Gene

KWMTBOMO16321  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013765

Annotation

putative_28S_ribosomal_protein_S16?_mitochondrial_[Papilio_xuthus]

Location

Bomo_Chr28(-):5335670-5337468      View in EpiBrowser

Full name

Probable 28S ribosomal protein S16, mitochondrial      

Location in the cell

Mitochondrial   Reliability : 3.622

CDS

ATGTCCCTACCTCCGGCTAGTGGAACCGGCAGATATTTTGCTAAAGCAGCGAAGTCTATTCGCCTAATACGCCAAGGTTGCACAAATCGACCATTCTTTCACATTTCTGTAACCCATAGGAGACGTTTAAACAGTCAGCCAGTAATAGAGCAGCTAGGTTCATACGATCCAATGCCGAACATCAATAATGAAAAGCTAGTTGCTTTGAATTTGGAACGACTTAAGTATTGGCTTGGGAAGGGTGCTCACGTATCGACCCCAGTTTCAGAACTTCTTGGACTCTCAGGATTTTTCCCCATACATCCTCGAACCTACATGACTGCCTGGAGAAATAGACAACAAGAAAGGGAGAACCTAGCCAAACAAGAAGCAGAAAATGCCAAAGAACAAACTGCTGCAACATAA

Protein

MSLPPASGTGRYFAKAAKSIRLIRQGCTNRPFFHISVTHRRRLNSQPVIEQLGSYDPMPNINNEKLVALNLERLKYWLGKGAHVSTPVSELLGLSGFFPIHPRTYMTAWRNRQQERENLAKQEAENAKEQTAAT

Subunit

Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins.

Similarity

Belongs to the bacterial ribosomal protein bS16 family.

Keywords

Complete proteome   Mitochondrion   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  Probable 28S ribosomal protein S16, mitochondrial

Uniprot

H9JW52   A0A2H1VKV8   A0A3S2PHQ4   A0A2W1BI40   A0A0N1IN59   A0A2A4K9F9   + More
S4PWR2   A0A0N1IA13   A0A212EHJ5   B3MCZ0   D6WQ75   B0WR13   A0A182J3N5   A0A182WCS0   A0A182MVZ7   A0A084VUA2   A0A0M4EWY7   A0A182SDU5   B3NRC1   A0A1A9WWL1   A0A1Q3FBW2   W8AQQ4   A0A182JVN6   A0A182YPH4   Q9V6Y3   A0A182VF26   A0A0K8UNX8   A0A182XCP9   A0A1A9ZCA2   A0A1L8EIY5   A0A1L8EIS7   A0A034WVJ4   A0A1A9YE54   A0A1B0BC05   A0A182NNH5   A0A1B0G5B8   A0A182U7J6   A0A182LI27   Q7Q2U5   A0A182HXN4   A0A1I8QDS0   B4MPR4   A0A1A9VM88   A0A2M3ZCH3   A0A2M4AZJ9   A0A0K8TSX7   A0A1W4VCI8   A0A182R0P0   B4P6N1   Q16VD4   A0A182FE19   A0A023EG50   A0A182PNW9   A0A2M4CPG6   A0A1W4WMV1   T1E7D4   A0A1A9UDU0   A0A0L0CM16   B4J7L8   A0A1I8M761   W5JK45   Q28XH8   B4GG54   A0A3B0J624   B4KRC8   U5EKM8   J3JTT9   B4QFD7   B4HR20   A0A0T6AYU8   B4LLE7   N6UL32   A0A1L8DRI3   A0A1B0CI82   C4WV81   E2BB59   A0A2S2P0P3   A0A310S3V7   A0A1L8E069   A0A2P8XUX8   A0A2R7WBL1   A0A026W9X2   A0A1B6G811   E2AAF2   A0A067QQJ1   A0A195EXH4   A0A154P154   E0VH53   A0A1B6CJJ8   A0A0N7Z8N3   A0A1B6L2C1   A0A1S3CVN1   A0A0V0GBB0   F4WAX3   A0A158NSN1   A0A0N0BKY5   A0A151WGL7   A0A195DUT8   A0A151I627   A0A195CBA9  

