Gene

KWMTBOMO16357

Annotation

ribosomal_protein_S11_isoform_1_[Bombyx_mori]

Location

Bomo_Chr28(+):6717554-6722641      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.268 Mitochondrial   Reliability : 1.905 Nuclear   Reliability : 1.533

CDS

ATGGCGGATCAGACGGAACGCTCATTCCAAAAACAACCTACAGTCTTTCTGAACCGCAAGAAAGGTATTGGTGTGAAGCGGAGCAGAAAACCGTTGAGATACCACAAGGATGTGGGCCTCGGTTTCAAGACTCCCCGTGAGGCGATTGAGGGTACCTACATTGACAAGAAGTGTCCCTTCACTGGCAACGTTTCGATCCGCGGCCGCATCCTCACCGGCGTCGTTCAGAAGATGAAGATGCAGAGAACTATCGTGATCCGCCGCGATTACCTTCACTACCTACCCAAATACAATAGGTTCGAGAAACGGCACAGGAACATGTCCGTACATTTGTCGCCTTGCTTCAGGGACGTGGAGATTGGTGATATTGTAACGATCGGCGAATGCAGACCTTTGTCCAAAACAGTTAGATTCAATGTTTTGAAAGTTTCAAAGGGCAAGGGCTCGAAGAAGTCTTTCAAAAAATTTTAA

Protein

MADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKVSKGKGSKKSFKKF

Similarity

Belongs to the universal ribosomal protein uS17 family.

Uniprot

Q5UAN3   D1LYP9   A0A2A4JWD0   E7DZ24   H9JW78   A0A212FIF7   + More
A0A2H1WZT8   A0A0V0G2Z9   R4G4F1   A0A1W4XHD0   A0A0L7KI72   A0A195BFY4   E2BUQ9   A0A158NBY2   E2A1V8   F4WHW9   A0A2A3EIY7   V9IIV1   A0A088A637   A0A1B6D1G5   A0A194QG42   A0A067R1D4   V5H199   A0A1B6LER8   A0A1B6GPY9   A0A1B6JFT5   A0A0C9Q6X0   Q4GXS7   Q66SW3   A0A0N7Z945   A0A3G1T1N3   E9J9H0   A0A023FAQ2   A0A0L7R1U1   E7DZ23   A0A343EU20   A0A1D1YEK5   A0A195FK25   S4NVN8   G0ZEE2   A2I420   Q5MGJ8   A0A026X3I2   A0A0K2CU27   Q95P67   K7J3W9   C6KI60   I4DM74   I4DIJ8   Q56FI3   A6YPG5   D1LYM5   A0A109NI10   A0A0P5SMI5   A0A2H8TLW2   A0A0M9A8U8   A0A1S4EAV4   D1M804   V5GXT4   C4WS14   A0A0P5N5G5   A0A0P5ULV1   A0A0P5UL75   A0A0P5E3D8   A0A0P5IKT5   A0A0N8ARF6   A0A0P5CRL4   A0A0P5CAS8   A0A0P5Y325   A0A2S2QBJ3   A0A0P5FTC0   A0A0P5AZ60   A0A0P4YLM6   E9GBH6   A0A0N7ZWL7   A0A1B6EAB7   A0A0P5AZ04   A0A0P5AHM3   A0A0P5XS16   A0A171B9V5   A0A0L8I641   A0A0P5W2U3   Q4GXS8   A0A069DPD9   A0A076L0Y8   A2IAD8   A0A1S3IEK6   E0W2J2   A0A1S3CZ68   A0A0A9WDK0   A0A224Z8R4   A0A131YSI9   A0A076KUI1   A0A183IGL6   H2ZXK8   J3JUY0   S4RV01   Q86G63   A0A131XPT7   A0A1W4X744  

