Silkworm Genome Informatics Database

Gene

KWMTBOMO16300

Pre Gene Modal

BGIBMGA010729

Annotation

hypothetical_protein_AB894_15365?_partial_[Piscirickettsia_salmonis_LF-89_%3D_ATCC_VR-1361]

Location

Bomo_Chr28(+):4888911-4894189 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.818

CDS

ATGTCAAAGTCAAGTACAGGTAGAGGTAAAAATAATAAAACACGTGAACGTTCTCCGAATCCTGGACTGTACCAACAACTTCAAGCGATTGTATCTCGCCTGAATGCGTTGGAAGACAATTCAAGGTCTGGTATAGCGACTGTTGTTGAGAGGCAGCCTGCGGTGGAGTCATCGGGATCGGCGGGCAGTGCTGTGGTGCCGTGCGTGGTTTTGGCTTCTGAGCAAAGCACGACACCGCCATTGGTGCCTACGCCGGTTCCACGAGTTTCCGCTGACGATTGCGTCGCTGCCGAGGTAGCCGGTAAAATTGTAAGAGCAATTAATGAATTGAATCTGGTAAGGCCGAACCATATTTATATATCAAACTTTGATCCCGATTTAAATGATATTAATGTTTGGTGTGATGAAGTTGATCATGCACGTGTCATTTATAGGTGGACCGATAGGGAGTGCTTATCTCATATTGGTAATTGCCTTAAAGGCGATGCTCGTGTGTGGTTAAATGAATGGGTCACCAATGACCGTAGCTGGTCTAATTTTAAACGCGAGTTTAAGCCGTTGTGTCCCCGTCGGGTAGATGTTGCAAATATCCTTTTTGATGTTATGAAAACCGATTCCAACAACTATCCTACATACGCGGAATATGTTAGGCGATCTTTATTGCGTCTTCGTATAGTAAATGGACTTAGTGACGAATTAGTTTCAGCAATAGTGATCCGGGGTATCGTTGATCCACAAATTCGTGCGGCCGCTACAAACGCGAGGTTATTGCCTAACGATTTAGTTGAGTTTTTCTCCATATATGTAAAACCTACACCTCAAACAAAAACAAATCATAATACTCGTACTGTCGCTGGTCGCTTTCATAATACACAATTCTCATCACGTAAAAGAGAGCATAGTTCTAGTAGAACCGGTTGTTACGTATGTGGATCATTTGGCCATAGACAAGTGAATTGCCCTAAGCGAACGAGAAAACGTTCGCCTACTGTGAATGATAGATTCACATCTGTACCCGCTGCCAGCTCCTCTGTGCAGAAGCCTGAACCTTGTTCTTTTTGTAAAAAGCTGGGCCATAAAGTAGAGCAGTGTTTCTTTAAGCAGCGTTCTGAAGCTCGTGGAAAATCTAACGTGAATTTTTGCCGTGATACTGTAAATGACTATAGAAAAAATGATATAGCTACTGCGATCGTACAGGGTGTACCAGTCGATATCCTGATAGATAGTGGATCCACAGTCTCGCTTATGTCTGAATCAATTGTAAAACATTTTCAATGTAAACGAGTACCCTCATTTTGCGTGTTACGAGGAATTGGTGACTGTGACACTGAATCTCACTATTTTACTACTTTGACAGTTGAGTTTCCCGAAATTACGCTAGAAATAGACTTTCAAATTGTTAGTGACAAGTTCATGAATACCCCAGTCATAATCGGTACTGACGTTTTGAATCGGGAAGGTGTCACGTATATTAGGAAAAAGGGCATACAGCGCTTAACTCGGGTAGAAAAGGTTTTTACTGCTGAGACAACTGAACTTAATTCAATCCCTACCGTGAATACTTCATTAACAGGTGAAGAAAAAAATAAATTATTAGCTTTGGTACGAAAATTTTCAAAATACCTTATAACTGGTACCGCGGCCAGTACTGTTACAACTGGATCCATGCAAATTCGACTCAGCAATGAAACTCCTATTGTTTACAGACCTTACAAATTATCATTTAGCGAAAAACTTCGCGTTAGAGAAATTATTAAGGATCTTCTTGATAAAGGTGTGATTAGGGAGTCTGAATCGGAGTTCTCGAGTCCGATATTGCTAGTTAAGAAAAAGGACGGCAGTGACAGGATGTGCGTGGACTTTCGGGCTCTTAATGCGAATACTGTGAAGGATCGCTATCCATTGCCGTTAATAGACGATCACATTGACCGGTTAGGTAGCGCAAAATATTTTACAAGCCTCGATATGGCCACTGGTTTCCACCAGATTCCTTTAGCAAACGACTCCATTCACAAAACCGGCTTTGTGACACCCGAAGGTCATTTTGAATACCTTAAAATGCCCTACGGGTTAGCCAATGCCCCGGTTGTTTATCAACGTATTATAACTAATACTCTGAAAGCCTTTAGTGAGACAGGGAGGGCTTTAATATATATCGATGATGTTTTAATACCTAGTCAGACCATTGATGAAGGCCTAAATACTCTGCGTGAAATCTTTGAAACACTAACTAAGGCGGGCTTCTCGATTAATTTAAAAAAATGCAAGTTTCTTGCTAACGAAATTGAATATTTGGGCAGAACTATCAGCAATGGTCAGGTTAGGCCGAGTACGTATAAAGTAGAAGCATTGACAAGAGCCCCGAAGCCTGGTAATGTTAAACAAGCTAGACAATTTTTAGAAGTACACACTGATGCTTCTTCTCGAGGGTATGGAGCTGTTTTACTTCAGACTCATGGGAATAATAATAAACGCGTGGTGGGATATTTTAGTAAAGTTACCCAAGGCGCCGAACCACGCTATCACTCCTATGAGCTGGAGACACTCGCTGTGGTCAAGGCTCTGCAGCATTTCAGGCACTACCTCATAGAAGTTTTGTGGAAACTGCAGCTCACCCTGAACGTTACGAAACAAAAGTCCACTCAATATTCACCTTTATATTTGTTAATTGGTAGCGATGCTGTGACGCCCGTCATTCGTTCCGTTGTACGCGATGTGGCTCTAGAAGGAACAAGTGCCAACAGAGAAACCTTACGCGAGCTTGCCCGACAAAGAGCTTCTCAACTGCTGGACAAAAACCGAAAACAGCAGGACACTCGAGTAAATGAACGGCGCAAACCCCCGCGTACTTTCCATGAAAACGACGTGGTCTTCGTGCATAAGAATAGCCAATCTGTTGGAAAGCTGGATTCTGGTATGCGTGGCCCGTACAAAATAGTGCGTGCGCTGCCACATGGACGTTATGAACTGAAGCTTCTTTCTGGCTCACTTGGGAAGACCACGGAAGCTGCTGCCGAATTTATAAGTGCGTGGCACGGAGAGTGGACGCCGGATGTGTGCACCGCATTTTTCGAGTGTGATGAGAATAGCTCTGAGGAAGGTATTGTCGCCGGTCCATCACACCACCATGACGACATAGTACCTCTAGACGGACCTATTAATGCGGGCGAGGACGCTCCGCCGTCAGGAGAGGCCGTGTTAGAAGATGATGATGACATTGGAGGCGTGGCCTAA

