Gene

KWMTBOMO16324

Pre Gene Modal

BGIBMGA013780

Annotation

PREDICTED:_ELKS/Rab6-interacting/CAST_family_member_1-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr28(+):5395949-5403558      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.451

CDS

ATGAAGATAATAGATCTAGAGATAGAACTGAACGAATCGTCTCTAATACTCTCGGAAGTATTGAAAATATCCGATAGCCAGGAGCTAACGAATATAAAGAGGAGCAAAAGCTTTTTCGAATTGCAAAAGAGCGGTAAGGTAGTGGATAGGTTAGATAAAGGGAAGTTCAGTAGGAGTGACAATGCATTAGACGCTATTTATTACGGTAAGAATGCAAAAAACGAATCTCCCAACATAAGTAAGCTAATGAGGAAAGTCACTAATTTAACTAAAGAGATAGCCATGAAGAATTCCAAAATAATCGAACAGCAGAGATGCATATCTATATTAGAAGAAGCGTTAAGAGAAAATAATAATATAGCTGAATTCGAGCAACTGCTGGCCGTGGTCAGGAGTAAGGACGAGAGGATTAATGAATTAGAACAGTTCGTCAATGAAAACTGTGGGACCCAAACGACCGGTAGCAAAGACAATAGGATATTAGAACTTGAAGAGGCTCTGAAGGAATCCTTTATGGTGGCGGCGGAGAGAGAAAAAGTATTTTATAACGAAGAACAGCGACGAATCGAGACTATAAACAAGATGAAGAAAATGGAGCAGAGGATACTGTCGTTACAAAACGCTTCGGCGCTGAGTTGTGAGACGTGCAGTTCCGTGTTGAAGCGGATGAAGCGTCTAGAAGATTCTTTGGAGGATTGTCAGAAGAAAAGGGATAATGCATTAAGACAGTTGGCACATGTAATCCAAGAGATCCTGGAGGCAACGATCAGCGAAAAGGACTCTCATATAGCAGAACTTGAGATGAAAGGGGTGCTGGACGAGAACGAGACGAAGCTATACGACTCGCTGAAGAGTGAAAGGGACAGGCTGCTCAATCGACTTAAGATAGAGAATGAAAGGATCGTTGATATTGAACGCGACCTGTACCAGGCGATCATGAGAGCTGAGGAGTGCGGGTCCGTACCGGTCGGCCTCACGCTGGCAGACGACCTCATAGGCATCGACGAAGACAATGTAATTGTCTGGGGAGAGGACATCCCGGGAACGTTACTGTGA

Protein

MKIIDLEIELNESSLILSEVLKISDSQELTNIKRSKSFFELQKSGKVVDRLDKGKFSRSDNALDAIYYGKNAKNESPNISKLMRKVTNLTKEIAMKNSKIIEQQRCISILEEALRENNNIAEFEQLLAVVRSKDERINELEQFVNENCGTQTTGSKDNRILELEEALKESFMVAAEREKVFYNEEQRRIETINKMKKMEQRILSLQNASALSCETCSSVLKRMKRLEDSLEDCQKKRDNALRQLAHVIQEILEATISEKDSHIAELEMKGVLDENETKLYDSLKSERDRLLNRLKIENERIVDIERDLYQAIMRAEECGSVPVGLTLADDLIGIDEDNVIVWGEDIPGTLL

Uniprot

H9JW67   A0A2A4K8V6   A0A2A4K7Z1   A0A2W1BNX2   A0A0N1PH35   A0A3S2NIB2   + More
A0A2H1VHZ3   A0A1E1WSR6   A0A0L7LJT5   A0A212EHJ7   A0A2J7QLG3   A0A2J7QLH1   A0A2J7QLH9   A0A0T6B3K4   U3JMZ8   R0LR13   E1BQR7   A0A1U7RUZ7   A0A3Q2UM15   A0A1V4K821   A0A1V4K7Z0   A0A1V4K803   A0A2K5V8B2   A0A151NIG3   A0A093KH44   A0A2K5V8M3   G7PJJ8   A0A2Y9TA02   A0A2Y9T1M0   A0A2K5V8K6   A0A341ADU6   A0A341AFY0   A0A340YAP1   A0A2Y9T5F9   A0A2Y9NTX0   A0A2Y9NFS8   A0A341AGT0   A0A2Y9NIY1   A0A2U4AKF2   A0A2U4AKF9  

Pubmed

19121390    28756777    26354079    26227816    22118469    15592404    + More
22293439    22002653   

EMBL

BABH01025348    NWSH01000040    PCG80358.1    PCG80357.1    KZ150109    PZC73373.1    + More
KQ459166    KPJ03569.1    RSAL01000029    RVE51758.1    ODYU01002488    SOQ40032.1    GDQN01000971    JAT90083.1    JTDY01000841    KOB75697.1    AGBW02014875    OWR40954.1    NEVH01013245    PNF29430.1    PNF29431.1    PNF29432.1    LJIG01015990    KRT81944.1    AGTO01001284    AGTO01011404    AGTO01021523    KB742468    EOB08164.1    AADN05000523    LSYS01004200    OPJ80578.1    OPJ80580.1    OPJ80579.1    AQIA01009648    AQIA01009649    AQIA01009650    AQIA01009651    AQIA01009652    AQIA01009653    AQIA01009654    AQIA01009655    AQIA01009656    AQIA01009657    AKHW03002956    KYO36601.1    KK586117    KFV97135.1    CM001286    EHH65983.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000283053    UP000037510    UP000007151    + More
UP000235965    UP000016665    UP000000539    UP000189705    UP000190648    UP000233100    UP000050525    UP000009130    UP000248484    UP000252040    UP000265300    UP000248483    UP000245320   

PRIDE

H9JW67   

Pfam

PF10174   Cast        + More
PF09457   RBD-FIP

Interpro

IPR019323   ELKS/CAST        + More
IPR019018   Rab-bd_FIP-RBD       
IPR037245   FIP-RBD_C_sf       

SUPFAM

SSF144270   SSF144270       

ProteinModelPortal

H9JW67   A0A2A4K8V6   A0A2A4K7Z1   A0A2W1BNX2   A0A0N1PH35   A0A3S2NIB2   + More
A0A2H1VHZ3   A0A1E1WSR6   A0A0L7LJT5   A0A212EHJ7   A0A2J7QLG3   A0A2J7QLH1   A0A2J7QLH9   A0A0T6B3K4   U3JMZ8   R0LR13   E1BQR7   A0A1U7RUZ7   A0A3Q2UM15   A0A1V4K821   A0A1V4K7Z0   A0A1V4K803   A0A2K5V8B2   A0A151NIG3   A0A093KH44   A0A2K5V8M3   G7PJJ8   A0A2Y9TA02   A0A2Y9T1M0   A0A2K5V8K6   A0A341ADU6   A0A341AFY0   A0A340YAP1   A0A2Y9T5F9   A0A2Y9NTX0   A0A2Y9NFS8   A0A341AGT0   A0A2Y9NIY1   A0A2U4AKF2   A0A2U4AKF9  

KEGG

101738921    no KO assigned | (RefSeq) ELKS/Rab6-interacting/CAST family member 1-like

GO

GO:0005813   GO:0008385   GO:0036064   GO:0007252  

Length:

351

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00038

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00467

outside

1  -  351

 

 

Pi

318.760556

Theta

180.816781

Tajima's D

2.231147

CLR

0.157247

CSRT

0.916554172291385

Interpretation

Uncertain