Pubmed

19121390    22118469    26227816    20798317    21347285    21719571    + More
26354079    24845553    27129103    21282665    25474469    23622113    16023793    24508170    26263512    20075255    22651552    18207082    21292972    26334808    17437641    20566863    25401762    26823975    28797301    26830274    9215903    22516182    28049606   

EMBL

AY769325    AAV34867.1    GU084323    ACY95356.1    NWSH01000450    PCG76325.1    + More
HQ424727    ADT80671.1    BABH01025469    AGBW02008391    OWR53516.1    ODYU01012349    SOQ58620.1    GECL01003667    JAP02457.1    GAHY01000826    JAA76684.1    JTDY01009683    KOB63048.1    KQ976500    KYM83092.1    GL450743    EFN80564.1    ADTU01011477    GL435806    EFN72597.1    GL888170    EGI66198.1    EGI66199.1    KZ288229    PBC31687.1    JR047988    AEY60552.1    GEDC01017749    JAS19549.1    KQ459054    KPJ03920.1    KK852779    KDR16697.1    GALX01001853    JAB66613.1    GEBQ01017789    JAT22188.1    GECZ01005290    JAS64479.1    GECU01009667    JAS98039.1    GBYB01009853    JAG79620.1    AM048946    CAJ17183.1    AY706955    AY769326    AAU11818.1    AAV34868.1    GDKW01001571    JAI55024.1    MG992456    AXY94894.1    GL769313    EFZ10538.1    GBBI01000593    JAC18119.1    KQ414667    KOC64803.1    HQ424726    ADT80670.1    MF067293    ASM61891.1    GDJX01014853    JAT53083.1    KQ981491    KYN41020.1    GAIX01012877    JAA79683.1    JF265020    AEL28851.1    EF070523    ABM55589.1    AY829788    AAV91402.1    KK107036    EZA61959.1    KT218667    ALA09387.1    AF379640    AAK59928.1    PCG76326.1    AAZX01006133    GQ222274    ACS92720.1    AK402392    BAM19014.1    AK401116    BAM17738.1    AY961517    AAX62419.1    EF638976    ABR27861.1    GU084299    ACY95332.1    KC507308    AHB12431.1    GDIP01141362    JAL62352.1    GFXV01003136    MBW14941.1    KQ435719    KOX78826.1    GU120428    ACY71278.1    GALX01001854    JAB66612.1    ABLF02040572    AK340006    BAH70684.1    GDIQ01146847    JAL04879.1    GDIP01111164    JAL92550.1    GDIP01128813    JAL74901.1    GDIP01165655    JAJ57747.1    GDIQ01236716    JAK15009.1    GDIQ01250211    JAK01514.1    GDIP01167650    JAJ55752.1    GDIP01173798    JAJ49604.1    GDIP01063664    JAM40051.1    GGMS01005359    MBY74562.1    GDIQ01251713    JAK00012.1    GDIP01196356    JAJ27046.1    GDIP01227703    JAI95698.1    GL732538    EFX82959.1    GDIP01205401    JAJ18001.1    GEDC01002412    JAS34886.1    GDIP01192054    GDIP01192053    JAJ31348.1    GDIP01199056    JAJ24346.1    GDIP01069419    JAM34296.1    GEMB01000094    JAS03017.1    KQ416442    KOF96968.1    GDIP01092566    JAM11149.1    AM048945    CAJ17182.1    GBGD01003338    JAC85551.1    KF433792    AII98113.1    EF179452    ABM55458.1    DS235878    EEB19848.1    GBHO01040654    GBRD01001046    GDHC01000783    JAG02950.1    JAG64775.1    JAQ17846.1    GFPF01011804    MAA22950.1    GEDV01006999    JAP81558.1    KF433321    AII97645.1    UZAM01007389    VDO98813.1    AFYH01076246    AFYH01076247    BT127045    AEE62007.1    AY241966    AAO92287.1    GEFH01000209    JAP68372.1   

Proteomes

UP000218220    UP000005204    UP000007151    UP000192223    UP000037510    UP000078540    + More
UP000008237    UP000005205    UP000000311    UP000007755    UP000242457    UP000005203    UP000053268    UP000027135    UP000053825    UP000078541    UP000053097    UP000002358    UP000053105    UP000079169    UP000007819    UP000000305    UP000053454    UP000085678    UP000009046    UP000050793    UP000008672    UP000245300   

PRIDE

Q5UAN3    H9JW78    Q66SW3    Q86G63   

Pfam

PF00366   Ribosomal_S17        + More
PF16205   Ribosomal_S17_N

Interpro

IPR000266   Ribosomal_S17/S11        + More
IPR028333   Ribosomal_S17_arc-typ       
IPR032440   Ribosomal_S11_N       
IPR012340   NA-bd_OB-fold       
IPR019979   Ribosomal_S17_CS       

SUPFAM

SSF50249   SSF50249       

ProteinModelPortal

Q5UAN3   D1LYP9   A0A2A4JWD0   E7DZ24   H9JW78   A0A212FIF7   + More
A0A2H1WZT8   A0A0V0G2Z9   R4G4F1   A0A1W4XHD0   A0A0L7KI72   A0A195BFY4   E2BUQ9   A0A158NBY2   E2A1V8   F4WHW9   A0A2A3EIY7   V9IIV1   A0A088A637   A0A1B6D1G5   A0A194QG42   A0A067R1D4   V5H199   A0A1B6LER8   A0A1B6GPY9   A0A1B6JFT5   A0A0C9Q6X0   Q4GXS7   Q66SW3   A0A0N7Z945   A0A3G1T1N3   E9J9H0   A0A023FAQ2   A0A0L7R1U1   E7DZ23   A0A343EU20   A0A1D1YEK5   A0A195FK25   S4NVN8   G0ZEE2   A2I420   Q5MGJ8   A0A026X3I2   A0A0K2CU27   Q95P67   K7J3W9   C6KI60   I4DM74   I4DIJ8   Q56FI3   A6YPG5   D1LYM5   A0A109NI10   A0A0P5SMI5   A0A2H8TLW2   A0A0M9A8U8   A0A1S4EAV4   D1M804   V5GXT4   C4WS14   A0A0P5N5G5   A0A0P5ULV1   A0A0P5UL75   A0A0P5E3D8   A0A0P5IKT5   A0A0N8ARF6   A0A0P5CRL4   A0A0P5CAS8   A0A0P5Y325   A0A2S2QBJ3   A0A0P5FTC0   A0A0P5AZ60   A0A0P4YLM6   E9GBH6   A0A0N7ZWL7   A0A1B6EAB7   A0A0P5AZ04   A0A0P5AHM3   A0A0P5XS16   A0A171B9V5   A0A0L8I641   A0A0P5W2U3   Q4GXS8   A0A069DPD9   A0A076L0Y8   A2IAD8   A0A1S3IEK6   E0W2J2   A0A1S3CZ68   A0A0A9WDK0   A0A224Z8R4   A0A131YSI9   A0A076KUI1   A0A183IGL6   H2ZXK8   J3JUY0   S4RV01   Q86G63   A0A131XPT7   A0A1W4X744  

PDB

6MTE     E-value=5.63861e-58,     Score=562

KEGG

692653    K02949 small subunit ribosomal protein S11e | (RefSeq) RpS11, S11; ribosomal protein S11

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0005840   GO:0016021   GO:0022627   GO:0005622   GO:0033557   GO:0005839   GO:0051603   GO:0046835   GO:0006281   GO:0006259  

PANTHER

PTHR10744  

Length:

156

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000650000000000001

Exp number, first 60 AAs:

4e-05

Total prob of N-in:

0.36296

outside

1  -  156

 

 

Pi

279.294908

Theta

196.903808

Tajima's D

1.33791

CLR

0.000808

CSRT

0.747112644367782

Interpretation

Uncertain