Protein

MSKSSTGRGKNNKTRERSPNPGLYQQLQAIVSRLNALEDNSRSGIATVVERQPAVESSGSAGSAVVPCVVLASEQSTTPPLVPTPVPRVSADDCVAAEVAGKIVRAINELNLVRPNHIYISNFDPDLNDINVWCDEVDHARVIYRWTDRECLSHIGNCLKGDARVWLNEWVTNDRSWSNFKREFKPLCPRRVDVANILFDVMKTDSNNYPTYAEYVRRSLLRLRIVNGLSDELVSAIVIRGIVDPQIRAAATNARLLPNDLVEFFSIYVKPTPQTKTNHNTRTVAGRFHNTQFSSRKREHSSSRTGCYVCGSFGHRQVNCPKRTRKRSPTVNDRFTSVPAASSSVQKPEPCSFCKKLGHKVEQCFFKQRSEARGKSNVNFCRDTVNDYRKNDIATAIVQGVPVDILIDSGSTVSLMSESIVKHFQCKRVPSFCVLRGIGDCDTESHYFTTLTVEFPEITLEIDFQIVSDKFMNTPVIIGTDVLNREGVTYIRKKGIQRLTRVEKVFTAETTELNSIPTVNTSLTGEEKNKLLALVRKFSKYLITGTAASTVTTGSMQIRLSNETPIVYRPYKLSFSEKLRVREIIKDLLDKGVIRESESEFSSPILLVKKKDGSDRMCVDFRALNANTVKDRYPLPLIDDHIDRLGSAKYFTSLDMATGFHQIPLANDSIHKTGFVTPEGHFEYLKMPYGLANAPVVYQRIITNTLKAFSETGRALIYIDDVLIPSQTIDEGLNTLREIFETLTKAGFSINLKKCKFLANEIEYLGRTISNGQVRPSTYKVEALTRAPKPGNVKQARQFLEVHTDASSRGYGAVLLQTHGNNNKRVVGYFSKVTQGAEPRYHSYELETLAVVKALQHFRHYLIEVLWKLQLTLNVTKQKSTQYSPLYLLIGSDAVTPVIRSVVRDVALEGTSANRETLRELARQRASQLLDKNRKQQDTRVNERRKPPRTFHENDVVFVHKNSQSVGKLDSGMRGPYKIVRALPHGRYELKLLSGSLGKTTEAAAEFISAWHGEWTPDVCTAFFECDENSSEEGIVAGPSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIGGVA

Uniprot

A0A0A9X1Z8 A0A146M2J2 A0A0K8URI1 A0A2W1BA98 A0A0J7KLK4 A0A146LBK3 + More
A0A146KXF1

Pubmed

25401762 26823975 28756777

EMBL

GBHO01030786 JAG12818.1 GDHC01004980 JAQ13649.1 GDHF01023027 JAI29287.1 + More
KZ150428 PZC70914.1 LBMM01005919 KMQ91096.1 GDHC01014659 JAQ03970.1 GDHC01018907 JAP99721.1

Proteomes

UP000036403

Pfam

PF00078   RVT_1        + More
PF00665   rve
PF00077   RVP
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF03732   Retrotrans_gag
PF00098   zf-CCHC
PF02037   SAP
PF17917   RT_RNaseH

Interpro

IPR001878   Znf_CCHC        + More
IPR012337   RNaseH-like_sf
IPR001969   Aspartic_peptidase_AS
IPR001584   Integrase_cat-core
IPR001995   Peptidase_A2_cat
IPR041577   RT_RNaseH_2
IPR000477   RT_dom
IPR018061   Retropepsins
IPR041588   Integrase_H2C2
IPR036397   RNaseH_sf
IPR021109   Peptidase_aspartic_dom_sf
IPR036875   Znf_CCHC_sf
IPR005162   Retrotrans_gag_dom
IPR036361   SAP_dom_sf
IPR041373   RT_RNaseH
IPR003034   SAP_dom

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630
SSF57756   SSF57756
SSF68906   SSF68906

Gene 3D

2.40.70.10 3.30.420.10 1.10.720.30

ProteinModelPortal

A0A0A9X1Z8 A0A146M2J2 A0A0K8URI1 A0A2W1BA98 A0A0J7KLK4 A0A146LBK3 + More
A0A146KXF1

PDB

4OL8 E-value=1.08692e-47, Score=483

KEGG

101738461 no KO assigned | (RefSeq) uncharacterized LOC101738461

GO

GO:0015074 GO:0003676 GO:0004190 GO:0008270 GO:0006508 GO:0005515 GO:0005839 GO:0051603 GO:0046835 GO:0006281 GO:0006259

Length:

1077

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00899999999999999

Exp number, first 60 AAs:

0.00032

Total prob of N-in:

0.00039

outside

1 - 1077

Pi

2.850221

Theta

24.90555

Tajima's D

-1.503966

CLR

171.270737

CSRT

0.0585470726463677

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree