SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16302
Pre Gene Modal
BGIBMGA014020
Annotation
PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.351
 

Sequence

CDS
ATGTCTGATGCTCCAGAGCCAAACATTACATTATTTATTTACAGAAAAGTAAAGGGAAAAGGAAAAGACAGGGAAGAAGACACGCAAGTCTGGGGCTCATGCCCACTTTTACCGGGGGTACCGACTGTACCTCCCCAACATGTACCTCAGCCGTGGGAGCTACAACGTTCACACGATAATTGTGTGGATATCAAAAAGGAGGAGGAGGATGACGATGATGTTATGGAGGGCACAACTCCCGACTTCATGATCCCGCTGCGACTGCTTGCCCAGGCGGTGCAGTCTGCTGGCACGCCTGCACGGACCGCTCAAGAACCTGTCATGGAAATCACGAAGGAGGAAGAGGAGGACGATTATGTTATTGAGGGCACAACTCCCGACTTCATGATTCCTCAGCCACCGCTTATCCAGGCGGTGCAGTCTGCTGACACGCCTGCACGGACCGCTCAAGAACCTGTCATGGAAATCACGAAGGAGGAGGAGGAGGACGATGATGTTATGGAGGGCACAACTCCCGACTTCATGATCCCGCTGCGACTGCTTGCCCAGACGGTGCAGTCTGCTGGCACGCCTGCACAAACCGCTCAAGAACCTATCATGGAAATCACGAAGGAGGAAGAGGAGGACGATTATGTTATTGAGGGCACAACTCCCGACTTCATGATCCCGCAGCCACCGCTTGCCCAGGCGGTGCAGTCTGCTGGCACGCCTGCACGAACCGCTGAAGAACCTGTCATGGATGTCGAAGTACATATCAAGCGCGACTTCAAAGAGCCTGGCGAAGGCAGCGAGGTTGAACTTGAAGAAGATCCTGTCGATATTACCTTGAAGCCAAGGAAAGTCGACGAATATCCAGTGGACAGTGAGAGCTTAGCGGCCCCGTCGCTAGTTGAGGCAATAAATAGTATTGATGCTGAAGCCGACTTAGCCCTTCGGACCGTCTTAGATCCCGGACCCGATCAAGACTTGCTCAGCTTCGATTGGCGATGCGATGCGGAGAATTTCGAGGGAGTCAGGGAAGTTTTTACTGTTCCGTCTACTGGCCCAACTTTTAAAAGCGCGGAACTAACTCCCTTGGGAGTCTTTCTGAAAATTTGGGATGCCGATATTATCGCCCGCATAGTCCGCGAGACCAATCGGTATGGTGGTGAAATGTTAAGGCGTAATGAGAAGCCCAACTCCAGGCTGAAACGGTGGCAGGACGTTACCGATGACGACATAAAAAAGTTTTTCGCTATTATCATATTGCAGTCGCTGGTAACAAACAATGTGGAGCGAGAATATTGGTATCCCAAATTAGATGAACTCCGAATTGGGAATTTCGGTGACATCATGCCCTACAACCGGTTTTTGATAATCAAACGTTGTCTACATTTTGTAAACAACGCGTCCTTGCCCGTGCCTTCTAACAGACTCGACAAAATTATGCCCGTCATTGAGCACCTAAATGAAAAATTTAGCTCCCTATACATACTTGAGCAAAATGTGGCAATTGACGAGTCACTCCTTTTATGGAAGGGGCGACTCACATTTTCGCAAAAAATTGACAAAAAAAAAGCGAGAGTAGGTATGAAAAGCTACGAGTTGTACGAGTCGAGGACCGGCTATTTGTGGAGGATGGAGGTTTACTCGGGCAAGGGACACATTCATGTTGCGCAGATTGTGCTCACTTTGATGAGACCTTTATTTAATAGAGGCCATACACTCGTTATGGACAATTTTTATAACGCGCCACTTCTATCTCGGATCCTCAAAGTGAAGCACAAAACAGATTCGATGGGCGCTCTCCGACTCATCAGGGAGTTTGTTCCGGAAGGCTTAAGAGAAAAGGCAAAAAAAAACATGAAAGCGGGAGAGGTGGCTTTCAGCACGACCAAAGACTTGAGTGTAGAAGTGTGGATGGACAAAAACGTAGTTGCAATGATCTCCACATTCCACCAAGTAAAAATCGGCGGAATTGAAAAATATGGGTACTATAGATACAAACCCCAAGTAGTACTTGACTACAACCTCTCTATGGATGGCTTAAACCATAAAGATCAAATGCTGCAAGCCTACCCTATGGAGAAAGTGAGAAAAATCATCTGGTACAAAAAACTCTTCCGCCGATTGGTCAATGTGTCAATACATAATTCCTTTGTTTTGTTCAACCACAACCGCACTCAAGTCATTGGAAATCGTGAGTTTCGGCTGCAGTTGGTGAAGGAGCTACTGCAAGTGTGTGGACCTAGGGCAATTCCTCGGCCAATAGAACCAGTGGCACCAGCCGCACCATCGCAGATGCATTTGCCTGTAAAAAATGAGCGATCGCAGCGCTGTAAGATGTGTCACGCAGCCAAAGTGCGTCGCACGACGGTGTGGAGGTGCAGCACCTGCGCAGTGAACTTGTGCATCGAAGGCTGCTACATTGAGTACCATAAATAG
Protein
MSDAPEPNITLFIYRKVKGKGKDREEDTQVWGSCPLLPGVPTVPPQHVPQPWELQRSHDNCVDIKKEEEDDDDVMEGTTPDFMIPLRLLAQAVQSAGTPARTAQEPVMEITKEEEEDDYVIEGTTPDFMIPQPPLIQAVQSADTPARTAQEPVMEITKEEEEDDDVMEGTTPDFMIPLRLLAQTVQSAGTPAQTAQEPIMEITKEEEEDDYVIEGTTPDFMIPQPPLAQAVQSAGTPARTAEEPVMDVEVHIKRDFKEPGEGSEVELEEDPVDITLKPRKVDEYPVDSESLAAPSLVEAINSIDAEADLALRTVLDPGPDQDLLSFDWRCDAENFEGVREVFTVPSTGPTFKSAELTPLGVFLKIWDADIIARIVRETNRYGGEMLRRNEKPNSRLKRWQDVTDDDIKKFFAIIILQSLVTNNVEREYWYPKLDELRIGNFGDIMPYNRFLIIKRCLHFVNNASLPVPSNRLDKIMPVIEHLNEKFSSLYILEQNVAIDESLLLWKGRLTFSQKIDKKKARVGMKSYELYESRTGYLWRMEVYSGKGHIHVAQIVLTLMRPLFNRGHTLVMDNFYNAPLLSRILKVKHKTDSMGALRLIREFVPEGLREKAKKNMKAGEVAFSTTKDLSVEVWMDKNVVAMISTFHQVKIGGIEKYGYYRYKPQVVLDYNLSMDGLNHKDQMLQAYPMEKVRKIIWYKKLFRRLVNVSIHNSFVLFNHNRTQVIGNREFRLQLVKELLQVCGPRAIPRPIEPVAPAAPSQMHLPVKNERSQRCKMCHAAKVRRTTVWRCSTCAVNLCIEGCYIEYHK

Summary

Pfam
PF13843   DDE_Tnp_1_7        + More
PF13842   Tnp_zf-ribbon_2
PF00096   zf-C2H2
Interpro
IPR018159   Spectrin/alpha-actinin        + More
IPR029526   PGBD       
IPR032718   PGBD4_C_Znf-ribbon       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
SUPFAM
SSF57667   SSF57667       

Ontologies

Topology

Length:
807
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02565
Exp number, first 60 AAs:
0.00017
Total prob of N-in:
0.00005
outside
1  -  807
 
 

Population Genetic Test Statistics

Pi
379.901418
Theta
205.536218
Tajima's D
2.882504
CLR
2.838565
CSRT
0.974101294935253
Interpretation
Possibly Balancing Selection
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