Gene

KWMTBOMO16351

Pre Gene Modal

BGIBMGA008832

Annotation

Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]

Location

Bomo_Chr28(-):6411329-6414651      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from transposon TNT 1-94      

Location in the cell

Nuclear   Reliability : 3.782

CDS

ATGTCGGTCGGCACGAGTTCGTCAATTCAACATGCCGCCATTGAAAAACTGCGTGGTGCAGAAAACTACTCCACGTGGAAGTTCTCCATGCGGATGTTATTAATCCATGAAGAGTTATGGGATTCCGTCATGGATAAATCGGAATTGACGGAAGCCATGAAGAAAAAGAGCGAAAAGGCATTGGCACGTATTGCATTGTCGGTGCAGCCAGCGGTCATCCCGTGCATCCGCACCGCCACCAGCGCACACGAGGCGTGGAATAACCTAAGTAAGGCATACGAAGGGCGCGGCTTGTGCAGGAGGCTTGGCATACTGAGAAGTCTCTTCGGTGTCAAGTTATCGGATAGCAGTTCCATGGAAGCCTACATCAATAAAATTAAAGAGTTGGCGTATCAACTGAGTGAAATGGAATCCGCATTGGATGATGAGTTTATTGCCGTTATAATGCTAAGTGGGCTCACAGAAGATTTTGACCCCCTCATTATAGCAATTGAGAACTCAAATGTAAAACTCACCACGGAACTTGTCTCAGGAAAACTCATAGCAGAAAACCAGAGGCGTAAGGAGAAACAAGAAGTCACTGCGTTGGTAATCAAGAAGCAACCGAGATGCTTCAAGTGCAAAAATGTGGGTCACATTTCTAAGAATTGTACCAACGAAGGAAGCTTCAAGGAGCCAGCGGACGTAGGAGGCAACAAGGGCCAAAATAAATCCAGGTATCAGGCGAGGAGCAATCCGAAGCAGAATATCCCAAAGGACAAAGCGCTCGTTGCAGCTCTGTCTGTAAAAATAAGCAGTGATGTGTGGTGCATTGACTCAGGTGCTACTAATCATATGTGCAATGATAAAAGGTACATGATTGACTTCCGACCTAATAGTGTGGATGTGAGCATCGCGAATGGTGAAATGCTACGAACAGGTGGCATTGGACATGTAAGAGTTCATATGAAAGACTGTATAAGGACAATAAGTGATGTGTATTATGTTCCTAATCTTAGTACTAACTTATTGTCAGTAAGTGCCATGACAAAGAAAGGGTATACTGTTCAATTTAATAATAAATTATGTAGGGTCTATGACAAACATGAATGTCTAGTAACAGGTACACAGATAAATGGTGTCTATCAGCTGGATACTGTGTCAGACAACGGCTGTGTCGTCGCTTCGACTGTGGTGGCATCGGCAAAGACTCACACTGCTAATGCGGCAACGATGTTATCTCAGGAGGTATGGCACAGAAGACTCGGACACCTAAACTTGAGGAGTATGCAATTGCTACAAAAAGGTATGGCTGGTGGCATTTCATATAGTTTGTCTGATTTTAAACAGTGTATTCCTTGTATAGAAAGTAAACAAAGTAGACTCCCTTTTCCCAAAAAGTCACACACTAGAGCTAAGGAAAAATTAGGTCTTGTACATAGTGACCTTTGTGGTCCCCTTCAGGTCCCTTCATTCAGTGGTGCCAGGTATTTTCTAAGTTTCATTGATGACTTCTCCAGGAAGCAATATGTTTATTTTTTAAAATATAAAAATGAAACTTTTGGGTATTTCCAACAATTCAAAGCTCTGGCTGAGAAAGAAACGGGAAAGAAATTAAAAATACTTAGGACTGATAGGGGCGGTGAGTATATGAGTCATGAGTTTCAGGAATTTCTCAAGAAGAATGGCATCCAACACCAGAAAACTATTGCGGATAGTCCGCAACAGAATGGTGTTGCTGAACGGGCCAATAGGACCGTCATAGAGAAGGCACGGAGTATGCTGCGGGATGCTAGCCTGGGAATGAAATTTTGGGCTGAGGCTGTGAACACTGCCGTATACCTTAAGAACCGGAGTCCAACAAAAGCTGTCATAGGAGCTACTCCGGAGGAAAAATGGTCAAACAAAAAGGTAAATCTGCATCATTTAAGAATTTTTGGATGCATTGCATATGCAATGATAAGGAAAAGAAAGAAATTAGAATCAAAAAGTAAACCATATATATTTGTAGGCTACAGTGAGGAGTCAAAAGGCTATAGACTCATAGACCCACATGATCCCACTAATTGTGTCTTTGCTCGTGACATAGTTTTTGTTGAAACAAAATTCTACGACAAAGAAAGTGTGTCACATGATGAAAATTCAGACCAACACATGTTTGTTAACATGAGTTTAAATACAGTTGGTCCGAATGAGCTACCCACTGTGAGTTCTGATGTTTCTGATGACACAATATTATCACAGAGCGGACACAGAAAACAGAGGCATAGCGCAATCACATTGGACGATTCTGATAGCGGAGAAACGGATTATGATACAAATGACTGCTTGGATGAAACTTATATTCCAGGGGACGATTCATTGGTTGAAGCAGAGGAGACAGATGATTCATATGAAGATTTGCCAGATTCTCCGCTGAGGGCAAGCTTCGTGAGATTAGTCGACAACCCTGATGATCCCCAGACTGCAGCCGAGGCCTTAAACGGGCCTGAATCGGACAGTTGGAGAAAGGCAATGACAGATGAGTATAATTCCTTTGTTAAGAACAAGTGTTGGACCCTGACTGAGCATGAACCCAGCCGCAAACCAGTCAAATGTAAATGGATTTTTAAAAGAAAATATGGAGCAGATGGAGAGTTACTAAAGTATAAAGCTCGTTTAGTTGCCAAGGGTTACACACAGAAGTACGGTGTTGATTATCAAGAGACTTTTTCACCAGTGGTAAGGTACTCCACAATTAGGATTTTACTTGCTTTAGCAGCTGAACATGGCCTGTCCATTGAGCACCTGGATGTCAAAACGGCGTTCCTTAATGGCGACCTCGAGGAAACTGTATACATGGAGCAGCCAGAGTTCTTTGAAGAAAAAGGAAAAGAGAACATGGTGTACAGGCTAAATAAAGCTGTGTACGGCTTAAAACAGGCATCCAAGACATGCTGA

