Gene

KWMTBOMO16314

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr28(-):5245140-5246218      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.792

CDS

ATGACACTGGTTGCATCGCAAAGCATTGTTAAGATCCAAACAGACCTATCGGATCCTTTTAGAACCCATGATGGACTAAGGCAGGGTGATGCCCTCTCCTGCCTTCTTTTCAATGTTGCACTCGATAAGTGTATCCGTGACTCAGCAATAGAGACGACGGGCAATATATATTACAAATCCGCTCAAGTACTGGGATATGCGGATGATATTGACGTCATTGGCAGATCAGCTCTCGCAGTAGAAAGTGCGTACCTTGCTCTCGAGGCCTCGTCTCTCGAAGCCGGTCTCCAAGTAAACGCAGACAAAACTAAATTCCTGAGGGTGTCGAGGGACTTACGTGAGGACACAGCGCATAAAAATATTGGCCAGCATACTTTTGGATCTGTGAATGAATTTGTATATCTTGGTTCTCTGATAACGAATAATAATAATATAACAGCAGAAATAGTTAAGAGAATACTGTCGGCGAATAAATGCTACTTCGGCCTGCTTAAATATTTCTGTTCCAAAATTCTGTCACGAAATATCAAAATTCTTTTATACAAGACCCTACTGAGACCCATTCTTATTTATGGCTCAGAGACATGGGTACTCAGCAAAAAAGATGAGAACCGGCTACTTGTGTTCGAGCGTAAGATTCTAAGACGGATATTCGGTGCTGTGCGGGAAAACCAGATATGGAGGACGCGCTATAACCACGAGTTGTATGATGTTTACAAAGATCCTAACATCATAACAACTATAAAGATTGGACGCCTACGATGGGCAGGACATGTGGTTCGAATGGAGAGTACCAGAATGCCAAGACAATTGCTCTATGGCAAACCAGAGGGCCGCAGAAGTCGTGGCAGACCCAAACTTCGATGGTTGGATGGCGTGGAGCGCGACCTCAAAAATATCGGCGTCAAGAACTGGAAGGAGAAAGCCCTGAACAGAGCAGTCTGGAGAGACATACTGGACCAGGCTAAGGCCCACCCTGGGCTGTAA

Protein

MTLVASQSIVKIQTDLSDPFRTHDGLRQGDALSCLLFNVALDKCIRDSAIETTGNIYYKSAQVLGYADDIDVIGRSALAVESAYLALEASSLEAGLQVNADKTKFLRVSRDLREDTAHKNIGQHTFGSVNEFVYLGSLITNNNNITAEIVKRILSANKCYFGLLKYFCSKILSRNIKILLYKTLLRPILIYGSETWVLSKKDENRLLVFERKILRRIFGAVRENQIWRTRYNHELYDVYKDPNIITTIKIGRLRWAGHVVRMESTRMPRQLLYGKPEGRRSRGRPKLRWLDGVERDLKNIGVKNWKEKALNRAVWRDILDQAKAHPGL

Uniprot

D7F170   A0A2P8YGI5   A0A2P8ZAY7   A0A023F0H0   A0A0A9Y0T5   A0A023F0F3   + More
A0A0K8TJE5   A0A0K8SN56   A0A2L2YD33   A0A2P8Z0K7   A0A023EZ18   A0A2J7QCQ8   A0A0K8TRS6   A0A2M4BN64   A0A367YPS2   A0A2L2YFD0   A0A2M4CRR0   A0A2M4CRT4   A0A2M4A6U1   A0A0N8NYW2   A0A3N0CRI3   A0A2M4A3Y0   A0A0N8P264   A0A2M4A3Z2   A0A0E4GBH7   A0A0P8Y4M6   A0A2M4A2X8   A0A2M4A809   A0A2M4ACI4   A0A146KNZ7   A0A2M4A3H0   A0A0P8Y6K1   A0A0N8NZU6   A0A0B4GMM2   A0A0P9A604   A0A0P8ZWR4   A0A0P8Y5F3   A0A2P8YTB7   A0A0U4HM41   A0A023EXX8   A0A034V1D7   A0A0J7KMY2   A0A023EZ68   A0A0K8S3X2   A0A2P8ZCD0   A0A0V0G8V1   T1E1T8   A0A2P8YYC9   A0A023F0M0   A0A2P8YFW0   A0A1B0DRK3   A0A0A9WEG0   A0A2P8XC08   A0A0A9WI21   A0A069DWW0   A0A3L8DXX9   A0A0P8Y3A6   A0A0P9BSL5   A0A0P8XIG1   A0A0P9AMX6   A0A0P9AAF4   A0A0P8Y7V9   A0A0P8XJ08   A0A0P8XDM7   A0A0P8Y0P3   A0A023EWL3   A0A2P8YLJ1   A0A0R3Q7D3   A0A2P8Y7F0   A0A3L8DEM2   A0A0Q9WVM4   A0A2P8YPE1   A0A2S2N6G4   A0A2P8Z488   A0A2P8ZIH1   A0A0V0G616   A0A2S2PCU1   A0A2P8ZLT6   A0A2S2NQ16   A0A060Q6A2   A0A2P8ZFZ0   A0A2J7PD61   A0A2P8YWA2   A0A2P8ZET0   A0A2P8Y2S1   A0A2P8ZGH9   A0A2P8Z313   A0A1B6G8C4   A0A1B6HD49   A0A2S2PIT5   A0A023EX67   J9LFP1   A0A1B6JBJ4   A0A2P8XT91   A0A2P8Z9L8   A0A2P8Z3H5   A0A2S2N711  

Pubmed

20470440    29403074    25474469    25401762    26561354    26369729    + More
17994087    26823975    25368161    25527032    24945155    25348373    24330624    26334808    30249741    18057021   

EMBL

FJ265555    ADI61823.1    PYGN01000613    PSN43351.1    PYGN01000119    PSN53667.1    + More
GBBI01004263    JAC14449.1    GBHO01016952    JAG26652.1    GBBI01004261    JAC14451.1    GBRD01000202    JAG65619.1    GBRD01011073    JAG54751.1    IAAA01017080    LAA06072.1    PYGN01000254    PSN50032.1    GBBI01004262    JAC14450.1    NEVH01016288    PNF26362.1    GDAI01000742    JAI16861.1    GGFJ01005240    MBW54381.1    QOUI01000020    RCK67885.1    IAAA01017079    LAA06070.1    GGFL01003846    MBW68024.1    GGFL01003845    MBW68023.1    GGFK01003183    MBW36504.1    CH902961    KPU72636.1    RAPH01000014    RNL66055.1    GGFK01002192    MBW35513.1    CH905131    KPU81852.1    GGFK01002196    MBW35517.1    HACL01000173    CFW94467.1    CH902619    KPU76535.1    GGFK01001798    MBW35119.1    GGFK01003613    MBW36934.1    GGFK01005184    MBW38505.1    GDHC01021627    JAP97001.1    GGFK01001949    MBW35270.1    CH902653    KPU74858.1    CH902657    KPU75308.1    AZNE01000717    KID80942.1    CH902621    KPU81727.1    CH902626    KPU79149.1    CH904714    KPU81814.1    PYGN01000372    PSN47498.1    KU311054    ALX81665.1    GAPW01000199    JAC13399.1    GAKP01022638    GAKP01022636    GAKP01022635    JAC36314.1    LBMM01005351    KMQ91586.1    GBBI01004199    JAC14513.1    GBRD01017846    JAG47981.1    PYGN01000106    PSN54154.1    GECL01001585    JAP04539.1    GALA01001775    JAA93077.1    PYGN01000287    PSN49259.1    GBBI01004198    JAC14514.1    PYGN01000629    PSN43121.1    AJVK01001578    GBHO01037470    JAG06134.1    PYGN01003402    PSN29545.1    GBHO01037471    GBRD01009355    GBRD01009354    GDHC01014856    GDHC01007898    JAG06133.1    JAG56469.1    JAQ03773.1    JAQ10731.1    GBGD01000331    JAC88558.1    QOIP01000003    RLU25142.1    CH902714    KPU81861.1    CH902633    KPU74667.1    CH902666    KPU74610.1    CH902618    KPU79125.1    CH902622    KPU75266.1    KPU77326.1    CH902630    KPU77522.1    CH902627    KPU74872.1    CH902623    KPU72899.1    CH902628    KPU75346.1    GAPW01000120    JAC13478.1    PYGN01000510    PSN45119.1    UZAG01001147    VDO10529.1    PYGN01000836    PSN40188.1    QOIP01000009    RLU18885.1    CH963259    KRF97428.1    PYGN01000451    PSN46127.1    GGMR01000126    MBY12745.1    PYGN01000203    PSN51319.1    PYGN01000047    PSN56294.1    GECL01002632    JAP03492.1    GGMR01014652    MBY27271.1    PYGN01000020    PSN57453.1    GGMR01006433    MBY19052.1    HE799691    CCH14900.1    PYGN01000070    PSN55417.1    NEVH01026393    PNF14276.1    PYGN01000324    PSN48495.1    PYGN01000078    PSN55011.1    PYGN01001004    PSN38555.1    PYGN01000064    PSN55609.1    PYGN01000219    PSN50892.1    GECZ01011079    JAS58690.1    GECU01035086    JAS72620.1    GGMR01016675    MBY29294.1    GAPW01000107    JAC13491.1    ABLF02066124    GECU01011157    JAS96549.1    PYGN01001382    PSN35227.1    PYGN01000136    PSN53184.1    PYGN01000212    PSN51056.1    GGMR01000301    MBY12920.1   

