884    UP000007062    UP000242457    UP000075902    UP000030765    UP000075886    UP000085678    UP000075885    UP000069272    UP000075920    UP000076408    UP000075880    UP000075881    UP000190648    UP000075901    UP000000673    UP000008143    UP000076420    UP000092461    UP000261400    UP000265000    UP000008672    UP000286642    UP000257200    UP000007267    UP000075883    UP000186698    UP000053872    UP000092462    UP000053760    UP000053605    UP000016666    UP000265120    UP000265160   

Pfam

PF13476   AAA_23        + More
PF02463   SMC_N
PF13175   AAA_15

Interpro

IPR027131   SMC5        + More
IPR038729   Rad50/SbcC_AAA       
IPR027417   P-loop_NTPase       
IPR003395   RecF/RecN/SMC_N       
IPR041685   AAA_15       

SUPFAM

SSF52540   SSF52540       

ProteinModelPortal

A0A2H1W2E1   A0A212F8L8   A0A0N0P9C4   A0A067RH32   Q16RL3   A0A1Q3F742   + More
A0A1Q3F712   A0A182HE17   A0A232FBU9   K7IQT1   A0A1S4FRP3   B0WYP3   A0A336KDQ1   A0A336MNE2   D6WRS7   E2A038   A0A3L8DIG5   A0A182VLR7   A0A182WX64   A0A1Y1N6V5   A0A182LNW4   A0A182HN42   A0A182RHR0   A0A182MXM2   Q7PV59   A0A2A3E9A1   A0A182TG61   W8BLT3   Q8I950   A0A034VL56   A0A084VEY7   A0A182QYD2   A0A1S3GY52   A0A182PUN3   W8C1Z6   A0A182FBF2   A0A182WEM4   A0A182YNH3   A0A182IWM0   A0A182KE75   A0A1V4KCV6   A0A182SRW3   W5JHJ0   F6Z1K2   A0A2C9K293   A0A1B0CS84   A0A3B4ZQ12   A0A3Q2U1Z1   H2ZZN0   A0A146MZB0   A0A3Q7WQI3   A0A3Q1EGV1   K7FR05   A0A146W8X2   A0A182LZF6   A0A1L8HP39   A0A2I0MFS0   A0A1B0GQF2   A0A091FLX5   A0A091WH05   U3IPC5   A0A3Q1G6T1   A0A3P8ULL6   A0A3P9BDT1   A0A0K8VQ12   A0A0K8W7R6  

PDB

5XEI     E-value=3.2146e-08,     Score=143

KEGG

101740444    K22803 structural maintenance of chromosomes protein 5 | (RefSeq) structural maintenance of chromoso

GO

GO:0007062   GO:0000724   GO:0030915  

PANTHER

PTHR45916  

Length:

1050

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.18411

Exp number, first 60 AAs:

0.16256

Total prob of N-in:

0.00734

outside

1  -  1050

 

 

Pi

308.695225

Theta

168.916278

Tajima's D

3.409309

CLR

0.199657

CSRT

0.991600419979001

Interpretation

Uncertain