Pubmed

19121390    28756777    26354079    23622113    22118469    17994087    + More
18362917    19820115    24438588    24495485    25244985    10731132    12537572    12537569    25348373    20966253    12364791    14747013    17210077    26369729    17550304    17510324    24945155    26108605    25315136    20920257    23761445    15632085    22516182    22936249    23537049    20798317    29403074    24508170    30249741    24845553    20566863    27129103    21719571    21347285   

EMBL

BABH01025346    ODYU01003104    SOQ41436.1    RSAL01000029    RVE51757.1    KZ150109    + More
PZC73374.1    KQ459166    KQ458738    KPJ03573.1    KPJ05332.1    NWSH01000040    PCG80360.1    GAIX01006343    JAA86217.1    KQ459992    KPJ18583.1    AGBW02014875    AGBW02010634    OWR40955.1    OWR48137.1    CH902619    EDV36305.1    KQ971354    EFA06934.1    DS232049    EDS33111.1    AXCM01002808    ATLV01016711    KE525103    KFB41546.1    CP012524    ALC42712.1    CH954179    EDV56073.1    GFDL01009974    JAV25071.1    GAMC01019732    JAB86823.1    AE013599    AY119210    GDHF01024249    JAI28065.1    GFDG01000246    JAV18553.1    GFDG01000245    JAV18554.1    GAKP01001160    GAKP01001159    JAC57793.1    JXJN01011751    CCAG010011641    AAAB01008968    EAA13246.3    APCN01005322    CH963849    EDW74103.1    GGFM01005505    MBW26256.1    GGFK01012895    MBW46216.1    GDAI01000568    JAI17035.1    AXCN02001910    CM000158    EDW90983.1    CH477597    EAT38498.1    GAPW01005757    JAC07841.1    GGFL01003054    MBW67232.1    GAMD01003142    JAA98448.1    JRES01000204    KNC33287.1    CH916367    EDW02166.1    ADMH02001288    ETN63149.1    CM000071    EAL26338.2    CH479183    EDW35474.1    OUUW01000001    SPP75353.1    CH933808    EDW09344.1    GANO01001744    JAB58127.1    BT126648    AEE61611.1    CM000362    CM002911    EDX07047.1    KMY93698.1    CH480816    EDW47817.1    LJIG01022471    KRT80400.1    CH940648    EDW61899.1    APGK01019274    KB740098    KB632331    ENN81396.1    ERL92631.1    GFDF01005100    JAV08984.1    AJWK01013083    ABLF02025434    AK341400    BAH71801.1    GL446923    EFN87066.1    GGMR01010420    MBY23039.1    KQ815368    OAD46931.1    GFDF01001941    JAV12143.1    PYGN01001306    PSN35817.1    KK854581    PTY17082.1    KK107309    QOIP01000011    EZA52897.1    RLU16388.1    GECZ01024134    GECZ01011205    JAS45635.1    JAS58564.1    GL438113    EFN69587.1    KK853041    KDR12174.1    KQ981948    KYN32602.1    KQ434796    KZC05669.1    DS235161    EEB12709.1    GEDC01025250    GEDC01023708    JAS12048.1    JAS13590.1    GDKW01002867    JAI53728.1    GEBQ01022104    JAT17873.1    GECL01000976    JAP05148.1    GL888054    EGI68663.1    ADTU01025065    KQ435689    KOX81198.1    KQ983161    KYQ46986.1    KQ980322    KYN16611.1    KQ976400    KYM92662.1    KQ978023    KYM97985.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000218220    UP000053240    UP000007151    + More
UP000007801    UP000007266    UP000002320    UP000075880    UP000075920    UP000075883    UP000030765    UP000092553    UP000075901    UP000008711    UP000091820    UP000075881    UP000076408    UP000000803    UP000075903    UP000076407    UP000092445    UP000092443    UP000092460    UP000075884    UP000092444    UP000075902    UP000075882    UP000007062    UP000075840    UP000095300    UP000007798    UP000078200    UP000192221    UP000075886    UP000002282    UP000008820    UP000069272    UP000075885    UP000192223    UP000037069    UP000001070    UP000095301    UP000000673    UP000001819    UP000008744    UP000268350    UP000009192    UP000000304    UP000001292    UP000008792    UP000019118    UP000030742    UP000092461    UP000007819    UP000008237    UP000245037    UP000053097    UP000279307    UP000000311    UP000027135    UP000078541    UP000076502    UP000009046    UP000079169    UP000007755    UP000005205    UP000053105    UP000075809    UP000078492    UP000078540    UP000078542   

PRIDE

H9JW52    Q9V6Y3   

Pfam

PF00886   Ribosomal_S16

Interpro

IPR000307   Ribosomal_S16        + More
IPR023803   Ribosomal_S16_dom_sf       

SUPFAM

SSF54565   SSF54565       

Gene 3D

3.30.1320.10    

ProteinModelPortal

H9JW52   A0A2H1VKV8   A0A3S2PHQ4   A0A2W1BI40   A0A0N1IN59   A0A2A4K9F9   + More
S4PWR2   A0A0N1IA13   A0A212EHJ5   B3MCZ0   D6WQ75   B0WR13   A0A182J3N5   A0A182WCS0   A0A182MVZ7   A0A084VUA2   A0A0M4EWY7   A0A182SDU5   B3NRC1   A0A1A9WWL1   A0A1Q3FBW2   W8AQQ4   A0A182JVN6   A0A182YPH4   Q9V6Y3   A0A182VF26   A0A0K8UNX8   A0A182XCP9   A0A1A9ZCA2   A0A1L8EIY5   A0A1L8EIS7   A0A034WVJ4   A0A1A9YE54   A0A1B0BC05   A0A182NNH5   A0A1B0G5B8   A0A182U7J6   A0A182LI27   Q7Q2U5   A0A182HXN4   A0A1I8QDS0   B4MPR4   A0A1A9VM88   A0A2M3ZCH3   A0A2M4AZJ9   A0A0K8TSX7   A0A1W4VCI8   A0A182R0P0   B4P6N1   Q16VD4   A0A182FE19   A0A023EG50   A0A182PNW9   A0A2M4CPG6   A0A1W4WMV1   T1E7D4   A0A1A9UDU0   A0A0L0CM16   B4J7L8   A0A1I8M761   W5JK45   Q28XH8   B4GG54   A0A3B0J624   B4KRC8   U5EKM8   J3JTT9   B4QFD7   B4HR20   A0A0T6AYU8   B4LLE7   N6UL32   A0A1L8DRI3   A0A1B0CI82   C4WV81   E2BB59   A0A2S2P0P3   A0A310S3V7   A0A1L8E069   A0A2P8XUX8   A0A2R7WBL1   A0A026W9X2   A0A1B6G811   E2AAF2   A0A067QQJ1   A0A195EXH4   A0A154P154   E0VH53   A0A1B6CJJ8   A0A0N7Z8N3   A0A1B6L2C1   A0A1S3CVN1   A0A0V0GBB0   F4WAX3   A0A158NSN1   A0A0N0BKY5   A0A151WGL7   A0A195DUT8   A0A151I627   A0A195CBA9  

PDB

6NF8     E-value=3.02847e-27,     Score=296

KEGG

101745655    K02959 small subunit ribosomal protein S16 | (RefSeq) probable 28S ribosomal protein S16, mitochondr

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0003735   GO:0006412   GO:0005763   GO:0032543   GO:0005622   GO:0009166   GO:0005839   GO:0051603   GO:0046835   GO:0006281   GO:0006259  

PANTHER

PTHR12919  

Subcellular location

Mitochondrion  

Length:

134

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.21044

Exp number, first 60 AAs:

0.00055

Total prob of N-in:

0.03108

outside

1  -  134

 

 

Pi

174.753572

Theta

151.204633

Tajima's D

0.152097

CLR

1.112169

CSRT

0.408329583520824

Interpretation

Uncertain