Silkworm Genome Informatics Database

Gene

KWMTBOMO16305

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_A-kinase_anchor_protein_13_[Bombyx_mori]

Location

Bomo_Chr28(+):5021741-5046943 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.464

CDS

ATGAATGTGCCATCACAAGAAAATGCTGGTTTATTATCCTCAGACGAGGTGGGTGGCAGTTCGGACACTCGTTCCGACAGCAGCGAAGACGAGGTCACCGAGCACGTGACGAGATCCACACCACCACCGAACATGGCTGCCGCCAGAGCACAGGTGCCAACCATAAGCGTGACCCCGCACAGCCCGGGAGTACTGGAAGACAGCTTACAACAGCTAAGACGCCTCCATGCTGCCGTGCAACGGATGCGAGCTGCTCCACTGCCTTTATTGGCAACCGGCACGAGTAGACTAAGCACATCATGCCCCTCGCTCTGCAAGGACGGGGTTATCGAACCTGAATGCTCGTCGCCGACGAATCTGGAATTCTACTCGCAGAGCCGTAAGGGCAGCGGTGAATCGCGTCAGTGGGGTCTGTGGGAGAGGCGCGATGAGGGACGCCGCAGCTCGTGGGCCGCGCTTGAGCCGGGCGCACGACACGACACGCGACACGACGCACGACACGACGCGCACAGACAACGCAGGTATAACGACCCAACCCTACCCACTTTGGAACCGCGCGAGATTTAA

Protein

MNVPSQENAGLLSSDEVGGSSDTRSDSSEDEVTEHVTRSTPPPNMAAARAQVPTISVTPHSPGVLEDSLQQLRRLHAAVQRMRAAPLPLLATGTSRLSTSCPSLCKDGVIEPECSSPTNLEFYSQSRKGSGESRQWGLWERRDEGRRSSWAALEPGARHDTRHDARHDAHRQRRYNDPTLPTLEPREI

Uniprot

A0A2A4J4T9 A0A2A4J3K4 A0A2A4J4X7 A0A0N1IA73 A0A0L7KUK7 A0A1Y1N712 + More
A0A1Y1N8Q1 A0A1Y1N5U2 A0A1Y1N5S4 A0A1Y1N9E0 A0A1Y1NAJ4 A0A1Y1N5N1 A0A1Y1N719 A0A1Y1NC98 A0A1Y1N680 A0A2H8TN70

Pubmed

26354079 26227816 28004739

EMBL

NWSH01003367 PCG66450.1 PCG66449.1 PCG66452.1 KQ459166 KPJ03581.1 + More
JTDY01005473 KOB66962.1 GEZM01012054 JAV93238.1 GEZM01012052 JAV93240.1 GEZM01012048 JAV93244.1 GEZM01012049 JAV93243.1 GEZM01012047 JAV93245.1 GEZM01012046 JAV93246.1 GEZM01012050 JAV93242.1 GEZM01012044 JAV93248.1 GEZM01012045 JAV93247.1 GEZM01012053 JAV93239.1 GFXV01002923 MBW14728.1

Proteomes

UP000218220 UP000053268 UP000037510

Pfam

PF17838 PH_16 + More
PF00621 RhoGEF

Interpro

IPR035899   DBL_dom_sf        + More
IPR041020   PH_16
IPR011993   PH-like_dom_sf
IPR001849   PH_domain
IPR000219   DH-domain
IPR002219   PE/DAG-bd

SUPFAM

SSF48065 SSF48065

Gene 3D

1.20.900.10 2.30.29.30

CDD

cd00160 RhoGEF

ProteinModelPortal

A0A2A4J4T9 A0A2A4J3K4 A0A2A4J4X7 A0A0N1IA73 A0A0L7KUK7 A0A1Y1N712 + More
A0A1Y1N8Q1 A0A1Y1N5U2 A0A1Y1N5S4 A0A1Y1N9E0 A0A1Y1NAJ4 A0A1Y1N5N1 A0A1Y1N719 A0A1Y1NC98 A0A1Y1N680 A0A2H8TN70

KEGG

101738243 K21066 A-kinase anchor protein 18 | (RefSeq) A-kinase anchor protein 13

GO

GO:0035023 GO:0005089 GO:0035556 GO:0016301

Length:

188

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00037

Exp number, first 60 AAs:

0.00014

Total prob of N-in:

0.08759

outside

1 - 188

Pi

218.095313

Theta

178.097008

Tajima's D

1.004326

CLR

1.948411

CSRT

0.656717164141793

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics