SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16352
Pre Gene Modal
BGIBMGA013788
Annotation
putative_alcohol_dehydrogenase?_partial_[Operophtera_brumata]
Location
Bomo_Chr28(+):6473902-6489559      View in EpiBrowser
Location in the cell
PlasmaMembrane   Reliability : 1.782
 

Sequence

CDS
ATGGCCTCCCAAACCTGGACCCCGCCGGACATATCCGAAGTATGTCCCGATCAGATCGCGCCTCTGACCCAGTGCTCGCAAATCGGCTTCATGTACTTATCGTTGCTGGCTCAATTATTCGGGAATTCGTATGACCGACAAATATACAAAAACCCGTACAGGGATTACGGTGGGTCGCGGAGTTCGGATTACGCTCGGGGAATTCCATTAGGGCCGGTCGTGGATTCGGGTATCGATAAATCACACACGGCTGTGGGGCCGTTGCTGACAATGGACTTCTCCATCGATCACAACAGTGAGATACACAGTCGCGAACCCGAAGACAGTCACGCGTATTCGGGATCACCGTTCCACTCGAAGCCGGATGTATTCGATTTCCAAAAGCCGGATTTTAAATTTTCCTCCTTCGATTCGCCGGTTTTCGATTTTAATTACGTTTCCAAACGTTTCGCGGATGCCGAAGCAGCTGACAGCAAAGTGAGTGTTCGAGAAAAGAAAGTCACGAAGAAGGAGAACCGGAAGAAAAGAGAAGCAAGAGTAGAAGAATATGATTTTATTGTTGTCGGAGCTGGATCTGCGGGCTGTGTCGTCGCTAATCGTCTCTCTGAAGTCAAGAAGTGGAAGGTTTTGCTACTTGAAGCCGGTCCAGAAGAGCCAGACGTTACCAGCGTGCCAGGTTTTGCTCCAGCACTGGCTAGGTCAAACATCGACTGGAATTATCGAACTCAACCCGAGGAGTTGACGTGCAGAGCACAGCGAGGGCAAACTTGTGCTTGGTACAGTGGACGTGTTATGGGAGGGTCAAGTGCTATAAATTATCTTGTATATATGCGAGGTAATAAAAAAGATTACGACGATTGGGCCGCCTTAGGTAACTCAGGTTGGACCTATGAAGAGGTACTGCCTTACTTCAAGAAATCCGAAAACAACAAAGATATTGAAGCAATAGATAAAAAATATCACGGCGTCAACGGCCCTCTTAATGTTGAACGTTTTTCATACGTCGATGACAATGTCGTAATGTTAGTAAACGCATTCAATGAAACTGGTCTACCTTTGGTTGACTTCAATGGTCAGCAACAAATAGGTACAATGACAGCACAAACGACTTCAGCAAACGGGAAGAGAGTCTCAACGAATACTGCCTTCATAAAGCCAATAAGAAAGAAAAGAACCAATCTCACAGTACGTACTAACGCTCGGGTGACTAAAATTTTAATTGAACGCTACAAGAAAACGGCTAATGGAGTTAAATATATTAAAAACAACGTCTGGTATAAAGTATATGCAAGAAAAGAGGTGATACTAAGTGCTGGTGCACTGAATTCCCCTAAAATTCTAATGCTGTCTGGCATTGGACCGAAAGACGTATTAGAAGCATTAAATATATTTGTGATTAAAGATTTAAAAGTTGGTCACAATTTACAAGATCACGTAACCACCAATGCCATGTTAATGTCACTGACAAACAAAACTTCTACTATGATACCGGCTAACCAGATTATAGACCAGGTAAAAGAATATTATAAAACTAGAAATAGAAACCACCCACTTTCAGCTACTGGACCGTTACAGCTAACTGCTTTTATAAGAACTAAGTTTGCCGACAAAGACGAATCCTTACCAGACATTCAAGTACATTTCGACGGACGTAATTCTAAAGAGTTCTATTCAGATCCAACAAATTATTTAGAAACAAATGTATTACCATTCTCCTATTACGACAGTATAAACGTCAGACCAATACTGTTGGTGCCAGAAAGCAAAGGATATTTGACTTTGAATAAAACCCATCCTGTTTTCGGTCAACCTTTGATATATTCAAGGTTTTTCACCGTAAAAAAAGATATGGACACTTTAGTAGCGGCCTTAAAATCTATTACAGAATTGAAAAGAACCAAATCCTTTCGAGAAAAGGGCGTTAAATTTATAAGGAATACAGTCAGTGCGTGCAAACCATATAAATGGGGAAGTTATAAATATTTTGCGTGTTTATTTACAAGATATACCTCGACGATATTTCACCCATCGGGAACATGTAAAATGGGACCGAGTGATGATTTAGAAGCAGTTGTAAATCCTAAACTGGAAGTGTATGGTATTAAGCATTTAAGAGTGGCTGATGCTTCTATAATGCCGAGAATAGTTCGTGGAAATACAAATGCACCGGTTATAATGATCGGTGAAAAAATATCTGATCTAATTAAAGACAGATGGAAAGATTACGACATAGTCAGCATAATATTTAGACGTGTTTATATTACAAACAATCGCAATTGGGGTAAAACAATGGGTGGTTCCAGCGCATTGAACTATATGGTCTACATGAGAGGAAACAAAAGAGATTATGATGCATGGGCAGAACTAGGAAACCTTGGGTGGAGTTACCGGGAGGTCTTACCATATTTCAAGAAGTCAGAAAATAACCAAGATATCGAATCTCGGGATAAATATTTTCATTCCACTAGAGGGCCACTAAACGTTGAAAGATTCCCGTACATAGATATCAATACTATGATGCTGGTTGAAGCTTTCAAAGAAAAGGGTCTTCCAGTAACAGATTTTAATGCTGAAAACCAATTGGGAACTGATATAGCTCAATCTACATCTAAGGAGGGCCGTAGGATGTCTACAAACGTGGCTTTTATTAGACCCATACGTCACAAGCGGCCAAACTTGAATGTTGTCAGTGAAGCTTTTGTAACAAAAGTGTTGATTGATCCAATTAGCAAAACAGCTTTTGGGGTGCAATATTTCAAAAACGGCCTGTTATTCACGGTACATGCCAAAAAAGAAATTATTGTTAGTAGTGGTACTATAAATTCGCCTAAGTTACTAATGTTATCAGGAATCGGACCTAGATTTCATCTAGAAAGCCTAAATATTCCAGTTATTTCAGATTTAGACGTGGGTCATAACCTTCAAGATCATGTAACAACAGACGCTCTGGTGCTAGCTTTATCTAACAAAACGTCTACGATGGTTAACGGACGGCAACTTGTTAATGAAATATACGACTATTACTCACAACATCCAAGGAAAAATGGTCCATTAGCAGCCACTGGGACCCTGAGCGGAACAGCTTTTATAAAAACCCAATTTTCATATGACCAAGCACCAGATATTCAATTTCATTTTGACGGTCGAAACTTTAAAGAGTTTTATTCTGATCCTACGACATATTTAGCAACGAATATATTCCCTCTATCATTTTACGACAGCTTGTCAGCTAGGCCGCTGTTACTAACCCCAAAAAGCAGAGGGTACATACTTTTAAATCAAACAGATCCGGTATTTGGACCACCTTTGATTTATTCCAAATTCTTTACGATCAGAGAAGATTTAGATGTCCTAATAGCTGGTTTAAGATTCGCTGTAAGCTTAGAAAATACAGAAGCATTCAAAATCAGCGGTGCAAGCTATGTAAAAATACCTGTACAAGCGTGCTCTGGGTTTGACTGGGGCTCAGATGAATATTTTATTTGTCTATTAACGCATTACACTTCAACTATATTCCATCCAGTCGGTACGTGTAAGATGGGTCCTAAATGGGATAGAGAAGCAGTTGTTGATCCGAGATTAAAAGTATACGGTATAAGAAATTTAAGAGTCGTTGATGCTTCGATTATGCCATTGATTGTTAGAGGTAATACAAATGCACCAACTATCATGATAGCTGAAAAAGCATGCGATATGATAAAGGAAGAATGGTTGACGTAA
Protein
MASQTWTPPDISEVCPDQIAPLTQCSQIGFMYLSLLAQLFGNSYDRQIYKNPYRDYGGSRSSDYARGIPLGPVVDSGIDKSHTAVGPLLTMDFSIDHNSEIHSREPEDSHAYSGSPFHSKPDVFDFQKPDFKFSSFDSPVFDFNYVSKRFADAEAADSKVSVREKKVTKKENRKKREARVEEYDFIVVGAGSAGCVVANRLSEVKKWKVLLLEAGPEEPDVTSVPGFAPALARSNIDWNYRTQPEELTCRAQRGQTCAWYSGRVMGGSSAINYLVYMRGNKKDYDDWAALGNSGWTYEEVLPYFKKSENNKDIEAIDKKYHGVNGPLNVERFSYVDDNVVMLVNAFNETGLPLVDFNGQQQIGTMTAQTTSANGKRVSTNTAFIKPIRKKRTNLTVRTNARVTKILIERYKKTANGVKYIKNNVWYKVYARKEVILSAGALNSPKILMLSGIGPKDVLEALNIFVIKDLKVGHNLQDHVTTNAMLMSLTNKTSTMIPANQIIDQVKEYYKTRNRNHPLSATGPLQLTAFIRTKFADKDESLPDIQVHFDGRNSKEFYSDPTNYLETNVLPFSYYDSINVRPILLVPESKGYLTLNKTHPVFGQPLIYSRFFTVKKDMDTLVAALKSITELKRTKSFREKGVKFIRNTVSACKPYKWGSYKYFACLFTRYTSTIFHPSGTCKMGPSDDLEAVVNPKLEVYGIKHLRVADASIMPRIVRGNTNAPVIMIGEKISDLIKDRWKDYDIVSIIFRRVYITNNRNWGKTMGGSSALNYMVYMRGNKRDYDAWAELGNLGWSYREVLPYFKKSENNQDIESRDKYFHSTRGPLNVERFPYIDINTMMLVEAFKEKGLPVTDFNAENQLGTDIAQSTSKEGRRMSTNVAFIRPIRHKRPNLNVVSEAFVTKVLIDPISKTAFGVQYFKNGLLFTVHAKKEIIVSSGTINSPKLLMLSGIGPRFHLESLNIPVISDLDVGHNLQDHVTTDALVLALSNKTSTMVNGRQLVNEIYDYYSQHPRKNGPLAATGTLSGTAFIKTQFSYDQAPDIQFHFDGRNFKEFYSDPTTYLATNIFPLSFYDSLSARPLLLTPKSRGYILLNQTDPVFGPPLIYSKFFTIREDLDVLIAGLRFAVSLENTEAFKISGASYVKIPVQACSGFDWGSDEYFICLLTHYTSTIFHPVGTCKMGPKWDREAVVDPRLKVYGIRNLRVVDASIMPLIVRGNTNAPTIMIAEKACDMIKEEWLT

