Gene

KWMTBOMO16359

Pre Gene Modal

BGIBMGA013794

Annotation

PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Bombyx_mori]

Location

Bomo_Chr28(+):6891154-6928615      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.516 Nuclear   Reliability : 1.607

CDS

ATGACCCAACATTTCAGTGGACAGATCGTTACGCCCGGTGATGACGTAAGCCTTCAGTGTACAGCTACAGCAGAAAGACCACCTAGATTCATTTGGGAAAGGGACGGTGTGACGATCACATCAAATACTGATCAAAGGTACACCCTTGGCCAAATGATGTCTGGAGTCGGAGTGGTGTCACAAGTGAACATCACGCGCTCAAGAGTCGAAGACGGCGGGGTCTACTCTTGCACTGCTTTAGAAGGAGACACGAAGATAACGCATTCAGCTCGTATAGATGTTTACGGACCGCCGTATATTCGGTCTCTACCACCGATAAAAGTACAGAGCGGAGAATCTTTGAAGTTAAGATGTCCCTACTATGGATATCCTATCAGCAAACTTGAATGGGAGCATAAAGGCGTGAAACTGAGTTCGACTGCTTTACCACAGCACGTTCGTTACAAACGTACCTTTACCACCGGCAAGAGAAGAAGAAGAAAACGACAGCTATACGAAAGAGATGAAAACGGAGTACTGAATTTACCTAAAGTCGTTAAAGAGGAGAGCGGGGATACATACACTTGTGTCGTGTATAGTCCTTCGGGAGAAATGGCTAGACGATCTTTCGAGATTCAAGTTGTAGAAGCACCTGAATTGGACGAACTAAGGGTCGGATCTGGACTGAAAGAAGGTCAAATAGTACAGATAACATGCAACATTGTCAGTGGAGATCCACCGATCTACTTCTCCTGGCTGAAGGATGGGAAGAAGATACCTCCTAGTTTGAAAATCACAGAAAGGAGTTCTGAGCTATTTAGCGTGCTGATTATAAAACGGGTAGCTTTGGAACACTGTGGAAAGTATACGTGCATCGCCACCAATCACGTGGGGAAGGTGAACCAAACCACGGACCTGTACATCAGTGTGGCCCCAAAGTGGGTGGACGAGCCAACGAATACATCCTTGCTATTAGGCCAAAGAGGCATGGTCTATTGCAATGCGAATGGATATCCAACCCCGCAAATACATTGGATGAAAAGAGACGCGACCCTTGGTATTTGGAGGCCAGTTTTGGATTTAGCCGGGGGTGGAGTGATCAGCTATCCCAACGGTACTCTAATCATAGAGGTTGTATCTCTGTCAGATGAAGGCCTGTACGCTTGTAATGTGGAGAACGGCGTAGGAGAAGCATTGAATAAGAAATTGTGGATTAGCGTTAACAAACCAGTCCACTTTGAATCAATAGGAGCTAATTTGACGACAAAGGCAGGACTTCCGGTGACCATTTCTTGTCGTCCACTCGGAGACAGTCCTATTAGAGTCAAATGGAGTTTGGACGGCAAACCTTTGGATTTTCCATCGTCAAGAATAACAATCTCAGAGACGAATACGCATAATGGGCTGAGCAGTGTCCTAAACATCAATTACGTGGAGAGTCGTGATCGGGGCTACTACGAATGCCGAGCTAGTAATCCTTATGGCGTCGCTGCTTATAATGTGAGGCTTAATATTCTAGAGCCACCGTCGTCTCCGGTGGAATTGCAATTAGATCACGTGTCTGGTAGCACAGCCAAATTGTCTTGGAGGGACACGATCATTGCGCACGTGGAGTACTACACTGTCCAGTTTACTAACAACGACTTCATGATGTGGGATTCAGCTAAGACCGTCAATGTTACCAGAGAAGATGGCCTCATTCGCCAGACTGTAGAGCTTACTGAACTTCAACCGTTTACGGAGTACCGGGTGAGGGTTGCAGCTGGAAACCAAGTAGATTTGAGTTCTTACACGCAACCCATTCATTTCACCACGCAGCAAGAAGCGCCCTCATCAGCTCCCATGGGAGTACAAGTGCAACAGTCTGATTCTCCTGGAGAACTGATGATTCGTTGGCAGTCACCGCCCCGGGACACACATAATGGACCTTTACAGGGATATCACGTAAAGGCCGTGCCATTTATTAGCGGAGATTCAGTTCCGAATGAGGCTCAAACGAAAATAATAAAAGTAATCGCAAGAAACGGAAAACAGGAAACAGTTCTGGGTGATCTACTCAAAAATGTGAGGTACGGAGTTTCAGTGAGTGCTTTTAATTCAGCAGGGAACGGACCATTCTCTGTGCCAGTCTATCAAACGACTAGAGAAGGAGCGCCAGAACAAGCTCCATCTGGTGTGGAATGCAGAGGAGTTTCATCCACGTCATTGAGAGTCAGCTGGCAACAGATAAATTCACGTGGAAGTTCTTTACTCGGCTATTTCGTGTACTACAGTACTGAAGACAGTTTGTGGTCGAACACAAGCACACCGCACACGGAGTTGTATATCCAGGGATTGTTGAAATACACGAATTACTCAGTGAAAGTAGCAGGATTCTCTAATTACGGACTGGGACCATTCTCTTATCCAATCATTTGTATTACGCTACAGGATGTTCCCGGGCCTCCTCCATTGATTAAAGTACTGGTATCGTCATCCACATCCTTGCTCGTCAGCTGGAAGAGGCCAGAGCAACCGAATGGCGAGATCACGCATTACACTGTTCACGTTAAGCCAGTTTCTAGTACCAACGCTCCACAGAGTTATAGGGTGGATGCGACACACGAATCCGCACTGACACGAGAGTCATCCTATTCTATAACTGGACTGATCACTGGGAGACAGTACGAGGTGTTCGTTCGTGCCCATACAACGGCAGGGGAAGGAACTCCGAGTAGGAGAGTCCATGCTGATTTATCTGCTAAAGTGGTAGCAGGAGTCTCATCACTGGGTGGCTGGGTAGCAGTAGGCGCGGGGAGCTCTGTGCTGTTGGCGTGCGCTTGTGTGGGCGTACCGGCGCCACGTACTGTGTGGTACAGACACCACCACATCATAACCCATCATCCTAGATACACGAGAAACCACGATGACAGCTTACTCATTAACAATATCGACCAAACTCTAAGTGGCAACTACACATGCCTAGCGAAAAATCTATACGGCTCTGATTCCGTTTCGTATGAAGTGACAGTACTACCGACGCCAGAGCCTCCGACCTTAAGGATTACAGCGCATAAGGATTCTCTACAATTACAATGGGATCCTCCTAGAAAAATAGCGGGAAAAGCGCAGAAAATCAGTTACAACTTGACGTGGAAAGAAGCCGACGGTTCCTGGCAGGACGCTTGGTCCAGTCGTGGGACGACGCTGCAAGGGATACAAGAGTACACATTACAAGGACTAAAGTGCGGTACCAAGTACTCTCTGAGGATCACCGCTGCTAATAGCGTTGGGTCTTCACAGCCGGCCTACTTTGACGCCAGTACTTTGGGTGGTGTGCCTATTGCTCCATCAAGCACCGAATGGTTTTGGAGCAATGCTACCCACATATACATACAGCTCAGCGGATGGGACGACAACGGCTGCGAGATCACAAGATTCGAAGTCGATTACCGGGAGTACGGTTCGAAGAGTTGGAGACGAGTGGATACTGGAATTCCTCCTATAGAACAACAATGGAATTACATGTCCTCGATACTAAATCAGCCGAACTCATTCGTGATCGGAGATTTGAATGCCGCCCAGTGGTACCAGATTCGGGTTTCCGTCGAGAACTCAGCGGGAGTTGCCACTTCGATTTATAACTATGCGACTTCTACGTTGTTCGGTGAGACAATCGGCCCTCCTTCAGAATACTTTGACATTAACATGCTAGTAATCATATGCAGTTCTATCCTGCTGATTATATGCTCAATAACGTGCGTTTATATTCTGGTAAAGAGACATAATCACAACAATATGACAGAATATCGGAATTCCCTAACGGTTGAATCTAAGTCGGAGCGTAGTGATGTACCCGCGAATACTCCTCAGAGCGTACCTTCGGATATCAACAACAGAGTGTACAGTACGCCGGTACATTTGACTGCCGATACCAAACACGAACTATACGAGATCAGTCCTTACGCACAGTTTGCGTTGGGCTTCAGAACCTTTGGCCACGTGGAAAATCAAGAAGTACCGAGCAGAATTCATTTGCCGAGTAACAGCAAGTCAAGATATGATACTGGTAGAAACCAGCTTCCAAATGAGATCGGAGTCAGAAGAGAGCGATTGCATCTCGAGGACGACAACTTTGAAGAGTGCTCCTAG

Protein

MTQHFSGQIVTPGDDVSLQCTATAERPPRFIWERDGVTITSNTDQRYTLGQMMSGVGVVSQVNITRSRVEDGGVYSCTALEGDTKITHSARIDVYGPPYIRSLPPIKVQSGESLKLRCPYYGYPISKLEWEHKGVKLSSTALPQHVRYKRTFTTGKRRRRKRQLYERDENGVLNLPKVVKEESGDTYTCVVYSPSGEMARRSFEIQVVEAPELDELRVGSGLKEGQIVQITCNIVSGDPPIYFSWLKDGKKIPPSLKITERSSELFSVLIIKRVALEHCGKYTCIATNHVGKVNQTTDLYISVAPKWVDEPTNTSLLLGQRGMVYCNANGYPTPQIHWMKRDATLGIWRPVLDLAGGGVISYPNGTLIIEVVSLSDEGLYACNVENGVGEALNKKLWISVNKPVHFESIGANLTTKAGLPVTISCRPLGDSPIRVKWSLDGKPLDFPSSRITISETNTHNGLSSVLNINYVESRDRGYYECRASNPYGVAAYNVRLNILEPPSSPVELQLDHVSGSTAKLSWRDTIIAHVEYYTVQFTNNDFMMWDSAKTVNVTREDGLIRQTVELTELQPFTEYRVRVAAGNQVDLSSYTQPIHFTTQQEAPSSAPMGVQVQQSDSPGELMIRWQSPPRDTHNGPLQGYHVKAVPFISGDSVPNEAQTKIIKVIARNGKQETVLGDLLKNVRYGVSVSAFNSAGNGPFSVPVYQTTREGAPEQAPSGVECRGVSSTSLRVSWQQINSRGSSLLGYFVYYSTEDSLWSNTSTPHTELYIQGLLKYTNYSVKVAGFSNYGLGPFSYPIICITLQDVPGPPPLIKVLVSSSTSLLVSWKRPEQPNGEITHYTVHVKPVSSTNAPQSYRVDATHESALTRESSYSITGLITGRQYEVFVRAHTTAGEGTPSRRVHADLSAKVVAGVSSLGGWVAVGAGSSVLLACACVGVPAPRTVWYRHHHIITHHPRYTRNHDDSLLINNIDQTLSGNYTCLAKNLYGSDSVSYEVTVLPTPEPPTLRITAHKDSLQLQWDPPRKIAGKAQKISYNLTWKEADGSWQDAWSSRGTTLQGIQEYTLQGLKCGTKYSLRITAANSVGSSQPAYFDASTLGGVPIAPSSTEWFWSNATHIYIQLSGWDDNGCEITRFEVDYREYGSKSWRRVDTGIPPIEQQWNYMSSILNQPNSFVIGDLNAAQWYQIRVSVENSAGVATSIYNYATSTLFGETIGPPSEYFDINMLVIICSSILLIICSITCVYILVKRHNHNNMTEYRNSLTVESKSERSDVPANTPQSVPSDINNRVYSTPVHLTADTKHELYEISPYAQFALGFRTFGHVENQEVPSRIHLPSNSKSRYDTGRNQLPNEIGVRRERLHLEDDNFEECS

Uniprot

A0A212EZG7   A0A0N0P9C7   A0A2A4JQ07   H9JW81   A0A212F605   A0A3S2LWI1   + More
A0A194PQ02   A0A0N1PIJ2   A0A0N1I4G3   A0A212F1J3   A0A088APY9   A0A0N0BC89   A0A139WPD8   A0A139WPF3   A0A139WPP7   A0A195BJQ9   A0A151JRW6   A0A195EYM2   A0A158NJC3   A0A2J7PQK1   A0A1J1HP71   A0A2J7PQK5   A0A2J7PQP1   A0A151IA46   F4W742   A0A2W1BND6   A0A0L0C0J5   A0A3S2NBJ4   A0A336M8I3   A0A336KKP0   B4K7M7   A0A2H1VAH3   A0A3L8DRQ5   A0A0Q9X218   A0A0Q9X715   B4N9U7   A0A1W4V5H6   A0A1W4UT57   A0A0M4ETQ6   A0A1W4USR1   B4LY43   A0A0Q9WGA5   A0A0P8XZR3   B3LVQ3   A0A0Q9WFX9   A0A212FEX3   A0A1B0FNH0   K7J3G0   A0A232F8U8   A0A0R1E4W5   A0A0R1E3C0   B4PVB9   A0A0R1E506   A0A1I8Q183   A0A1I8Q151   A0A1I8Q177   B4IBG9   Q9VEJ5   A0A0R3NGP1   A0A0R3NGB7   Q7KSE9   B4G2L9   A0A3B0KAQ1   Q29A88   A8JR35   A0A0R3NG76   W8BHF6   A0A0R3NK49   A0A0L7R8H0   A0A1A9ZZV3   A0A1W7R6Y5   A0A2H1VFK8   A0A182FCX3   A0A2W1BN39   A0A182QYC3   A0A182J4M0   A0A084WCP8   A0A182VI12   A0A1B0BV85   W5JR02   A0A182RKW3   A0A1B0CHP3   N6TSR9   U4U3K5   E2A3Y9   A0A2J7PZP0   A0A182U083   A0A182WK19   A0A2S2R5A3   A0A0P5SEE5  

Pubmed

22118469    26354079    19121390    18362917    19820115    21347285    + More
21719571    28756777    26108605    17994087    30249741    20075255    28648823    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    15632085    23185243    24495485    24438588    20920257    23761445    23537049    20798317   

EMBL

AGBW02011290    OWR46880.1    KQ459547    KPJ00029.1    NWSH01000925    PCG73523.1    + More
BABH01025528    AGBW02010096    OWR49171.1    RSAL01000157    RVE45570.1    KQ459602    KPI93210.1    KQ460353    KPJ15639.1    KPJ00028.1    AGBW02010870    OWR47596.1    KQ435922    KOX68634.1    KQ971307    KYB29804.1    KYB29803.1    KYB29801.1    KQ976453    KYM85408.1    KQ978579    KYN30034.1    KQ981920    KYN32984.1    ADTU01017524    ADTU01017525    ADTU01017526    ADTU01017527    ADTU01017528    ADTU01017529    ADTU01017530    ADTU01017531    ADTU01017532    ADTU01017533    NEVH01022635    PNF18614.1    CVRI01000006    CRK88017.1    PNF18619.1    PNF18616.1    KQ978255    KYM95887.1    GL887813    EGI69926.1    KZ149956    PZC76468.1    JRES01001161    KNC24949.1    RSAL01000273    RVE43150.1    UFQS01000550    UFQT01000550    SSX04800.1    SSX25163.1    SSX04801.1    SSX25164.1    CH933806    EDW15371.2    ODYU01001341    SOQ37392.1    QOIP01000005    RLU23107.1    KRG01529.1    KRG01530.1    CH964232    EDW80662.2    CP012526    ALC46292.1    CH940650    EDW67931.1    KRF83565.1    CH902617    KPU80416.1    EDV43677.1    KRF83564.1    AGBW02008880    OWR52305.1    CCAG010010693    CCAG010010694    CCAG010010695    CCAG010010696    CCAG010010697    NNAY01000640    OXU27246.1    CM000160    KRK02722.1    KRK02723.1    EDW95788.2    KRK02725.1    KRK02724.1    CH480827    EDW44727.1    AE014297    AAF55426.3    CM000070    KRT00044.1    KRT00043.1    AAS65164.2    CH479179    EDW24064.1    OUUW01000005    SPP80648.1    EAL27462.3    ABW08696.1    KRT00045.1    KRT00046.1    KRT00048.1    KRT00049.1    GAMC01005845    JAC00711.1    KRT00047.1    KQ414632    KOC67128.1    GEHC01000744    JAV46901.1    ODYU01002306    SOQ39628.1    PZC76469.1    AXCN02001019    AXCN02001020    ATLV01022806    ATLV01022807    ATLV01022808    ATLV01022809    ATLV01022810    ATLV01022811    KE525337    KFB47992.1    JXJN01021159    JXJN01021160    ADMH02000362    ETN66827.1    AJWK01012559    APGK01020326    APGK01020327    APGK01020328    KB740193    ENN81073.1    KB631669    ERL85186.1    GL436519    EFN71841.1    NEVH01020333    PNF21807.1    GGMS01016006    MBY85209.1    GDIQ01094716    JAL57010.1   

Proteomes

UP000007151    UP000053268    UP000218220    UP000005204    UP000283053    UP000053240    + More
UP000005203    UP000053105    UP000007266    UP000078540    UP000078492    UP000078541    UP000005205    UP000235965    UP000183832    UP000078542    UP000007755    UP000037069    UP000009192    UP000279307    UP000007798    UP000192221    UP000092553    UP000008792    UP000007801    UP000092444    UP000002358    UP000215335    UP000002282    UP000095300    UP000001292    UP000000803    UP000001819    UP000008744    UP000268350    UP000053825    UP000092445    UP000069272    UP000075886    UP000075880    UP000030765    UP000075903    UP000092460    UP000000673    UP000075900    UP000092461    UP000019118    UP000030742    UP000000311    UP000075902    UP000075920   

PRIDE

H9JW81    Q9VEJ5    Q7KSE9   

Pfam

PF07679   I-set        + More
PF00041   fn3
PF00047   ig
PF10523   BEN
PF02854   MIF4G

Interpro

IPR036179   Ig-like_dom_sf        + More
IPR003598   Ig_sub2       
IPR013783   Ig-like_fold       
IPR003961   FN3_dom       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR013098   Ig_I-set       
IPR036116   FN3_sf       
IPR013151   Immunoglobulin       
IPR013106   Ig_V-set       
IPR018379   BEN_domain       
IPR013087   Znf_C2H2_type       
IPR027413   GROEL-like_equatorial_sf       
IPR003890   MIF4G-like_typ-3       
IPR016021   MIF4-like_sf       
IPR016024   ARM-type_fold       
IPR003006   Ig/MHC_CS       

SUPFAM

SSF49265   SSF49265        + More
SSF48726   SSF48726       
SSF48592   SSF48592       
SSF48371   SSF48371       

Gene 3D

2.60.40.10     1.10.560.10     1.25.40.180    

CDD

cd00063  FN3

ProteinModelPortal

A0A212EZG7   A0A0N0P9C7   A0A2A4JQ07   H9JW81   A0A212F605   A0A3S2LWI1   + More
A0A194PQ02   A0A0N1PIJ2   A0A0N1I4G3   A0A212F1J3   A0A088APY9   A0A0N0BC89   A0A139WPD8   A0A139WPF3   A0A139WPP7   A0A195BJQ9   A0A151JRW6   A0A195EYM2   A0A158NJC3   A0A2J7PQK1   A0A1J1HP71   A0A2J7PQK5   A0A2J7PQP1   A0A151IA46   F4W742   A0A2W1BND6   A0A0L0C0J5   A0A3S2NBJ4   A0A336M8I3   A0A336KKP0   B4K7M7   A0A2H1VAH3   A0A3L8DRQ5   A0A0Q9X218   A0A0Q9X715   B4N9U7   A0A1W4V5H6   A0A1W4UT57   A0A0M4ETQ6   A0A1W4USR1   B4LY43   A0A0Q9WGA5   A0A0P8XZR3   B3LVQ3   A0A0Q9WFX9   A0A212FEX3   A0A1B0FNH0   K7J3G0   A0A232F8U8   A0A0R1E4W5   A0A0R1E3C0   B4PVB9   A0A0R1E506   A0A1I8Q183   A0A1I8Q151   A0A1I8Q177   B4IBG9   Q9VEJ5   A0A0R3NGP1   A0A0R3NGB7   Q7KSE9   B4G2L9   A0A3B0KAQ1   Q29A88   A8JR35   A0A0R3NG76   W8BHF6   A0A0R3NK49   A0A0L7R8H0   A0A1A9ZZV3   A0A1W7R6Y5   A0A2H1VFK8   A0A182FCX3   A0A2W1BN39   A0A182QYC3   A0A182J4M0   A0A084WCP8   A0A182VI12   A0A1B0BV85   W5JR02   A0A182RKW3   A0A1B0CHP3   N6TSR9   U4U3K5   E2A3Y9   A0A2J7PZP0   A0A182U083   A0A182WK19   A0A2S2R5A3   A0A0P5SEE5  

PDB

3DMK     E-value=4.70726e-53,     Score=531

KEGG

101736431    no KO assigned | (RefSeq) Down syndrome cell adhesion molecule-like protein Dscam2

GO

GO:0016021   GO:0030017   GO:0003676   GO:0042802   GO:0007156   GO:0005887   GO:0005515   GO:0005622   GO:0005840   GO:0006412   GO:0033557   GO:0005839   GO:0051603   GO:0046835   GO:0006281   GO:0006259  

Length:

1369

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

26.54115

Exp number, first 60 AAs:

0.00179

Total prob of N-in:

0.00027

outside

1  -  1222

TMhelix

1223  -  1245

inside

1246  -  1369

 

 

Pi

266.470366

Theta

158.159017

Tajima's D

2.521221

CLR

0.33301

CSRT

0.944602769861507

Interpretation

Uncertain