Silkworm Genome Informatics Database

Gene

KWMTBOMO16341

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC106708942_[Papilio_machaon]

Location

Bomo_Chr28(-):5726339-5733372 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.135 Nuclear Reliability : 1.138

CDS

ATGCTATTGTGGGTCTTCGCTGATAAAATAATAGGAGGGTACCTCCCGCTCAGCGGGAGGAGAATCCCTCCGTGTGGCCGACTCGTCGGACGCACGCTGCCCGCGTACTCTGGGGGGGGCAAAAACTGCCTAGACGTCAGGTCCGGGAAGGACGGAGTTCAAAAGAAGAAAATTATGTCCGAGAAGGACCCTGAAGTAAGCTCCTTAAGAGCCGATGTCGTGTCGGACAACGATATGGCCACAGTTGGTTCGGCCCAGTCGTCGACCCATTCGTCGCCGACACGACGACGACGGAAAAGGGTGCTCAATATAAGCTCGGACGGGCTGAGTAGCAGCTCCGGCTCGGAGGCTCAGGATCCGACACGTGTGAAGCCCAGAGCAGTCACGCCGTCAAAGCGTGGACGGGGACGCCCTGCGACCACAGGGCAGTACGTTGGCATGGCCGCTGCCAGGCAAGCGTACCTCAAGGCACAAAAAGAGGAGAAGGAGCTCACTGAGAGCGCGCGCACCACACGCCACAAGAGGAGAGCGGCTGAAGGGTCAGTCCCTAAGCCCGATGCCGAGCGTAGGCTCCATCAAAGTGCAGAGGTGGCCCTGATGGTCGCCGCCAAATCCAGCAGCCCGAAGGGCACGTACGTGCGTGCACTGAAGGAGTTGGCAGTCACTGTCAAGGAGGCCACGGAGGACCTTGTGGGCTACACCGCAGCCGAAGAGGCTAAGAGACTGCGAGCGGTCAACGTCAAGCAGGAGCAGGAGATCCTGCAACTGCGTAAGGAGCTCGATGAAGTTAGAAGGGAGTTGGCGAGGGTTTCGCAGGTGCTAGCGTTGCCCACATCGACTGCGACCCCGGCCCCGAACACCAAGGAGGAAGAGGAGGAGTTGCGCCTACAGCGCATTATGCGAGCTGTCGGCACTATGCTCGACGCTCGCTTTGAAGGGCTGGAGGCACGGCTTCTACCGGAGCCCCGAATGCGACCACCGCTAGCGGCGGACAAGCAGAGGAGCCGGGAAAAATCGTCTAATCCCCCTGTCGTCGTTGACGCTGCACCGGATGCGGCACCGTCATCAGTGCCACCGATGACATTGGCGAAAAAGAGGATGCGTGGCCCCAAGAGAAGTGTCACCGCGCAAGCGGCTTCATCCGAAACGCACACCTTCCTCCCGGCTCCAGCTTCCATGATCGAGAGCTGGTCAACGGTCACCCGTAGGGGTGCTCGACCGAGGGAGGAAGCAGTGAGGACGCTTCCAGCGGCAGCTATCGCTGAAGCGGAAAGGAAAGACCGGTCTTCTGTAAAGAGGAAAGAGAAGAAGCTGCGCCCTCCACGCACTCAGGCCGTTGTCCTCAAGCTGCAACCAGAGGCCGTGGAAAGAGGACTCACGTACCGCACTGTACTCGCCGAAGCGAGGGCCAAGGTAGATCCTGGGGCACTTGGAATACCCATCCAGCGCATCCGGTCTGCAGTGACTGGGTCTAAGGTGCTGGTAGTGGAAGGTGCAGACCAGAGCGCCAAGGCCGATCTCCTGGCCCAAAAGCTTCGTGAGGTTCTGCCCGCAGAAGGGGTCATAGTGACCAGGCCAGTAACGACCGCAGCCATCCGCATCAGCGGACTGGACGACTCCCTGATGCCGGAGGAACTTACCGCGGAGCTTGCCCGGATTGGCGAATGCGCTCCTGATGCGATGAAGATCGGAGACATCAAGTATGGCCCAGGCGGGATGGGTCAAGTATTGGTCCGGTTGCCCGTCGTTGCCACGATGAAGGTTCTCGCCGTTCCAAAACTGAGGGTTGGTTGGAGCGTGCTCCGCGCTTGTTTGTTAGAGGCTAAGAAGCTACAGTGCTTCCGATGCCATGAGCTAGGGCACGTGAGCGCCCGATGTCCTTCGTCGGTCGACCGCAGCCGGGATTGTTATCGGTGCGGCCAGACCGGCCACGTAGCGGCCGGCTGCTCTCTTGCACCACACTGCGCTGGGAATCTCAACCATTGCGCCAGAGCTCAGGACCTTTTGTTCCAGAGCATGGCGGAGGGGTTGACCCATCTTGCGGTGGTCGCCGAGCCGTATCGGGTCCCTTCGAGCCCCGATTGGGCGGCCGATTTGGAGGGCCGAGTGGCAATCATCCGGCGTTGTTGTGTGGGTGCTCCGCCTACGTTTGCCGTTGTTGAAAGAGGTCGCGGCTTCGTTGCCGTCCTCTGGGCCGAGATATTCGTGTTGGGAGTGTACTTTTCCCCAAACAGGACGCTCGCCGAGTTTGAGGTTTTCCTCAGCGAGCTCAGCCGCGTCGTTGGAAGGTCGCACTTCCGACGGATTCTCGTTCTGGGTGACCTAAATGCAAAGTCATTGTCTTGGGGTTCCTCTAGGACGTGCCCCAGAGGTAGAGCGGTGGAGGAGTGGCTGGTCGGAAGCGGTCTCCTCATCCTCAATCGCGGTACGGAACTCACATGCGTGCGACGTTTGGGCGGGTCCGTGGTGGACGTTACATTCGCCACGCCTGACGTCGCATATCGCGTACGCGGTTGGGCGGTGATGGTTGGCGAGGAGACCCTCTCCGACCACCGTTACATCCGATTCAGTGTCGCCGCGACCCCGGTGGGTTCTGTTCGGGGCTTTTCCTTGCCCATCAGTGGCAGCGCTAGGGGTCCTCGTTGGGCCCAGAAGCGCCTCAACATCGAGCGGTTGCGTGAGGCGGCCATAGTGCAGGCGTGGCGTCTTGACTCGCTTGGCGAGCCAGCAGACGTGTGCGAGGGGGTGGAGCGTCTGCGCGAGGCAATGTCACGGGTGTGTGACGCTGCTATGCCTCGCGTGAGAGCTCTCGCTCCTAAGCGCCAAGTTCATTGGTGGACCGAGGAGATCGCTAGCCAGCGCCGGCTATGCGATATTAGTCGTCGCACATACCAGCGATATCGACGACGAAGAACGCGCCGGGACCCCGACGAGGAGGACCGCCTGTACGAAGTGTACAGGACGGCGATAAGAACCCTGCGCTTGGCTATCGGGGAGGCGAAGGAGGCCGCCTGGAACGACCTACTGGCCTCGCTGGACCGTGACCCGTGGGGCGGCCCTACAGGCTGGCGCCGGGTAGTCGGGGGTCTGTTTCCCGATTTATCCGGGACGGCCTTCGTCCCCCCTGTGATGACAATGGCGCGGATTGCTGATAGCGAAGAGCTTGAGGACGTCTCCCAGGTGGAGTTCGATTTGGCTGTGCAGAGGATGCGGGCTAAGCGCACGGCACCCGGTCCCGATGGGATCTCGTCCCAAGCGTGGGCGCTCGCCTTGACAGGTGACGGCTTGGGGCCTGCCCTCCAAGGGCTATTCAGCAGGTGCCTCCGTGAGGGCAGGTTCCCAGAGCCATGGAAGACTGGTCGGCTTGTCCTTATTCCTAAGGAAGGCCGGCCACGTGACGAGCCAAGCGGGTACCGCCCAATCGTCGTGCTGGACGAGGCTGGTAAGCTCCTCGAGCGCATCGTCGCCAGTCGCCTCGTCCAGCACCTCGAAAGCGTTGGGCCTGACCTGGCTCCTAACCAATATGGTTTCCGGAGAGGTCGCTCCACCATGGACGCGGTCTTGCGCGTCCGCCACCTCTCCGATCGTGCGTGCTCCGAGGGGGGCGTGTTGTTGGCTGTGTCGATTGATATCGCCAACGCCTTCAACACGATCCCTTGGAGCACGATCGTGGAATCGCTCCGGTTTCACCGCGTCCCCCCTAGTCTCCGCACCCTGATAGAGGATTACCTCTCAGGGCGAAATGTGGTCTTCCCCGAGAGGAGAGGGTGGGGACGGAAAGCGGTGTCGTGCGGGGTCCCGCAGGGGTCGGTACTGGGACCACTCCTGTGGGACATCGGTTTCGACTGGGTCCTGCGCGGTGCTAGCCTGCGTGGCGTCGACGTAGTGTGCTATGCCGACGACACGCTGGTGACGGCCCGCGGAGCCGACTACAGAGCCGCAGCGATCCTTGCGACGGCGGCGGTCTCCACCGTCGTTAGTCGCATTCGGAGATTAGGTCTTGAGGTGGCCCTCCGCAAGTCCGAAGCGGTGTGCTTTCACCCAGTCCGGAGGGGACCTCCTCCGGGAGCGAATCTCATAGTCGGCGGAGTATCGATCGCTGTCCAGCCGAAGCTCAAATATTTGGGCCTTGTGCTGGACAGTCGATGGCGCTTCGACCACCACTTTGGTGAGTTAGTCCCGAAGCTGCTGGGGATGGCGGGCGCACTAGCCCGTCTTCTCCCCAACGTCGGTGGTTGCAGCGCCGGCGTCCGGCGTCTGTACCTGGGGGTCGTGCGCAGTATGGCTTTGTACGGCGCTCCCGTGTGGTCGCCCGCACTCTCTGCGCGCAATGCAGCTTTGCTGCTACGAGCGCAGCGGGTGCTCGCGGTGAGAGTCATCAGGGGGTACCGTACGATCTCCCGGGAGGTCGCCTGCGCCCTCGACGGTTCCCTTCCTTGGGATCTCGAGGCTGAGGTAGCAGCTGCGGTATACCGGCGTAGAACACAGTCCCTGAGTCGGGGACGGACGCCCGGCCCGTCGGCTGTCGGTCGGTGGAGGCGTGCTGCGCGTCATCTGGCGTACGCCAAGTGGAGGGAGCGGTTGCTGGAGGAGCTTGGCCAAACTTCAGTCACTCGCCGACGCACCCTCGAGGCCCTGGTGCCCGTGCTGGAGGCATGGTCAGATAGACGACACGGCGTGCTCTCCTTCCACTTAACGCAGGTCCTCTCGGGCATGGCTGCTTCGGGAGAGGAGATCAGCAGTTATACAGTCGGCATTCTCGTCACCCCAGGAATCAATTTAAGACAAGACCCTGAACGTATCAATCAATCAGGTGTAATGATAATATCAGTAGAGTTCCGCGGTTGA

Protein

MLLWVFADKIIGGYLPLSGRRIPPCGRLVGRTLPAYSGGGKNCLDVRSGKDGVQKKKIMSEKDPEVSSLRADVVSDNDMATVGSAQSSTHSSPTRRRRKRVLNISSDGLSSSSGSEAQDPTRVKPRAVTPSKRGRGRPATTGQYVGMAAARQAYLKAQKEEKELTESARTTRHKRRAAEGSVPKPDAERRLHQSAEVALMVAAKSSSPKGTYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQEILQLRKELDEVRRELARVSQVLALPTSTATPAPNTKEEEEELRLQRIMRAVGTMLDARFEGLEARLLPEPRMRPPLAADKQRSREKSSNPPVVVDAAPDAAPSSVPPMTLAKKRMRGPKRSVTAQAASSETHTFLPAPASMIESWSTVTRRGARPREEAVRTLPAAAIAEAERKDRSSVKRKEKKLRPPRTQAVVLKLQPEAVERGLTYRTVLAEARAKVDPGALGIPIQRIRSAVTGSKVLVVEGADQSAKADLLAQKLREVLPAEGVIVTRPVTTAAIRISGLDDSLMPEELTAELARIGECAPDAMKIGDIKYGPGGMGQVLVRLPVVATMKVLAVPKLRVGWSVLRACLLEAKKLQCFRCHELGHVSARCPSSVDRSRDCYRCGQTGHVAAGCSLAPHCAGNLNHCARAQDLLFQSMAEGLTHLAVVAEPYRVPSSPDWAADLEGRVAIIRRCCVGAPPTFAVVERGRGFVAVLWAEIFVLGVYFSPNRTLAEFEVFLSELSRVVGRSHFRRILVLGDLNAKSLSWGSSRTCPRGRAVEEWLVGSGLLILNRGTELTCVRRLGGSVVDVTFATPDVAYRVRGWAVMVGEETLSDHRYIRFSVAATPVGSVRGFSLPISGSARGPRWAQKRLNIERLREAAIVQAWRLDSLGEPADVCEGVERLREAMSRVCDAAMPRVRALAPKRQVHWWTEEIASQRRLCDISRRTYQRYRRRRTRRDPDEEDRLYEVYRTAIRTLRLAIGEAKEAAWNDLLASLDRDPWGGPTGWRRVVGGLFPDLSGTAFVPPVMTMARIADSEELEDVSQVEFDLAVQRMRAKRTAPGPDGISSQAWALALTGDGLGPALQGLFSRCLREGRFPEPWKTGRLVLIPKEGRPRDEPSGYRPIVVLDEAGKLLERIVASRLVQHLESVGPDLAPNQYGFRRGRSTMDAVLRVRHLSDRACSEGGVLLAVSIDIANAFNTIPWSTIVESLRFHRVPPSLRTLIEDYLSGRNVVFPERRGWGRKAVSCGVPQGSVLGPLLWDIGFDWVLRGASLRGVDVVCYADDTLVTARGADYRAAAILATAAVSTVVSRIRRLGLEVALRKSEAVCFHPVRRGPPPGANLIVGGVSIAVQPKLKYLGLVLDSRWRFDHHFGELVPKLLGMAGALARLLPNVGGCSAGVRRLYLGVVRSMALYGAPVWSPALSARNAALLLRAQRVLAVRVIRGYRTISREVACALDGSLPWDLEAEVAAAVYRRRTQSLSRGRTPGPSAVGRWRRAARHLAYAKWRERLLEELGQTSVTRRRTLEALVPVLEAWSDRRHGVLSFHLTQVLSGMAASGEEISSYTVGILVTPGINLRQDPERINQSGVMIISVEFRG

Uniprot

A0A0J7KQK3 A0A0J7NFZ0 A0A0J7KRB8 A0A0J7KIS5 J9KM84 X1WJY4 + More
X1WZ64 A0A139WAH4 A0A139WN93 A0A139WNC9 J9KNS1 X1WXT5 J9KWM9

Pubmed

18362917 19820115

EMBL

LBMM01004272 KMQ92618.1 LBMM01005474 KMQ91485.1 LBMM01003988 KMQ92922.1 + More
LBMM01006977 KMQ90149.1 ABLF02018942 ABLF02041885 ABLF02011238 ABLF02011183 ABLF02041884 KQ971388 KYB24913.1 KQ971310 KYB29499.1 KYB29500.1 ABLF02018808 ABLF02004854 ABLF02041317 ABLF02011927

Proteomes

UP000036403 UP000007819 UP000007266

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00098   zf-CCHC

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom

SUPFAM

SSF56219 SSF56219 + More
SSF57756 SSF57756

Gene 3D

3.60.10.10

ProteinModelPortal

A0A0J7KQK3 A0A0J7NFZ0 A0A0J7KRB8 A0A0J7KIS5 J9KM84 X1WJY4 + More
X1WZ64 A0A139WAH4 A0A139WN93 A0A139WNC9 J9KNS1 X1WXT5 J9KWM9

PDB

1WDU E-value=7.27099e-08, Score=142

KEGG

105842185 no KO assigned | (RefSeq) uncharacterized LOC105842185

GO

GO:0008270 GO:0003676 GO:0003964 GO:0005515 GO:0033557 GO:0005839 GO:0051603 GO:0046835 GO:0006281 GO:0006259

Length:

1615

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0925699999999999

Exp number, first 60 AAs:

0.00563

Total prob of N-in:

0.00032

outside

1 - 1615

Pi

1.873802

Theta

111.130655

Tajima's D

0

CLR

1.372777

CSRT

0.370181490925454

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree