Silkworm Genome Informatics Database

Gene

KWMTBOMO16337

Pre Gene Modal

BGIBMGA013759

Annotation

PREDICTED:_structure-specific_endonuclease_subunit_SLX4_[Amyelois_transitella]

Location

Bomo_Chr28(-):5628816-5635118 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.598

CDS

ATGTGTGATAGTAGTAATAATAGCACTAAAGACAAGAATGTGATAAGTAAATATTTCACGAGAGCAGCAGATGAGAGTCTTGAAGATTTTAAAGAAACTAAGAGAATCATTACCTGCCCTAAAATTATAAAGCCTGCCAGGAAACAGAGAAATAATGGAAAAAGAATCTGCAAGCAGAAAGACATAAGGACTTCTTTAAAAAGAAAGAATAATGAGTTAATTGAGTTTAGTAAAGAATTTAATAATGTTTGCGAGAAGACAGGTATTGATGTAGATTCAGAACAGTTGCAGTTGGCAGTAGCTTTATCAAAGTCTCTTCAAGCTGAATCTTCAGATGTAAATCCACAGAATTTTCGAAATTCCCAAGAAAGAACTAAAAAAATACATGCAACATTACAGGAATATGGTTTTGTTGTACCAGAAATTAAAATAACAACATCAAAAAAAATCAGGAAAAATAGAAAACAGTATAAACTGATTTCTCTTTCAGATATAGAGAAACAACAAAACATATCTGAGAAATATTCTTGTGTATTATTAGAAGATATTGACCGTATAGATCACAAAATAGAATCTAATATTAGTAATAGTCATTTATATAATCTAGCAACTAATGTTTCATATGAACATATAAAGGATAATGGTATATTTTATGTAGAAAACTTATTAGAAAAATCTACAAGTGCATTTAATTTATTAAGAGACTGGACTGAAATACCAGGGAGGCCAGTTAGCCCCAGAATTGCCAATAATTTTATCAGCTTTAGTGATATAGATTGCAGTCAGAGTGAATTAGACGATTTATTAAGTGGTACATTCAAAAGACGAACTGAAATCATGGTTTTTAAAACAAACAATGCTCCAAAATATTCAGGAGATGAAGAGAAAAGGAGTAACAATAAACCAGAAGATAATATTGTTATAGAAAGTGTAACTCGACACAGATGTTATTCGCCAGACATATTTGATGATGAATCTTTGTTAATGGATAATAGTCGACATGCTCAACTTATATCACAAGAGAAACATATTAGTATGGATTTAACAGAATGCTTGAATCATGTATCTCAAATTACATCGAAAAGCGCAATCATGGAAAATAAAAATATAACTAGAAGGAGGTCCGATGATTTTATGGACATGACTGAATGTGTGTCAAGTTCAAAAACTGTTGTAAGTAAAATTGATTTAACTGTTGACCATATTAATATCATATTAGAAGAAAACCACACAGAAGATGATTTAGAAAAGCCTAGTATGCCAAGAAATAGTAAAAATAATCTGGATATTGATGTTATAGATGTTGATGAATATACTAGAACTCTGTCCAATAAAAGGTTTGAAACAAAAGAAGTATTAGATCTCACACAAGACAAAGTAATTTCTGCTAAAAGAGAAAGTTTATTTGATGATTTTATTCATGATCATGACAGCAAAGAAAATGTGACTATTGAAGTGCCTTTTCAATATTCAGAAGCAAGTAACAATATTGAAAGTCGAAATTTAGATAATGGTAATGAAGAAATCGATCTAACTCAGAGCCCTGAATTGCTAAATGATACTGATGATATAGATTTAAAAAAAGCAAAAAACAATACTGAACATGAAAATTATTCAAAAAATCATACTTTAAATGATTCTATAGAAAACGAAAATGCAGAGGTATTTAAAGAAATTGTAAAAGATTGTGAAGAAGAAATCGATTTAACACAATCCTCAAATTCACCCAATGGCTCTGACAGGGAATCTCCAAATCTATGTTTGAGTGCACTTGGTAAAATGGACAATATTTCTATAGATTATGATGAAATTCAAAGTGGAAAACATACAGTTTATTCATCAAATGAAAATTCCTCAAAAATAGACCCTATTGAAATTCAGGATGTTGAACTTAGTCAAAAGTCTGAAATATTTGAAATACATGACAATGAATTGGATTATTCATTGAATAAATCTAGATTTGAGAATTCTGATAAAGCCAAACTAACATATCTAGATAAAAAAGTTCAAAATCAAGAATCATTTGAAAGTGAAACAGCCGATAAGCAGAAAGATGATGTGGAATTTAATGATAATGAATATACTTCTGCAATTAATTTACAAAATGAAGTATTGAGTTCAAATAGCGTAACTCCTTCAAGAGAAAAAAATATTTTTAGAACAGAAACACCAAAAAATAATGATTTCATAATAAAATTGGACGAAGTAACTCCGATGCAAGATTATGCATCAATGACCAGTCCAGAGAGAAACAGGGAATTAAATAAGTACGGATTAAAACCCTTGAAGAGGAAAAGAGCCGTACAACTCTTGACCCATCTCTACAACCAAACTCATCCTTTGGTCGAAGAGATGCCAGTTGACGTAATAGCATCACCATCGAAAAAACGCAAGAGAAATAGCCCGAAAGCAATAAGAAGTGCCAAGAAGGATTCTCCCATCAAGCACAATGTGAATATAGAGGATTGCTATGAAGTTACGAATGAAACGCCCGTGATAAGAGAAGTGGAATGTCACTCCGACGATTGGATGTTTCAAAAAAAGGAAAGAGCAAAGGTGCACTCATGCAGACTCCCTCTGCACATAGCATTCCACAACTACGTGTCGTGTCGTAACGGACTTCGGGAGGCGATTCTGAAATACGACCCGGTCAATATAGATGTTATTCACAAAGAATTAGCCGGCTACGGTCACAGATATGATCCCAAGGATCTTCTCAAGTTTCTGGATAAGAGATGTATAACAGTGAAGACGAGTGATAACGCCAAGAGTTCAAGACACTAA

Protein

MCDSSNNSTKDKNVISKYFTRAADESLEDFKETKRIITCPKIIKPARKQRNNGKRICKQKDIRTSLKRKNNELIEFSKEFNNVCEKTGIDVDSEQLQLAVALSKSLQAESSDVNPQNFRNSQERTKKIHATLQEYGFVVPEIKITTSKKIRKNRKQYKLISLSDIEKQQNISEKYSCVLLEDIDRIDHKIESNISNSHLYNLATNVSYEHIKDNGIFYVENLLEKSTSAFNLLRDWTEIPGRPVSPRIANNFISFSDIDCSQSELDDLLSGTFKRRTEIMVFKTNNAPKYSGDEEKRSNNKPEDNIVIESVTRHRCYSPDIFDDESLLMDNSRHAQLISQEKHISMDLTECLNHVSQITSKSAIMENKNITRRRSDDFMDMTECVSSSKTVVSKIDLTVDHINIILEENHTEDDLEKPSMPRNSKNNLDIDVIDVDEYTRTLSNKRFETKEVLDLTQDKVISAKRESLFDDFIHDHDSKENVTIEVPFQYSEASNNIESRNLDNGNEEIDLTQSPELLNDTDDIDLKKAKNNTEHENYSKNHTLNDSIENENAEVFKEIVKDCEEEIDLTQSSNSPNGSDRESPNLCLSALGKMDNISIDYDEIQSGKHTVYSSNENSSKIDPIEIQDVELSQKSEIFEIHDNELDYSLNKSRFENSDKAKLTYLDKKVQNQESFESETADKQKDDVEFNDNEYTSAINLQNEVLSSNSVTPSREKNIFRTETPKNNDFIIKLDEVTPMQDYASMTSPERNRELNKYGLKPLKRKRAVQLLTHLYNQTHPLVEEMPVDVIASPSKKRKRNSPKAIRSAKKDSPIKHNVNIEDCYEVTNETPVIREVECHSDDWMFQKKERAKVHSCRLPLHIAFHNYVSCRNGLREAILKYDPVNIDVIHKELAGYGHRYDPKDLLKFLDKRCITVKTSDNAKSSRH

Uniprot

H9JW46 A0A194Q2V0 A0A2A4J541 A0A2H1WTN1 A0A0L7LH62

Pubmed

19121390 26354079 26227816

EMBL

BABH01025369 KQ459588 KPI97735.1 NWSH01002936 PCG67257.1 ODYU01010975 + More
SOQ56425.1 JTDY01001160 KOB74704.1

Proteomes

UP000005204 UP000053268 UP000218220 UP000037510

PRIDE

H9JW46

Pfam

PF09494 Slx4

Interpro

IPR018574 Structure-sp_endonuc_su_Slx4

ProteinModelPortal

H9JW46 A0A194Q2V0 A0A2A4J541 A0A2H1WTN1 A0A0L7LH62

KEGG

101739212 no KO assigned | (RefSeq) structure-specific endonuclease subunit SLX4

GO

GO:0033557 GO:0016021 GO:0006260 GO:0006281 GO:0017108 GO:0005634 GO:0005839 GO:0051603 GO:0046835 GO:0006259

Length:

927

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00035

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00007

outside

1 - 927

Pi

170.96235

Theta

147.668931

Tajima's D

0.575505

CLR

18.51632

CSRT

0.537173141342933

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics