Gene

KWMTBOMO16266

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr28(-):3276089-3277647      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.463 Mitochondrial   Reliability : 1.268 Nuclear   Reliability : 1.476

CDS

ATGAAACAGCGAAGGGAAACTGCAGATGCTGCTCCGTCAGATGGAAAAACTATAAACACTAAAATCAGAAAGCTGAGTAGGCGTGACCTTCGCCAATTCAACACAACAAAGATAAAAGAGGCAATAGAACAAAACAAAGGCACCAAAGTGTTTATACGGCAACAACAACTAGGCCGAAGCCATCTGACGAAGCTCAAAACTGCCGATGGAAGAATTGTTGACTCAAGATCAGAAGTCCTCACTGAAGTGGAGAGCTACTACTGTAGTCTCTATGCCTCACATGCTCCCAAACCCTTTGCCCACCCAGAGAATGATCACCGAGCCCCTTTAGTCCGCCACTATACGGAAGACATACCCGACGTCAGTATAGAGGAGATAAGGGCTGCTTTGGAACAGCTTAGAAAATATAACAGAGCTACAGGGGATGACGGACTCAGTACAGAATTGTTGAAAGCAAGTGGTACACCAGTTCTCAACCAATTATGTACAACGTTCAACACCGTCATCCAAAAAACGACTACACCGGAAGCCTGGAGCAAGGGTACTGTCATTCTTTTCTTTAAAAAGGGAGACCGTACTCTGCTCAAGAACTACAGGCCTATTTCACTTCTTAGCCATATTTATAAGCTGTTCTCGAGAGTCCTTACAAATCGCTTGGCCTCTAGACTTGACGAGTTCCAACCTCCGGAGCAGGCTGGGTTTCGCAAAGGCTACAGTACGGTAGACCACATCCACACGCTGAGACAGGTTATTCAGAAGACTGAAGAATACAATCGTCCTCTGTGTCTCGCGTTTGTGGACTACGAAAAAGCCTTCGACCCCGTCGAAACTTGGGCTGTTCTGGAATCCTTACAGCGATGTCTAGTCGATTATCGGTACGTTGAGGTGTTGAAGAGTTTATATAAAGCCGCCAAAATGACAGTTCAGATCCAAAACCAGCAGACAAACCCGATTGAGCTTCACAGAGGGGTGCGACAGGGTGACGTTATATCGCCGAAGCTGTTCACTGCTGCTCTCGAGGATGTCTTCAAGACTCTGGACTGGAGTAAGCTGGGCATCAATGTCAATGGCGAGTATCTTTCACACCTCCGATTTGCGTACGATATCGTTATAATGGCAGAGTCGCTAGAGGATCTCAGCTGTATGCTAGGTGAGCTCAATGCCGCGTCACGACGTGTTGGTCTGGGAATGAATCTGGACAAAATTAAGGTCATGTTCAACGACCATATCATTCCTGGACCGGTAATAGTCGAATCTGCGGTACTCGAAGTTGTGTCTGAATACACCTATCTAGGCCAAATTATTCAGCTGGGCAGGGCCAACTTTGAGAAGGAAGCTGATAGGCGCATACAGTTGGGCTGGGCTGCGTATGGAAAACTCCGTCACGTCTTGAACTCAGCAATCCCGCAATGCTTAAAGACAAAAGTTTTCAACGCTTGCGTGCTGCAGATCATGACATTTGGCGCTGAAACGTGGACATTGCCGTAG

Protein

MKQRRETADAAPSDGKTINTKIRKLSRRDLRQFNTTKIKEAIEQNKGTKVFIRQQQLGRSHLTKLKTADGRIVDSRSEVLTEVESYYCSLYASHAPKPFAHPENDHRAPLVRHYTEDIPDVSIEEIRAALEQLRKYNRATGDDGLSTELLKASGTPVLNQLCTTFNTVIQKTTTPEAWSKGTVILFFKKGDRTLLKNYRPISLLSHIYKLFSRVLTNRLASRLDEFQPPEQAGFRKGYSTVDHIHTLRQVIQKTEEYNRPLCLAFVDYEKAFDPVETWAVLESLQRCLVDYRYVEVLKSLYKAAKMTVQIQNQQTNPIELHRGVRQGDVISPKLFTAALEDVFKTLDWSKLGINVNGEYLSHLRFAYDIVIMAESLEDLSCMLGELNAASRRVGLGMNLDKIKVMFNDHIIPGPVIVESAVLEVVSEYTYLGQIIQLGRANFEKEADRRIQLGWAAYGKLRHVLNSAIPQCLKTKVFNACVLQIMTFGAETWTLP

Uniprot

D7F166   D7F157   A0A3S2KX72   D7F164   D7F159   D7F165   + More
D7F160   D7F158   A0A3S2TAR4   A4KWF2   A0A2G8JFM9   W4YXJ0   A0A2W1BLC9   A0A1E1XRS4   A0A2G8L2C7   A0A2G8K4F2   A0A2W1BDX2   A0A0N5C0B1   A0A1S3HCU5   A0A2H1VS24   A0A0K0FAW8   A0A2W1B5F8   A0A016S403   D7F177   A0A016U784   A0A2W1BZV1   D7F179   A0A069DX96   A0A016VV56   D7F176   A0A016UWI5   A0A016UTS3   A0A016RYK0   A0A023EWU8   A0A016V7H3   A0A016RXU5   A0A016WPY4   A0A2W1BCS2   A0A016WCB8   A0A016T8K4   A0A016ULU9   A0A016S1D2   A0A3P9LQX3   A0A0P4VWD0   A0A016TIA8   A0A016VBB9   A0A016VGM4   A0A016VN75   A0A016VRX3   A0A016TH80   A0A016SSP6   A0A016UUF2   A0A016T590   A0A016UGM6   A0A016TXK2   A0A016SGC3   A0A016VMK8   A0A016SX67   A0A016WKQ8   A0A016THC6   A0A016S5A1   A0A016VEC1   A0A016WEQ1   A0A016VCD9   A0A016VX03   A0A016WKT9   A0A016WVQ3   A0A016UEM0   A0A016TIG5   A0A016T5Z1   A0A016VCU3   A0A016UY78   A0A016T636   A0A016VBP7   A0A016VPL5   A0A016VVN3   A0A016WA79   A0A016US53   A0A016S795   A0A016SPR9   A0A016W5S4   A0A016TQJ1   A0A016VW83   A0A016S208   A0A016W1X2   A0A016WUN2   A0A016WRX9   A0A016X207   A0A016SCL7   A0A016VLP0  

Pubmed

20470440    17360547    29023486    28756777    29209593    25730766    + More
26334808    25474469    17554307    27129103   

EMBL

FJ265551    ADI61819.1    FJ265542    ADI61810.1    RSAL01002130    RVE40575.1    + More
FJ265549    ADI61817.1    FJ265544    ADI61812.1    FJ265550    ADI61818.1    FJ265545    ADI61813.1    FJ265543    ADI61811.1    RSAL01002362    RVE40503.1    EF113398    EF113401    ABO45231.1    MRZV01002136    PIK34564.1    AAGJ04050748    KZ149985    PZC75698.1    GFAA01001426    JAU02009.1    MRZV01000249    PIK54411.1    MRZV01000899    PIK42833.1    KZ150108    PZC73382.1    ODYU01004088    SOQ43598.1    KZ150317    PZC71439.1    JARK01001639    EYB85201.1    FJ265562    ADI61830.1    JARK01001389    EYC11015.1    KZ149907    PZC78256.1    FJ265564    ADI61832.1    GBGD01000453    JAC88436.1    JARK01001340    EYC31295.1    FJ265561    ADI61829.1    JARK01001362    EYC18843.1    EYC18844.1    JARK01001677    EYB83167.1    GBBI01004877    JAC13835.1    JARK01001351    EYC23395.1    EYB83168.1    JARK01000173    EYC41342.1    KZ150485    PZC70710.1    JARK01000388    EYC37469.1    JARK01001462    EYB98997.1    JARK01001370    EYC16150.1    JARK01001655    EYB84321.1    GDKW01001596    JAI54999.1    JARK01001434    EYC02684.1    JARK01001349    EYC24735.1    JARK01001346    EYC26784.1    JARK01001344    EYC28218.1    JARK01001341    EYC29807.1    JARK01001438    EYC02012.1    JARK01001517    EYB93530.1    JARK01001361    EYC19034.1    JARK01001473    EYB97806.1    JARK01001378    EYC13977.1    JARK01001406    EYC07496.1    JARK01001568    EYB89432.1    JARK01001343    EYC28635.1    JARK01001500    EYB95040.1    EYC28825.1    JARK01000224    EYC40225.1    EYC02111.1    JARK01001630    EYB85641.1    JARK01001348    EYC25048.1    JARK01000347    EYC38051.1    EYC25050.1    EYC31303.1    JARK01000248    EYC39628.1    JARK01000077    EYC43894.1    JARK01001380    EYC13322.1    JARK01001435    EYC02496.1    JARK01001470    JARK01000204    EYB98082.1    EYC40602.1    EYC25046.1    JARK01001359    EYC20105.1    EYB98081.1    EYC40601.1    EYC25049.1    JARK01001342    EYC29360.1    EYC30828.1    JARK01000460    EYC36749.1    JARK01001365    EYC18010.1    JARK01001621    EYB86109.1    JARK01001531    EYB92324.1    JARK01000802    EYC34990.1    JARK01001421    EYC04912.1    EYC31302.1    JARK01001648    EYB84653.1    JARK01001338    EYC33297.1    JARK01000109    EYC42952.1    JARK01000132    EYC42415.1    JARK01000008    EYC46079.1    JARK01001628    JARK01001583    JARK01001528    JARK01001506    JARK01001467    JARK01001463    JARK01001457    JARK01001432    JARK01001420    JARK01001403    JARK01001371    JARK01001369    JARK01001360    JARK01001353    JARK01000603    JARK01000080    EYB85741.1    EYB88438.1    EYB92544.1    EYB94540.1    EYB98080.1    EYB98468.1    EYB98899.1    EYB99568.1    EYC03088.1    EYC05014.1    EYC08153.1    EYC15852.1    EYC16408.1    EYC19456.1    EYC22445.1    EYC24734.1    EYC24778.1    EYC24866.1    EYC33488.1    EYC35672.1    EYC43798.1    EYC28216.1   

Proteomes

UP000283053    UP000230750    UP000007110    UP000046392    UP000085678    UP000035680    + More
UP000024635    UP000265180   

PRIDE

D7F166    D7F157    D7F164    D7F159    D7F165    D7F160    + More
D7F158    D7F177    D7F179    D7F176   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01826   TIL

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036084   Ser_inhib-like_sf       
IPR002919   TIL_dom       
IPR016186   C-type_lectin-like/link_sf       
IPR016187   CTDL_fold       
IPR029052   Metallo-depent_PP-like       

SUPFAM

SSF56219   SSF56219        + More
SSF57567   SSF57567       
SSF56436   SSF56436       

Gene 3D

3.60.10.10     3.10.100.10     3.60.21.10    

ProteinModelPortal

D7F166   D7F157   A0A3S2KX72   D7F164   D7F159   D7F165   + More
D7F160   D7F158   A0A3S2TAR4   A4KWF2   A0A2G8JFM9   W4YXJ0   A0A2W1BLC9   A0A1E1XRS4   A0A2G8L2C7   A0A2G8K4F2   A0A2W1BDX2   A0A0N5C0B1   A0A1S3HCU5   A0A2H1VS24   A0A0K0FAW8   A0A2W1B5F8   A0A016S403   D7F177   A0A016U784   A0A2W1BZV1   D7F179   A0A069DX96   A0A016VV56   D7F176   A0A016UWI5   A0A016UTS3   A0A016RYK0   A0A023EWU8   A0A016V7H3   A0A016RXU5   A0A016WPY4   A0A2W1BCS2   A0A016WCB8   A0A016T8K4   A0A016ULU9   A0A016S1D2   A0A3P9LQX3   A0A0P4VWD0   A0A016TIA8   A0A016VBB9   A0A016VGM4   A0A016VN75   A0A016VRX3   A0A016TH80   A0A016SSP6   A0A016UUF2   A0A016T590   A0A016UGM6   A0A016TXK2   A0A016SGC3   A0A016VMK8   A0A016SX67   A0A016WKQ8   A0A016THC6   A0A016S5A1   A0A016VEC1   A0A016WEQ1   A0A016VCD9   A0A016VX03   A0A016WKT9   A0A016WVQ3   A0A016UEM0   A0A016TIG5   A0A016T5Z1   A0A016VCU3   A0A016UY78   A0A016T636   A0A016VBP7   A0A016VPL5   A0A016VVN3   A0A016WA79   A0A016US53   A0A016S795   A0A016SPR9   A0A016W5S4   A0A016TQJ1   A0A016VW83   A0A016S208   A0A016W1X2   A0A016WUN2   A0A016WRX9   A0A016X207   A0A016SCL7   A0A016VLP0  

PDB

6AR3     E-value=0.016205,     Score=91

KEGG

101737796    no KO assigned | (RefSeq) craniofacial development protein 2-like

GO

GO:0003964   GO:0004519  

Length:

495

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04896

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02236

outside

1  -  495

 

 

Pi

315.198932

Theta

212.017884

Tajima's D

1.519094

CLR

0.01602

CSRT

0.794160291985401

Interpretation

Uncertain