Gene

KWMTBOMO16287  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA014008

Annotation

PREDICTED:_structural_maintenance_of_chromosomes_protein_4_[Amyelois_transitella]

Location

Bomo_Chr28(+):4012632-4037082      View in EpiBrowser

Full name

Structural maintenance of chromosomes protein      

Location in the cell

Nuclear   Reliability : 3.633

CDS

ATGGGGAAAACGAAAATGATAGATGAACCAATGGATGTCGACGAGGGTCCGTCTACTAGTTCTGCAATTCAGAAAGCGAATGTTGAGGAAACTGAAGACTTCGATCACATTTCTGATGATGAGGAAGGTGGAATACGCATTGGGGATATCTATATACCTCCAGCTCCAAAACCAGCATTAACTTTTGATACAACGGGCCCTCGGCTCATCATTACTCATATCGTTAATGAAAATTTCAAGAGTTACGCTGGCGTACAAGCTTTGGGTCCATTTCATAAGTGTTTTACATCAATCATTGGTCCGAATGGTAGTGGAAAAAGCAATGTGATTGACTCAATGCTGTTTGTATTTGGATATAGAGCATCAAAAATACGTTCTAAGAAGATTTCAGTATTGATACATTCATCCAGTAAATTTCCTAATATTAGTAGTGCAAATGTCTCTGTACATTTCTGTCAGATTATTGATGGGGAAGGAGATGACTTTAAAGTTGTACCAAACAGTGAGATTGTGGTCTCACGGACAGCTTTCAAAGATAACTCGTCTTATTATATGTTGAACGGACGCAGAGTACAATTCAAAGAAGTTGCCAAGATGCTGCGTTCCCACAACATTGATTTGGATCACAATAGATTCTTGATATTGCAAGGTGAAGTCGAACAGATAGCTATGATGAAACCTAAAGCACTAACAGAGCATGAGTCAGGAATGCTGGAGTACTTGGAAGATATCATAGGCACTTCAAGATATAAGGAACCAATAGAAAAATTGTCTATAAAAGTTGAAGAGTATACAGAAATACGTAAAGAGAAATTGAATAGAGTACGTCTGGTCGAACAAGAGAAGTTGAAATTAGAACAGCCAATGAGAGAAGCCGTAGAACTGATGAATTTAACTAATGCCGCTTTGAGAACTAGAAATACATTATTACAGAAATACATATATGAAATCAATAAAATAATAGAAGCTAAAGAAAAGGAAATGGTCGAATTGAAAGATAATCTAGCGAAAATCGACGAAAAGCTGGCCAGACTGAATGAAATTTTGATCGAAAAGACAACCGCATTAAAAAATGGAACTCAAAAATACGACAAGCTGCGTAAGAAAAAAGACGAGATAGCCGAGAAACTTCAGAACTGCAAAAGGAAAACGGTCACAGTGCAGGCTGATACCGCACAGTCTAACAAGAAGAAGAAGAATTTGGAACACCTTTTGGAACAAGAGAGAGGGAAACTCATTGAATTGGAACTAATTCCTGAAAAGAATGAGAGGGAGATCCGAGATTGTGACGAACTGCTGATCAAACATAACGAGGCGAAACGCGTAGCTGATGAAGAATTGCAAGCAGCTGTGGCTGGAGTCAGAGCGAAGACCCAAACCCTCCAAGAGAAGAAAGATAAGCTTCAAATTAAGTTAATCGGTCTAAAGAACATCGTACACGAAGCCAATAAGAAATTCAAACTGACCGAATCGGAATTGAAAATATATCTGAGTACCGAGCAAAAAGAAAACGCCAAGCTAGTCAACATGAAAAACGCATACGACAAAGCCCGCAGTGAAATTGAAGAGAAGAAAAGATTACTACAAGAGCTAACCACGAGTGTTCCGGCTGATGAGAATATGATAGGTGAAATGAAAACGAAATTGGACGGTTTGAAGCGTGAGGAAGCTTCCGTGTCCAGTGAGCTCAGGACTCTAAGGATACAACTAGAAGAATCTAGGCAAGCGATGAGTGCCAATAAATCACGTGGTAGAGTTCTGGACGCGCTGATGAAAGAGAAGAGAAACGGCAATCTACCCGGCATATTTGGCAGATTGGGCGACCTAGGCGGGATCGATCAGAAGTACGACGTCGCTATATCGACGTGTTGCGGTGCGTTGGACAACATAGTTGTGGACACGGTGGAGACCGCGCAGGCCTGCGTCGAGTTCCTCAAGCGGCACGACGTGGGCCGGGCCACGTTCATAGCTCTCGACAAGCAAGAGCATCTGAAGAGGAATTACGAAGACAGGAGTACATACCCAGAGAACGTCCCGCGTCTCTTCGACTTGATCAAAGTGAAGGACGCTCGAGTGTTGCCGGCCTTCTACTTCGGCCTGCGGGACACGCTCGTGGCCGCCGACCTCGAGCAGGCCTCGAGGATCGCGTACGGCTCGACCAGGTACAGGGTTGTGACCCTGAAAGGAGACGTCATCGAAATTGCCGGTACAATGTCGGGAGGCGGGCGGTCGACGATGCGCGGTCGTATGGGCAGCTCGGTGCAGCAGAACACATGCGAGCTGGACCCCGCGGCCGTGCAGACCAGCGAGAGGAAACTAGCTGAGCTCGAACAGAGATTATCTGAATTACGCAACGAGCAGTCAAACGTAGAAGAGTCTTTGTCTGACTTGCAAAGAAAAGCCAAAGAGGGAATGTCGAATTTGAATAAAGTTAAAATTGAAGTGAAGAGCTTGTCACAACTGATACCTGAATTGGAGCAACAAATAAAAGCGCAAGAACGAAGAGCGTCTTCGAGTAAAGTGGACCAGCAACGTAAAGCCGAGCTGGAGGCTGTTCTGCAAGACGCGCAAGAGAAACTGTATGAGGCCACAGGAAATGCTGCAGAGGTCGAAGAACAAGTTAACGAGGTGGAGGCGCAGATATCGAAGATAGCCGGCGGCAAGGTCAAGGACCTACAGAAGAAGGTCACTGAACTTACGGCGAAGATCGATAAGATCGTGACTGAAACTACGAAGCTGAAGGTCGCGATCAGCACCAGCAAGCGGAATGCAAACAAATCGAAAGATAAGATCAATCAGATGGACGCAGATCTCAAAGAAACTGATAAAACTCTAGAAAGTCTGAAAACACAGAAAAAACAACTCGTTTTGGACAGCGAACAATATCAAAAGCAATTCGAAGAGTTGGAGGAGGAAATCAACGAGGGCACCAGTGAATTTTCAGAGCTTAAACAGGAGATAGCGAAATTACAATCGAAAGAAAATAAGCTGAAGAGTGAGCGTTTAGAAGCTGCCAATGCTGTTAGCAAAATGGAGAAGTCCGTGCTCGACTGCAAGAGCAAGATCCCTCTGTGGGAAAAAGAGCTATCAAGTCTAAGGTTAGAAGACTCGGGATTAGACGGCATCCCTGGGGTGGAGAGGCCGGAACCGCTGCGTCAGCACACCCCCGAAGAACTGGAGGAGAGTTCTGTGGATGATCTGAGGAATAAACTGGCAGCTCAGAAGAATAGAGTGGGAGATAATAAACCTAACATACAAGCGATACAGGATTACAAAGCAAAAGAAGACTTATATATAAAGCGCGCCGCCGAATTGGACGAGATAACTACAAAGAGAAACGAAATGAGGGCACTTTATGAACAACTCAGGAAGAAACGTTCGACTGATTTCTTAAGCGGATTCAATACGATAACAATGAAACTGAAAGAGATGTACCAAATGATAACATTGGGAGGCGACGCTGAACTAGAACTTGTTGACTCGCTGGATCCATTCTCCGAAGGGATTATATTCAGCGTGCGTCCGCCGAACAAGTCCTGGAAGAACATATCGAATTTATCGGGCGGCGAGAAGACGTTATCCTCACTGGCCCTGGTTTTCGCTTTACATTACTACAAACCAACGCCTCTGTACGTCATGGACGAGATAGACGCGGCCTTGGACTTCAAAAACGTTTCGATCGTGGCAAACTATATTAAGGAAAGAACGAAGAACGCTCAATTCATAATCATATCGCTTCGATACAACATGTTTGAGGTGTCGAATCGTTTGGTCGGTATATACAAAACTGAAGACTGCACAAAGTCTATAACGATTGAGAACCAGCTACCGGAGCAAGTACGTGTGGACGGTGCGTGA

Protein

MGKTKMIDEPMDVDEGPSTSSAIQKANVEETEDFDHISDDEEGGIRIGDIYIPPAPKPALTFDTTGPRLIITHIVNENFKSYAGVQALGPFHKCFTSIIGPNGSGKSNVIDSMLFVFGYRASKIRSKKISVLIHSSSKFPNISSANVSVHFCQIIDGEGDDFKVVPNSEIVVSRTAFKDNSSYYMLNGRRVQFKEVAKMLRSHNIDLDHNRFLILQGEVEQIAMMKPKALTEHESGMLEYLEDIIGTSRYKEPIEKLSIKVEEYTEIRKEKLNRVRLVEQEKLKLEQPMREAVELMNLTNAALRTRNTLLQKYIYEINKIIEAKEKEMVELKDNLAKIDEKLARLNEILIEKTTALKNGTQKYDKLRKKKDEIAEKLQNCKRKTVTVQADTAQSNKKKKNLEHLLEQERGKLIELELIPEKNEREIRDCDELLIKHNEAKRVADEELQAAVAGVRAKTQTLQEKKDKLQIKLIGLKNIVHEANKKFKLTESELKIYLSTEQKENAKLVNMKNAYDKARSEIEEKKRLLQELTTSVPADENMIGEMKTKLDGLKREEASVSSELRTLRIQLEESRQAMSANKSRGRVLDALMKEKRNGNLPGIFGRLGDLGGIDQKYDVAISTCCGALDNIVVDTVETAQACVEFLKRHDVGRATFIALDKQEHLKRNYEDRSTYPENVPRLFDLIKVKDARVLPAFYFGLRDTLVAADLEQASRIAYGSTRYRVVTLKGDVIEIAGTMSGGGRSTMRGRMGSSVQQNTCELDPAAVQTSERKLAELEQRLSELRNEQSNVEESLSDLQRKAKEGMSNLNKVKIEVKSLSQLIPELEQQIKAQERRASSSKVDQQRKAELEAVLQDAQEKLYEATGNAAEVEEQVNEVEAQISKIAGGKVKDLQKKVTELTAKIDKIVTETTKLKVAISTSKRNANKSKDKINQMDADLKETDKTLESLKTQKKQLVLDSEQYQKQFEELEEEINEGTSEFSELKQEIAKLQSKENKLKSERLEAANAVSKMEKSVLDCKSKIPLWEKELSSLRLEDSGLDGIPGVERPEPLRQHTPEELEESSVDDLRNKLAAQKNRVGDNKPNIQAIQDYKAKEDLYIKRAAELDEITTKRNEMRALYEQLRKKRSTDFLSGFNTITMKLKEMYQMITLGGDAELELVDSLDPFSEGIIFSVRPPNKSWKNISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRYNMFEVSNRLVGIYKTEDCTKSITIENQLPEQVRVDGA

Similarity

Belongs to the SMC family.

Uniprot

H9JWU4   A0A2H1V4J8   A0A2A4K7F0   A0A194PWL2   A0A067RN86   A0A2J7R5W0   + More
A0A2P2HWI0   B0W1N5   A0A1W4WTU8   A0A182MZE7   Q17KK7   A0A1S4EZF6   A0A182XZJ6   A0A1Q3EX78   E9HNW2   A0A1Y1N3Y5   W8CB73   W8BJK3   A0A0L7R1A3   A0A0P6D2R1   A0A0P6HWD9   A0A182P0G1   A0A0P6CZN9   A0A0P6DDZ8   A0A164K6Q2   A0A182QGQ9   A0A0N7ZJD4   A0A1Y9G872   A0A1B6JGM2   A0A154PLL6   A0A0N7ZBS8   A0A182RVL1   A0A0P6A9R5   A0A182JPU5   A0A182MHK4   A0A195AUZ9   A0A1B6M2T8   A0A026W383   A0A182W7U1   A0A158NF09   A0A0J7KRR4   A0A0L0CD60   A0A195E7X8   W5JW29   A0A151XIG5   A0A182VLI8   A0A182J7N8   Q8I951   A0A182IEJ6   A0A182X1L4   A0A182TIE6   Q7Q3D7   F4WEN6   A0A195FN78   A0A084VBB9   A0A0K8WDU8   A0A291S6Z0   A0A1A9Y0C8   A0A310ST14   A0A1B0AS73   E2AE41   A0A1A9X0Q7   A0A1A9VH31   A0A195C677   A0A1B0FMN9   A0A0A1XAR8   A0A1B0A5V0   K1PZC0   A0A088AJD9   A0A2A3E492   A0A146KK78   A0A0A9WJ23   A0A0C9QWR5   E9IWG9   E2BGX0   A0A182L2F1   A0A0M9A2I7   A0A210Q231   A0A232EZC1   A0A291S6Y7   A0A034WHD8   A0A0L8HQW3   T1J4U1   A0A3S1BH02   A0A1I8MEU4   D6WIS4   A7S6N1   A0A0P4YR71   A0A1I8P3Q0   A0A0P5XDJ7   A0A1B0CS89   B3MU91   A0A293LRX8   A0A336MBX2   B4P9A7   Q9U6I2   B4N7D1   Q9V3A7   A0A131Y4Y2  

Pubmed

19121390    26354079    24845553    17510324    25244985    21292972    + More
28004739    24495485    24508170    21347285    26108605    20920257    23761445    14660695    12364791    14747013    17210077    21719571    24438588    28992199    20798317    25830018    22992520    26823975    25401762    21282665    20966253    28812685    28648823    25348373    25315136    18362917    19820115    17615350    17994087    17550304    11102367    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

BABH01018708    BABH01018709    ODYU01000435    SOQ35194.1    NWSH01000053    PCG80167.1    + More
KQ459588    KPI97761.1    KK852570    KDR21154.1    NEVH01006988    PNF36218.1    IACF01000345    LAB66131.1    DS231823    EDS26587.1    CH477223    EAT47219.1    GFDL01015132    JAV19913.1    GL732699    EFX66580.1    GEZM01016903    JAV91056.1    GAMC01005101    JAC01455.1    GAMC01005105    GAMC01005103    JAC01451.1    KQ414668    KOC64623.1    GDIQ01083636    GDIQ01083635    JAN11102.1    GDIQ01013245    JAN81492.1    GDIQ01085185    JAN09552.1    GDIQ01082075    GDIQ01082074    JAN12663.1    LRGB01003375    KZS02992.1    AXCN02000606    GDIP01239665    JAI83736.1    GECU01020271    GECU01018012    GECU01009434    JAS87435.1    JAS89694.1    JAS98272.1    KQ434973    KZC12771.1    GDRN01078941    GDRN01078940    JAI62488.1    GDIP01045394    JAM58321.1    AXCM01006351    KQ976736    KYM76068.1    GEBQ01009745    JAT30232.1    KK107455    EZA50532.1    ADTU01013695    ADTU01013696    LBMM01003978    KMQ92929.1    JRES01000668    KNC29389.1    KQ979479    KYN21313.1    ADMH02000223    ETN67320.1    KQ982080    KYQ60189.1    AJ535206    CAD59406.1    APCN01005204    AAAB01008964    EAA12256.2    GL888103    EGI67399.1    KQ981490    KYN41339.1    ATLV01006319    ATLV01006320    KE524352    KFB35263.1    GDHF01030971    GDHF01005774    GDHF01004187    GDHF01003274    GDHF01000528    JAI21343.1    JAI46540.1    JAI48127.1    JAI49040.1    JAI51786.1    MF433022    ATL75373.1    KQ760688    OAD59356.1    JXJN01002686    GL438827    EFN68274.1    KQ978287    KYM95663.1    CCAG010022065    GBXI01006075    JAD08217.1    JH816771    EKC26993.1    KZ288409    PBC26102.1    GDHC01021645    JAP96983.1    GBHO01035172    JAG08432.1    GBYB01000145    GBYB01000146    JAG69912.1    JAG69913.1    GL766526    EFZ15069.1    GL448228    EFN85102.1    KQ435783    KOX74623.1    NEDP02005220    OWF42818.1    NNAY01001503    OXU23774.1    MF433021    ATL75372.1    GAKP01005241    GAKP01005240    GAKP01005239    JAC53712.1    KQ417506    KOF91579.1    JH431849    RQTK01000243    RUS83429.1    KQ971321    EFA01238.1    DS469588    EDO40646.1    GDIP01225008    JAI98393.1    GDIP01073685    JAM30030.1    AJWK01025803    CH902624    EDV33420.1    GFWV01005818    MAA30548.1    UFQS01000735    UFQT01000735    SSX06482.1    SSX26831.1    CM000158    EDW90236.1    AF185287    AAF13306.1    CH964182    EDW80272.2    AF186472    AE014134    BT031125    AAF01416.1    AAF53560.1    ABX00747.1    GEFM01002815    JAP72981.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000027135    UP000235965    UP000002320    + More
UP000192223    UP000075884    UP000008820    UP000076408    UP000000305    UP000053825    UP000075885    UP000076858    UP000075886    UP000069272    UP000076502    UP000075900    UP000075881    UP000075883    UP000078540    UP000053097    UP000075920    UP000005205    UP000036403    UP000037069    UP000078492    UP000000673    UP000075809    UP000075903    UP000075880    UP000075840    UP000076407    UP000075902    UP000007062    UP000007755    UP000078541    UP000030765    UP000092443    UP000092460    UP000000311    UP000091820    UP000078200    UP000078542    UP000092444    UP000092445    UP000005408    UP000005203    UP000242457    UP000008237    UP000075882    UP000053105    UP000242188    UP000215335    UP000053454    UP000271974    UP000095301    UP000007266    UP000001593    UP000095300    UP000092461    UP000007801    UP000002282    UP000007798    UP000000803   

PRIDE

H9JWU4    Q9U6I2    Q9V3A7   

Pfam

PF06470   SMC_hinge        + More
PF02463   SMC_N
PF07690   MFS_1

Interpro

IPR010935   SMC_hinge        + More
IPR027417   P-loop_NTPase       
IPR024704   SMC       
IPR041738   SMC4_ABC_euk       
IPR036277   SMC_hinge_sf       
IPR003395   RecF/RecN/SMC_N       
IPR020846   MFS_dom       
IPR011701   MFS       
IPR036259   MFS_trans_sf       

SUPFAM

SSF52540   SSF52540        + More
SSF75553   SSF75553       
SSF103473   SSF103473       

CDD

cd03274  ABC_SMC4_euk
cd06174  MFS

ProteinModelPortal

H9JWU4   A0A2H1V4J8   A0A2A4K7F0   A0A194PWL2   A0A067RN86   A0A2J7R5W0   + More
A0A2P2HWI0   B0W1N5   A0A1W4WTU8   A0A182MZE7   Q17KK7   A0A1S4EZF6   A0A182XZJ6   A0A1Q3EX78   E9HNW2   A0A1Y1N3Y5   W8CB73   W8BJK3   A0A0L7R1A3   A0A0P6D2R1   A0A0P6HWD9   A0A182P0G1   A0A0P6CZN9   A0A0P6DDZ8   A0A164K6Q2   A0A182QGQ9   A0A0N7ZJD4   A0A1Y9G872   A0A1B6JGM2   A0A154PLL6   A0A0N7ZBS8   A0A182RVL1   A0A0P6A9R5   A0A182JPU5   A0A182MHK4   A0A195AUZ9   A0A1B6M2T8   A0A026W383   A0A182W7U1   A0A158NF09   A0A0J7KRR4   A0A0L0CD60   A0A195E7X8   W5JW29   A0A151XIG5   A0A182VLI8   A0A182J7N8   Q8I951   A0A182IEJ6   A0A182X1L4   A0A182TIE6   Q7Q3D7   F4WEN6   A0A195FN78   A0A084VBB9   A0A0K8WDU8   A0A291S6Z0   A0A1A9Y0C8   A0A310ST14   A0A1B0AS73   E2AE41   A0A1A9X0Q7   A0A1A9VH31   A0A195C677   A0A1B0FMN9   A0A0A1XAR8   A0A1B0A5V0   K1PZC0   A0A088AJD9   A0A2A3E492   A0A146KK78   A0A0A9WJ23   A0A0C9QWR5   E9IWG9   E2BGX0   A0A182L2F1   A0A0M9A2I7   A0A210Q231   A0A232EZC1   A0A291S6Y7   A0A034WHD8   A0A0L8HQW3   T1J4U1   A0A3S1BH02   A0A1I8MEU4   D6WIS4   A7S6N1   A0A0P4YR71   A0A1I8P3Q0   A0A0P5XDJ7   A0A1B0CS89   B3MU91   A0A293LRX8   A0A336MBX2   B4P9A7   Q9U6I2   B4N7D1   Q9V3A7   A0A131Y4Y2  

PDB

4U4P     E-value=4.47104e-48,     Score=488

KEGG

101737751    K06675 structural maintenance of chromosome 4 | (RefSeq) structural maintenance of chromosomes prote

GO

GO:0005524   GO:0005694   GO:0051276   GO:0005634   GO:0016021   GO:0055085   GO:0051304   GO:0000796   GO:0000785   GO:0005737   GO:0007076   GO:0000278   GO:0030261   GO:0000070   GO:0007419   GO:0046982   GO:0003682   GO:0000819   GO:0016887   GO:0005515   GO:0005839   GO:0051603   GO:0046835   GO:0006281   GO:0006259  

Subcellular location

Nucleus  

Length:

1285

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00776

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00015

outside

1  -  1285

 

 

Pi

238.084988

Theta

157.417254

Tajima's D

1.567465

CLR

0.00262

CSRT

0.79946002699865

Interpretation

Uncertain