Protein

MSVGTSSSIQHAAIEKLRGAENYSTWKFSMRMLLIHEELWDSVMDKSELTEAMKKKSEKALARIALSVQPAVIPCIRTATSAHEAWNNLSKAYEGRGLCRRLGILRSLFGVKLSDSSSMEAYINKIKELAYQLSEMESALDDEFIAVIMLSGLTEDFDPLIIAIENSNVKLTTELVSGKLIAENQRRKEKQEVTALVIKKQPRCFKCKNVGHISKNCTNEGSFKEPADVGGNKGQNKSRYQARSNPKQNIPKDKALVAALSVKISSDVWCIDSGATNHMCNDKRYMIDFRPNSVDVSIANGEMLRTGGIGHVRVHMKDCIRTISDVYYVPNLSTNLLSVSAMTKKGYTVQFNNKLCRVYDKHECLVTGTQINGVYQLDTVSDNGCVVASTVVASAKTHTANAATMLSQEVWHRRLGHLNLRSMQLLQKGMAGGISYSLSDFKQCIPCIESKQSRLPFPKKSHTRAKEKLGLVHSDLCGPLQVPSFSGARYFLSFIDDFSRKQYVYFLKYKNETFGYFQQFKALAEKETGKKLKILRTDRGGEYMSHEFQEFLKKNGIQHQKTIADSPQQNGVAERANRTVIEKARSMLRDASLGMKFWAEAVNTAVYLKNRSPTKAVIGATPEEKWSNKKVNLHHLRIFGCIAYAMIRKRKKLESKSKPYIFVGYSEESKGYRLIDPHDPTNCVFARDIVFVETKFYDKESVSHDENSDQHMFVNMSLNTVGPNELPTVSSDVSDDTILSQSGHRKQRHSAITLDDSDSGETDYDTNDCLDETYIPGDDSLVEAEETDDSYEDLPDSPLRASFVRLVDNPDDPQTAAEALNGPESDSWRKAMTDEYNSFVKNKCWTLTEHEPSRKPVKCKWIFKRKYGADGELLKYKARLVAKGYTQKYGVDYQETFSPVVRYSTIRILLALAAEHGLSIEHLDVKTAFLNGDLEETVYMEQPEFFEEKGKENMVYRLNKAVYGLKQASKTC

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Similarity

Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.

Keywords

Aspartyl protease   Complete proteome   Endonuclease   Hydrolase   Metal-binding   Nuclease   Nucleotidyltransferase   Protease   Reference proteome   RNA-directed DNA polymerase   Transferase   Transposable element   Zinc   Zinc-finger  

Feature

chain  Retrovirus-related Pol polyprotein from transposon TNT 1-94

Uniprot

A0A0N1ICY1   A0A0V0TUP0   A0A0V0T3I0   A0A0V1APS7   A0A0V1FKH2   A0A0V1K1Y9   + More
A0A0V1F2E6   A0A0J7NHJ8   A0A2J7R8S8   A0A2J7RKJ6   A0A2J7Q1Z2   A0A2J7R668   A0A0A9WQD4   A0A2A4JRI1   A0A0N1IFR1   A0A085MVP5   A0A2A4J959   A0A194RJV9   A0A085N572   A0A0K8U6S2   A0A0V0Z6Q0   A0A1X7U495   A0A034VP70   A0A0A9YFM0   B6V6Z8   A0A0A1XLZ7   A0A0A1WXQ3   A0A1Y1N668   A0A1B6E9D0   A0A251TCA0   A0A251T2S6   W8BWJ0   A0A251TN47   A0A0J7K7B7   A0A1Y1LYU4   A0A0K8U956   A0A0V0YNF4   A0A194RU38   A0A1Y1N932   A0A0A9WPH5   A0A0J7K9H9   A0A2J7PSB2   A0A251UIF2   A0A0K8UDK8   W8AEF0   A0A182GZN1   A0A0A9WRE3   A0A0K8W4G0   A0A0A9Z683   W8AL23   A0A2N9J6C2   A0A146LFV8   P10978   A0A392LYY6   A0A151R6U8   A0A0J7K6W1   Q6L3N8   A0A0J7KG03   A0A151RAK8   A0A2P5W031   A0A1W7R6H7   A0A0V1APU2   A0A2P5YYC3   A0A251T6N3   A0A224XA26   A0A0P6IU13   A0A131XNF9   A0A0J7K2Y4   A0A0V0WR33   A0A1Y3EBW8   W8BEX4   A0A293MM55   T1PKV2   A0A251SFG3   A0A2Z6M4B6   A0A2K3MZ63   A0A2Z6N0M9   A0A251SKN6   A0A2P6P744   A0A034W7T5   A0A2Z6P3P6   A0A0A9XNJ4   A0A0A9XIP2   A0A0A9XD75   A0A0A9XFC8   A0A0P6JS54   A0A392LYK8   A0A392M193   A0A151T0X4   A0A0L9TUK8   Q9LH44   A0A0A1WFC7   A0A151THM1   A0A1Y1LWI3   A0A0V1NJN8   A0A0K8U8C3   Q9AU17  

Pubmed

26354079    25401762    24929829    25348373    25830018    28004739    + More
28538728    24495485    26483478    26823975    2536143    29922311    22057054    26999592    24500806    28382043    26460024    10907853    16040666   

EMBL

KQ460882    KPJ11482.1    JYDJ01000136    KRX42725.1    JYDJ01000808    KRX33413.1    + More
JYDH01000330    KRY26802.1    JYDT01000069    KRY86576.1    JYDS01000009    JYDV01000021    KRZ33483.1    KRZ41218.1    JYDR01000001    KRY80095.1    LBMM01004924    KMQ91985.1    NEVH01006721    PNF37230.1    NEVH01002725    PNF41351.1    NEVH01019375    PNF22597.1    NEVH01006980    PNF36330.1    GBHO01036544    JAG07060.1    NWSH01000816    PCG74073.1    KQ460208    KPJ16606.1    KL367628    KFD61291.1    NWSH01002292    PCG68657.1    PCG68658.1    KQ460297    KPJ16236.1    KL367553    KFD64618.1    GDHF01030254    JAI22060.1    JYDQ01000379    KRY07987.1    GAKP01015352    JAC43600.1    GBHO01011746    GBHO01011744    GBHO01011742    JAG31858.1    JAG31860.1    JAG31862.1    FJ238509    ACI62137.1    GBXI01002679    JAD11613.1    GBXI01011094    JAD03198.1    GEZM01011856    JAV93393.1    GEDC01002834    JAS34464.1    CM007900    OTG08534.1    CM007901    OTG04806.1    GAMC01008929    JAB97626.1    CM007899    OTG12557.1    LBMM01012669    KMQ86061.1    GEZM01045163    GEZM01045162    JAV77888.1    GDHF01029191    JAI23123.1    JYDU01000001    KRY01876.1    KQ459875    KPJ19636.1    GEZM01011857    JAV93390.1    GBHO01033237    JAG10367.1    LBMM01011374    KMQ86881.1    NEVH01021933    PNF19227.1    CM007895    OTG22666.1    GDHF01027648    JAI24666.1    GAMC01019995    JAB86560.1    JXUM01099923    KQ564528    KXJ72133.1    GBHO01033235    JAG10369.1    GDHF01006360    JAI45954.1    GBHO01003630    JAG39974.1    GAMC01019998    JAB86557.1    OIVN01006429    SPD32977.1    GDHC01012180    JAQ06449.1    X13777    LXQA010000742    MCH80155.1    KQ484038    KYP38095.1    LBMM01012645    KMQ86082.1    AC149291    AAT38758.1    LBMM01008124    KMQ89126.1    KQ483889    KYP39674.1    KZ669858    PPR84446.1    GEHC01000879    JAV46766.1    KRY26801.1    KZ662693    PPS20553.1    OTG06758.1    GFTR01008662    JAW07764.1    GDUN01000695    JAN95224.1    GEFH01000951    JAP67630.1    LBMM01015747    KMQ84682.1    JYDK01000071    KRX78146.1    LVZM01021469    OUC41357.1    GAMC01011082    JAB95473.1    GFWV01017285    MAA42013.1    KA648745    AFP63374.1    CM007903    OTF97594.1    DF973341    GAU26746.1    ASHM01014140    PNX96091.1    DF973299    GAU24969.1    OTF99426.1    PDCK01000045    PRQ17740.1    GAKP01008575    JAC50377.1    DF974949    GAU51028.1    GBHO01024949    JAG18655.1    GBHO01024951    JAG18653.1    GBHO01024947    JAG18657.1    GBHO01024950    JAG18654.1    GDUN01000696    JAN95223.1    LXQA010000257    MCH79654.1    LXQA010000987    MCH80374.1    CM003611    KYP60712.1    CM003372    KOM33859.1    AP002064    BAB01972.1    GBXI01017107    JAC97184.1    CM003608    KYP66486.1    JAV77889.1    JYDM01000185    KRZ84108.1    GDHF01029405    JAI22909.1    AF279585    AAK29467.1   

Proteomes

UP000053240    UP000055048    UP000054776    UP000054995    UP000054805    UP000054826    + More
UP000054632    UP000036403    UP000235965    UP000218220    UP000054783    UP000007879    UP000215914    UP000054815    UP000069940    UP000249989    UP000084051    UP000075243    UP000239757    UP000054673    UP000243006    UP000236291    UP000238479    UP000053144    UP000054924   

Pfam

PF13976   gag_pre-integrs        + More
PF00665   rve
PF13961   DUF4219
PF07727   RVT_2
PF00098   zf-CCHC
PF00069   Pkinase
PF08263   LRRNT_2
PF01582   TIR
PF00931   NB-ARC
PF00248   Aldo_ket_red
PF08370   PDR_assoc
PF00005   ABC_tran
PF01061   ABC2_membrane

Interpro

IPR036875   Znf_CCHC_sf        + More
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR013103   RVT_2       
IPR001584   Integrase_cat-core       
IPR039537   Retrotran_Ty1/copia-like       
IPR025314   DUF4219       
IPR025724   GAG-pre-integrase_dom       
IPR036397   RNaseH_sf       
IPR009056   Cyt_c-like_dom       
IPR011009   Kinase-like_dom_sf       
IPR000719   Prot_kinase_dom       
IPR013210   LRR_N_plant-typ       
IPR017441   Protein_kinase_ATP_BS       
IPR032675   LRR_dom_sf       
IPR008271   Ser/Thr_kinase_AS       
IPR000157   TIR_dom       
IPR036390   WH_DNA-bd_sf       
IPR002182   NB-ARC       
IPR035897   Toll_tir_struct_dom_sf       
IPR027417   P-loop_NTPase       
IPR036812   NADP_OxRdtase_dom_sf       
IPR023210   NADP_OxRdtase_dom       
IPR003439   ABC_transporter-like       
IPR013525   ABC_2_trans       
IPR013581   PDR_assoc       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF56112   SSF56112       
SSF46785   SSF46785       
SSF52200   SSF52200       
SSF52540   SSF52540       
SSF51430   SSF51430       

Gene 3D

3.30.420.10     3.80.10.10     3.40.50.10140     3.20.20.100    

CDD

cd06660  Aldo_ket_red

ProteinModelPortal

A0A0N1ICY1   A0A0V0TUP0   A0A0V0T3I0   A0A0V1APS7   A0A0V1FKH2   A0A0V1K1Y9   + More
A0A0V1F2E6   A0A0J7NHJ8   A0A2J7R8S8   A0A2J7RKJ6   A0A2J7Q1Z2   A0A2J7R668   A0A0A9WQD4   A0A2A4JRI1   A0A0N1IFR1   A0A085MVP5   A0A2A4J959   A0A194RJV9   A0A085N572   A0A0K8U6S2   A0A0V0Z6Q0   A0A1X7U495   A0A034VP70   A0A0A9YFM0   B6V6Z8   A0A0A1XLZ7   A0A0A1WXQ3   A0A1Y1N668   A0A1B6E9D0   A0A251TCA0   A0A251T2S6   W8BWJ0   A0A251TN47   A0A0J7K7B7   A0A1Y1LYU4   A0A0K8U956   A0A0V0YNF4   A0A194RU38   A0A1Y1N932   A0A0A9WPH5   A0A0J7K9H9   A0A2J7PSB2   A0A251UIF2   A0A0K8UDK8   W8AEF0   A0A182GZN1   A0A0A9WRE3   A0A0K8W4G0   A0A0A9Z683   W8AL23   A0A2N9J6C2   A0A146LFV8   P10978   A0A392LYY6   A0A151R6U8   A0A0J7K6W1   Q6L3N8   A0A0J7KG03   A0A151RAK8   A0A2P5W031   A0A1W7R6H7   A0A0V1APU2   A0A2P5YYC3   A0A251T6N3   A0A224XA26   A0A0P6IU13   A0A131XNF9   A0A0J7K2Y4   A0A0V0WR33   A0A1Y3EBW8   W8BEX4   A0A293MM55   T1PKV2   A0A251SFG3   A0A2Z6M4B6   A0A2K3MZ63   A0A2Z6N0M9   A0A251SKN6   A0A2P6P744   A0A034W7T5   A0A2Z6P3P6   A0A0A9XNJ4   A0A0A9XIP2   A0A0A9XD75   A0A0A9XFC8   A0A0P6JS54   A0A392LYK8   A0A392M193   A0A151T0X4   A0A0L9TUK8   Q9LH44   A0A0A1WFC7   A0A151THM1   A0A1Y1LWI3   A0A0V1NJN8   A0A0K8U8C3   Q9AU17  

KEGG

NA   

GO

GO:0000943   GO:0015074   GO:0008270   GO:0003676   GO:0020037   GO:0009055   GO:0003964   GO:0004190   GO:0004519   GO:0004491   GO:0004674   GO:0005524   GO:0016021   GO:0007165   GO:0043531   GO:0016887   GO:0016055   GO:0033557   GO:0005839   GO:0051603   GO:0046835   GO:0006281   GO:0006259  

PANTHER

PTHR11439  

Length:

972

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01491

Exp number, first 60 AAs:

0.0003

Total prob of N-in:

0.00064

outside

1  -  972

 

 

Pi

336.328048

Theta

153.240037

Tajima's D

1.137559

CLR

0.24307

CSRT

0.696865156742163

Interpretation

Uncertain