Proteomes

UP000245037    UP000235965    UP000252770    UP000007801    UP000279711    UP000031176    + More
UP000036403    UP000092462    UP000279307    UP000050602    UP000007798    UP000007819   

PRIDE

D7F170   

Pfam

PF00078   RVT_1        + More
PF03372   Exo_endo_phos
PF14529   Exo_endo_phos_2

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F170   A0A2P8YGI5   A0A2P8ZAY7   A0A023F0H0   A0A0A9Y0T5   A0A023F0F3   + More
A0A0K8TJE5   A0A0K8SN56   A0A2L2YD33   A0A2P8Z0K7   A0A023EZ18   A0A2J7QCQ8   A0A0K8TRS6   A0A2M4BN64   A0A367YPS2   A0A2L2YFD0   A0A2M4CRR0   A0A2M4CRT4   A0A2M4A6U1   A0A0N8NYW2   A0A3N0CRI3   A0A2M4A3Y0   A0A0N8P264   A0A2M4A3Z2   A0A0E4GBH7   A0A0P8Y4M6   A0A2M4A2X8   A0A2M4A809   A0A2M4ACI4   A0A146KNZ7   A0A2M4A3H0   A0A0P8Y6K1   A0A0N8NZU6   A0A0B4GMM2   A0A0P9A604   A0A0P8ZWR4   A0A0P8Y5F3   A0A2P8YTB7   A0A0U4HM41   A0A023EXX8   A0A034V1D7   A0A0J7KMY2   A0A023EZ68   A0A0K8S3X2   A0A2P8ZCD0   A0A0V0G8V1   T1E1T8   A0A2P8YYC9   A0A023F0M0   A0A2P8YFW0   A0A1B0DRK3   A0A0A9WEG0   A0A2P8XC08   A0A0A9WI21   A0A069DWW0   A0A3L8DXX9   A0A0P8Y3A6   A0A0P9BSL5   A0A0P8XIG1   A0A0P9AMX6   A0A0P9AAF4   A0A0P8Y7V9   A0A0P8XJ08   A0A0P8XDM7   A0A0P8Y0P3   A0A023EWL3   A0A2P8YLJ1   A0A0R3Q7D3   A0A2P8Y7F0   A0A3L8DEM2   A0A0Q9WVM4   A0A2P8YPE1   A0A2S2N6G4   A0A2P8Z488   A0A2P8ZIH1   A0A0V0G616   A0A2S2PCU1   A0A2P8ZLT6   A0A2S2NQ16   A0A060Q6A2   A0A2P8ZFZ0   A0A2J7PD61   A0A2P8YWA2   A0A2P8ZET0   A0A2P8Y2S1   A0A2P8ZGH9   A0A2P8Z313   A0A1B6G8C4   A0A1B6HD49   A0A2S2PIT5   A0A023EX67   J9LFP1   A0A1B6JBJ4   A0A2P8XT91   A0A2P8Z9L8   A0A2P8Z3H5   A0A2S2N711  

KEGG

101744029    no KO assigned | (RefSeq) nascent polypeptide-associated complex subunit alpha, muscle-specific form

GO

GO:0003964   GO:0004519  

Length:

328

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02161

Exp number, first 60 AAs:

0.00011

Total prob of N-in:

0.01456

outside

1  -  328

 

 

Pi

301.86422

Theta

213.861178

Tajima's D

1.293667

CLR

0

CSRT

0.738463076846158

Interpretation

Uncertain