Summary

Similarity
Belongs to the GMC oxidoreductase family.
Uniprot
A0A0L7LJQ0   A0A182QFX0   A0A182LAR7   A0A182MEM3   A0A182JP92   A0A182VXW4   + More
Pubmed
26227816    20966253   
EMBL
JTDY01000873    KOB75594.1    AXCN02000040    AXCM01001593   
Proteomes
UP000037510    UP000075886    UP000075882    UP000075883    UP000075881    UP000075920    + More
Pfam
PF05199   GMC_oxred_C        + More
PF00732   GMC_oxred_N
Interpro
IPR027424   Glucose_Oxidase_domain_2        + More
IPR036188   FAD/NAD-bd_sf       
IPR007867   GMC_OxRtase_C       
IPR000172   GMC_OxRdtase_N       
SUPFAM
SSF51905   SSF51905       
Gene 3D
3.50.50.60     4.10.450.10    
ProteinModelPortal
A0A0L7LJQ0   A0A182QFX0   A0A182LAR7   A0A182MEM3   A0A182JP92   A0A182VXW4   + More
PDB
5NCC     E-value=1.72856e-50,     Score=508

Ontologies

KEGG
101739772    no KO assigned | (RefSeq) glucose dehydrogenase [FAD, quinone]-like
GO
GO:0050660   GO:0016614   GO:0016491   GO:0016055   GO:0033557   GO:0005839   GO:0051603   GO:0046835   GO:0006281   GO:0006259   GO:0055114  

Topology

Length:
1239
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.28062
Exp number, first 60 AAs:
0.13556
Total prob of N-in:
0.00529
outside
1  -  1239
 
 

Population Genetic Test Statistics

Pi
255.380756
Theta
194.655168
Tajima's D
0.735052
CLR
0.730243
CSRT
0.587320633968302
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号