SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16275
Annotation
reverse_transcriptase_[Bombyx_mori]
Full name
Probable RNA-directed DNA polymerase from transposon BS      
Alternative Name
Reverse transcriptase
Location in the cell
Mitochondrial   Reliability : 1.488 Nuclear   Reliability : 2.182
 

Sequence

CDS
ATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCTGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTCAAACTATTCAACATGGGTGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTTTCACCCCTCCTATTTAGCTTATTCGTTAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCCAGTAGAAACAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATCTGTAAGCGGAGTAAAATGTCTCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGCAGGTTAGCTGTCGGGGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCAATTCGGAAATACATGAAGTCAGCGTCGGAACGATACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTTGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGATGCCTTCAGCTCTAATACTAGGGGCAGGCTTAGGGACCCCGGTAACCGTACTCGTCGAACTCGACAAAGAGGTCGACGTGCAACCTAA
Protein
MRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSNTRGRLRDPGNRTRRTRQRGRRAT

Summary

Catalytic Activity
a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)
Cofactor
Mg(2+)
Mn(2+)
Keywords
Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  
Feature
chain  Probable RNA-directed DNA polymerase from transposon BS
EC Number
2.7.7.49
EMBL
U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    KQ459259    KPJ02068.1    GEZM01008457    JAV94772.1    GALX01005359    JAB63107.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    GGMR01019198    MBY31817.1    ABLF02042518    ABLF02057746    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02003961    ABLF02059872    GGMS01002955    MBY72158.1    RPOV01000134    RPJ78669.1    GGMS01006359    MBY75562.1    GBBI01004395    JAC14317.1    GGMS01000737    MBY69940.1    GFXV01007093    MBW18898.1    ABLF02033757    GGMR01018716    MBY31335.1    GFTR01008038    JAW08388.1    GGMR01003407    MBY16026.1    GGMR01000676    MBY13295.1    GBBI01001646    JAC17066.1    NEVH01006736    PNF36716.1    GGMR01016114    MBY28733.1    NEVH01000269    PNF43694.1    S59870    AAB26437.2    GGMS01017914    MBY87117.1    ABLF02008463    GGMS01008766    MBY77969.1    GEZM01053022    JAV74219.1    NEVH01017542    PNF24034.1    GEZM01038405    JAV81653.1    NEVH01020940    PNF20481.1    GBBI01004571    JAC14141.1    ABLF02034467    ABLF02021177    ABLF02027367    ABLF02066338    ABLF02008153    ABLF02008462    ABLF02008464    GGMS01012005    MBY81208.1    NEVH01006721    PNF37225.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01022639    PNF18527.1    NEVH01026386    PNF14434.1    GBYB01008290    JAG78057.1    NEVH01020071    PNF21969.1    NWSH01000032    PCG80497.1    ABLF02020655    ABLF02039168    ABLF02061060    GGMS01017365    MBY86568.1    GBGD01000880    JAC88009.1    GFTR01008262    JAW08164.1    NEVH01010546    PNF32261.1    GGFJ01001857    MBW50998.1    GFDF01007661    JAV06423.1    NEVH01002704    PNF41489.1    NEVH01023962    PNF17612.1    NEVH01003017    PNF40781.1    GBGD01000799    JAC88090.1    ABLF02037660    ABLF02024246    NEVH01007443    PNF35684.1    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    GGFJ01001858    MBW50999.1    GGMS01002992    MBY72195.1    NEVH01005938    PNF38077.1    NEVH01001355    PNF42855.1    GEZM01084969    JAV60363.1    NEVH01011193    PNF32021.1    GFTR01008256    JAW08170.1    GFTR01008251    JAW08175.1    AY060438    AAL25477.1    GBBI01001570    JAC17142.1    PCG80496.1    NEVH01007838    PNF34986.1    NEVH01016302    PNF25823.1    NEVH01014858    PNF27387.1    NEVH01021205    PNF19912.1    NEVH01002716    PNF41415.1    NEVH01000280    PNF43672.1    NEVH01019964    PNF22161.1    GGMR01014053    MBY26672.1    NEVH01012089    PNF30491.1    GBBI01001642    JAC17070.1    NEVH01023961    PNF17613.1    NEVH01006754    PNF36554.1    ABLF02028535    ABLF02028545    GBGD01000881    JAC88008.1   
Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE
Interpro
IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
SUPFAM
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
627
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
11.7162799999999
Exp number, first 60 AAs:
0.00348
Total prob of N-in:
0.45496
outside
1  -  627
 
 

Population Genetic Test Statistics

Pi
142.521487
Theta
49.360233
Tajima's D
2.129845
CLR
0.306061
CSRT
0.904204789760512
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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