Gene

KWMTBOMO16271

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr28(+):3430188-3431755      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.02

CDS

ATGTGGTTCCACAGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCGTGGTTGGAGGCGTCCGTATCGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCATCCTGGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGAACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTTCTGCCCAACGTCGGGGGGCCTGACCAGGTGAGGCGCCGTCTCTATACGGGGGTGGTGCGATCAATGGCCCTATACCTGCCACCTGTGTGGGGCCAGTCCCTGGCCGCGGGGGTGGCGAAGCTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGTGGTTATCGCACCATCTCCTTTGAGGCGGCGTGTGTACTGGCTGCGACGCCGCCTTGGATTCTGGAAGCGGAGGCGCTCGCTGCTGACTATCAGTGGCGGGCTGACCTTCGTGCCCGGGGCGTGGCGCGTCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGTCATGGTCCAGACGGCTGGCTGATCCTTCGGCCGGTCGTAGGACCGTCGAGGCGATTCGCCCGGTCCTTGTGGATTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCGGAGCCGAGCCGACGGCAGAGTGCCACCATTGTGGTTGCGACTTGGACACGGCGGAGCACACGCTCGTTGCCTGCCCCGCATGGGAAGGGTGGCGCCGTGTCCTCGTCGCAAAAACAGGAAACGACTTGTCGTTGCTGAGTGTCGTGGCATCGATGCTCGGCGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAATCCCGCCGCCGTCGAGCGAGGGCCAGGGAGGCGGATCTCGCCCAAGCCCTGGCTCTCTAA

Protein

MWFHRPRRVPPVDAHIVVGGVRIGVGVQLKYLGLILDSRWTFRAHFQNLVPRLLGVAGALSRLLPNVGGPDQVRRRLYTGVVRSMALYLPPVWGQSLAAGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAATPPWILEAEALAADYQWRADLRARGVARPSPSVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIRPVLVDWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGAEPTAECHHCGCDLDTAEHTLVACPAWEGWRRVLVAKTGNDLSLLSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQSRRRRARAREADLAQALAL

Uniprot

Q868Q4   Q5KTM7   A0A2W1B333   Q8MY27   A0A2W1BDU5   Q8MY33   + More
Q8MY31   A0A2W1C3J5   Q8MY35   A0A2W1BSQ5   O01419   A0A3S2N998   A0A0J7N1D9   A0A0J7N7H9   A0A0J7KCQ3   E2BVR6   A0A0J7MY07   A0A0L7R7C3   A0A0J7KIY5   A0A0J7KJG6   A0A0J7KJH4   A0A0J7JZ13   A0A0J7KS67   A0A0J7JZF7   A0A0J7KM81   A0A0J7KLT9   A0A3L8DDV9   A0A0J7N7S8   A0A0J7KQK3   A0A3L8DIL1   A0A3L8D2G3   A0A0J7KYD2   A0A0J7KIM6   A0A0J7KIW1   A0A0J7KFG9   A0A0J7KPR0   A0A0J7JYP2   A0A2S2PJ67   A0A0J7K3R6   A0A0J7KL06   A0A0J7NEG9   A0A0J7KIY3   A0A0J7KC11   A0A0J7NMN5   A0A0J7KMU1   A0A0J7K3F1   A0A0J7KPZ3   A0A0J7KWU5   A0A0J7KRB8   A0A2S2P557   J9KNG8   A0A0J7KLH8   A0A0J7NAV8   A0A2S2PEU2   A0A0J7KGJ6   A0A2S2NPF9   A0A0J7K3R2   A0A0J7KP92   A0A0J7JXX4   A0A2S2PDK9   A0A0J7MX22   A0A0J7K6Z4   A0A2S2QW03   A0A2H8THF8   X1WSG8   A0A0J7KF40   A0A2S2P6S8   A0A2S2PSC1   J9KJG8   J9LAC1   A0A0J7N0R3   X1WXT5   A0A0J7MY17   A0A0J7KFH2   A0A0J7KMG5   X1WJY4   E2A7V5   J9LJ80   A0A2S2NME4   A0A0J7NFZ0   J9M4X0   A0A3Q0JIB3  

Pubmed

12644555    28756777    9092665    20798317    30249741   

EMBL

AB090825    BAC57926.1    AB126050    BAD86650.1    KZ150386    PZC71062.1    + More
AB078935    BAC06462.1    KZ150308    PZC71477.1    AB078930    BAC06454.1    AB078931    BAC06456.1    KZ149896    PZC78733.1    AB078929    BAC06452.1    KZ149950    PZC76665.1    D85594    BAA19776.1    RSAL01000481    RVE41577.1    LBMM01012027    KMQ86470.1    LBMM01008861    KMQ88580.1    LBMM01009494    KMQ88097.1    GL450953    EFN80213.1    LBMM01014132    KMQ85305.1    KQ414641    KOC66782.1    LBMM01006954    KMQ90166.1    LBMM01006671    KMQ90407.1    LBMM01006657    KMQ90417.1    LBMM01019839    KMQ83438.1    LBMM01003679    KMQ93242.1    LBMM01019838    KMQ83439.1    LBMM01005634    KMQ91349.1    LBMM01005733    KMQ91252.1    QOIP01000010    RLU18098.1    LBMM01008682    KMQ88705.1    LBMM01004272    KMQ92618.1    QOIP01000007    RLU20280.1    QOIP01000031    RLU14697.1    LBMM01002052    KMQ95336.1    LBMM01007036    KMQ90099.1    LBMM01006725    KMQ90373.1    LBMM01008349    KMQ88951.1    LBMM01004634    KMQ92224.1    LBMM01020849    KMQ83202.1    GGMR01016864    MBY29483.1    LBMM01015018    KMQ84954.1    LBMM01006063    KMQ90967.1    LBMM01006110    KMQ90925.1    LBMM01006909    KMQ90209.1    LBMM01009738    KMQ87908.1    LBMM01003245    KMQ93755.1    LBMM01005216    KMQ91703.1    LBMM01015025    KMQ84953.1    LBMM01004505    KMQ92346.1    LBMM01002480    KMQ94776.1    LBMM01003988    KMQ92922.1    GGMR01011974    MBY24593.1    ABLF02005203    ABLF02041316    LBMM01005948    KMQ91066.1    LBMM01007425    KMQ89740.1    GGMR01015354    MBY27973.1    LBMM01007659    KMQ89538.1    GGMR01006442    MBY19061.1    LBMM01014956    KMQ84982.1    LBMM01004697    KMQ92167.1    LBMM01021647    KMQ83033.1    GGMR01014918    MBY27537.1    LBMM01014909    KMQ85000.1    LBMM01012595    KMQ86127.1    GGMS01012744    MBY81947.1    GFXV01001748    MBW13553.1    ABLF02004597    ABLF02041324    LBMM01008422    KMQ88894.1    GGMR01012534    MBY25153.1    GGMR01019609    MBY32228.1    ABLF02041886    ABLF02017307    LBMM01012412    KMQ86235.1    ABLF02004854    ABLF02041317    LBMM01014122    KMQ85315.1    LBMM01008278    KMQ89009.1    LBMM01005465    KMQ91492.1    ABLF02011238    GL437417    EFN70484.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    GGMR01005740    MBY18359.1    LBMM01005474    KMQ91485.1    ABLF02020647    ABLF02020648   

Proteomes

UP000283053    UP000036403    UP000008237    UP000053825    UP000279307    UP000007819    + More
UP000000311    UP000079169   

PRIDE

Q868Q4    Q5KTM7    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF07776   zf-AD
PF00096   zf-C2H2
PF17919   RT_RNaseH_2
PF00098   zf-CCHC
PF10551   MULE

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR041577   RT_RNaseH_2       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q868Q4   Q5KTM7   A0A2W1B333   Q8MY27   A0A2W1BDU5   Q8MY33   + More
Q8MY31   A0A2W1C3J5   Q8MY35   A0A2W1BSQ5   O01419   A0A3S2N998   A0A0J7N1D9   A0A0J7N7H9   A0A0J7KCQ3   E2BVR6   A0A0J7MY07   A0A0L7R7C3   A0A0J7KIY5   A0A0J7KJG6   A0A0J7KJH4   A0A0J7JZ13   A0A0J7KS67   A0A0J7JZF7   A0A0J7KM81   A0A0J7KLT9   A0A3L8DDV9   A0A0J7N7S8   A0A0J7KQK3   A0A3L8DIL1   A0A3L8D2G3   A0A0J7KYD2   A0A0J7KIM6   A0A0J7KIW1   A0A0J7KFG9   A0A0J7KPR0   A0A0J7JYP2   A0A2S2PJ67   A0A0J7K3R6   A0A0J7KL06   A0A0J7NEG9   A0A0J7KIY3   A0A0J7KC11   A0A0J7NMN5   A0A0J7KMU1   A0A0J7K3F1   A0A0J7KPZ3   A0A0J7KWU5   A0A0J7KRB8   A0A2S2P557   J9KNG8   A0A0J7KLH8   A0A0J7NAV8   A0A2S2PEU2   A0A0J7KGJ6   A0A2S2NPF9   A0A0J7K3R2   A0A0J7KP92   A0A0J7JXX4   A0A2S2PDK9   A0A0J7MX22   A0A0J7K6Z4   A0A2S2QW03   A0A2H8THF8   X1WSG8   A0A0J7KF40   A0A2S2P6S8   A0A2S2PSC1   J9KJG8   J9LAC1   A0A0J7N0R3   X1WXT5   A0A0J7MY17   A0A0J7KFH2   A0A0J7KMG5   X1WJY4   E2A7V5   J9LJ80   A0A2S2NME4   A0A0J7NFZ0   J9M4X0   A0A3Q0JIB3  

KEGG

100127037    K22984 odorant receptor | (RefSeq) Or-46, BmOr-46, Or46; olfactory receptor 46

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676  

Length:

337

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.47514

Exp number, first 60 AAs:

0.39879

Total prob of N-in:

0.06657

outside

1  -  337

 

 

Pi

137.06065

Theta

63.49258

Tajima's D

2.072195

CLR

0.015078

CSRT

0.889905504724764

Interpretation

Uncertain