Gene

KWMTBOMO16263

Annotation

hypothetical_protein_RF55_15411_[Lasius_niger]

Location

Bomo_Chr28(+):3237808-3238712      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.728

CDS

ATGTTATCGTGTTTTTTTTCAGGATTTTTCCAATTTAATGAGCAACGTGTCAGGCAACTTGTCAGTGATGTTGAGTTGGGTGACCGCCGTCCTTCGCAGTTTTTACGTTATCTTAGATCATTGGCAGGAAAAACCCTCACTGATGAAAATTTGCTTCGCCAGCTATGGATGCGTCGCCTCCCACAACATCTCCAAGCAATTTTGGCCGCCCAATCAGAACTCTCGCTGGACAAAGTCGCTGAGCTAGCGGACAAAATTTTGGAAGTTTCGCCTGGTATGGTCGCACCTCATTCATCTGCTGTTTTCTCAGCAAGTACGTCTGCCGTCTCAACCCCTTCGTTAGAAGATATCACACGGCGTCTGGATGAGGTCACGCGTCAGCTTGCTGTGCTTACTGCAGAGCGCGGTAGAAATAGGACCCGGGATTTCTCAAACCAGCGACGACGCTCACAAACGCCTGGTAAGCTTCAAATGTGCTTTTACCATAGGAAATTTAATACTAAAGCTGTTAAGTGTATTCAACCATGTACCTGGACGCCGCCGCCATCTTCGGAAAACGACAAAAGCAGTCAATGA

Protein

MLSCFFSGFFQFNEQRVRQLVSDVELGDRRPSQFLRYLRSLAGKTLTDENLLRQLWMRRLPQHLQAILAAQSELSLDKVAELADKILEVSPGMVAPHSSAVFSASTSAVSTPSLEDITRRLDEVTRQLAVLTAERGRNRTRDFSNQRRRSQTPGKLQMCFYHRKFNTKAVKCIQPCTWTPPPSSENDKSSQ

Uniprot

A0A1E1W1E7   A0A0J7K6I6   A0A0J7K6V3   A0A085NBV3   A0A151JCH0   A0A151ITG2   + More
A0A0J7K7T5   A0A151IZ47   T1IE13   A0A151J3U8   A0A0L7QJB5   A0A1Y1MA44   A0A1W4XBP5   A0A085LTM6   A0A0J7K6Y3   A0A085N4U2   A0A2L2Z3N6   A0A154P674   A0A026VRX8   A0A0L7QK36   A0A1E1X2S5   E2B0A9   A0A0J7KD10   A0A0J7K6V1   A0A1Y1MXV9   A0A151IRN4   A0A0J7JWP5   A0A154PA69   A0A2A4K2H4   T1I831   A0A2J7PYD5   A0A2H1WXE7   A0A094ZSI3   A0A0L7QJ97   A0A151JF00   C7C1Z8   A0A2G8L3A3   A0A151K1K5   A0A0L0ULM5   A0A3P7ZWB0   G4M0C7   A0A0J7NAK0   A0A183NPV5   A0A183NQG5   A0A0J7K0A7   A0A2J7RQK2   G4LW71   A0A3L8DMT5   A0A2A4JHF4   A0A095A584   A0A224XWW2   A0A131YTY1   C4QHY4   A0A0K8SFH9   A0A154PMS5   A0A151K0A8   D6WTN9   G4LWP6   A0A1W4X916   G4VT83   G4LVX0   G4VLV9   T1HU96   A0A2J7QTC8   A0A2J7PLR6   A0A2A4J8M7   G4VSL1   A0A139W8G7   A0A0L7LFW5   G4VH89   D7GYF3   G4VI25   G4VMA7   D7EJX5   G4M134   A0A0K8SV59   A0A131YM78   A0A0P8Y533   G4VRT0   A0A139WA14   A0A131Z7F2   G4V794   A0A3Q0KTC5   G4V682   A0A3Q0KKC0   A0A095C1W4   G4VET2   G4V8M5   G4VR49   C4Q8R4   A0A026WEP3   A0A183B8I5   C1M100   C1M2Q9   A0A0L7QJ51   G4LZM4   G4VLM4   C1M2I0  

Pubmed

24929829    28004739    26561354    24508170    28503490    20798317    + More
22246508    29023486    22253936    30249741    26830274    18362917    19820115    26227816    17994087   

EMBL

GDQN01010239    JAT80815.1    LBMM01013103    KMQ85816.1    LBMM01012479    KMQ86203.1    + More
KL367519    KFD66949.1    KQ979048    KYN23218.1    KQ981018    KYN10257.1    LBMM01012075    KMQ86422.1    KQ980726    KYN14011.1    ACPB03037918    KQ980247    KYN17109.1    LHQN01021927    LHQN01025379    KOC58628.1    KOC58659.1    GEZM01036621    JAV82564.1    KL363297    KFD48322.1    LBMM01012610    KMQ86112.1    KL367555    KFD64488.1    IAAA01082076    LAA14320.1    KQ434816    KZC06854.1    KK111495    EZA46390.1    KQ414987    KOC58988.1    GFAC01005832    JAT93356.1    GL444488    EFN60880.1    LBMM01009142    KMQ88358.1    LBMM01012923    LBMM01012917    KMQ85926.1    KMQ85930.1    GEZM01017686    JAV90494.1    KQ981124    KYN09337.1    LBMM01026224    KMQ82336.1    KQ434840    KZC08080.1    NWSH01000267    PCG77880.1    ACPB03012735    NEVH01020366    PNF21359.1    ODYU01011787    SOQ57731.1    KL250741    KGB36059.1    KQ415240    KOC58703.1    KQ979024    KYN24351.1    FN356212    CAX83700.1    MRZV01001127    MRZV01000236    PIK40395.1    PIK54731.1    LKEX01008659    KYN50015.1    AJIL01003693    KNE87923.1    UZAL01011781    VDP05747.1    CABG01000076    CCD60595.1    LBMM01007548    KMQ89630.1    UZAL01010187    VDP03243.1    LBMM01018089    KMQ83878.1    NEVH01000707    PNF43124.1    CABG01000023    CCD59159.1    QOIP01000006    RLU21744.1    NWSH01001575    PCG70822.1    KL252356    KGB42042.1    GFTR01003955    JAW12471.1    GEDV01006140    JAP82417.1    CABG01000346    CAZ35068.1    GBRD01013927    JAG51899.1    KQ434992    KZC13185.1    KQ981301    KYN43041.1    KQ971355    EFA07205.2    CABG01000031    CCD59329.1    HE601631    CCD83017.1    CABG01000020    CCD59058.1    HE601629    CCD80464.1    ACPB03016217    NEVH01011195    PNF31836.1    NEVH01024424    PNF17276.1    NWSH01002598    PCG67884.1    CCD81852.1    KQ973343    KXZ75568.1    JTDY01001300    KOB74269.1    HE601627    CCD79752.1    GG695519    EFA13383.1    CCD79076.1    CCD80612.1    KQ971759    EFA12902.2    CABG01000094    CCD60852.1    GBRD01008790    JAG57031.1    GEDV01008183    JAP80374.1    CH905996    KPU81830.1    CCD82772.1    KQ971745    KYB24749.1    GEDV01001795    JAP86762.1    HE601624    CCD74881.1    CCD74711.1    KL250698    KGB35593.1    HE601626    CCD78440.1    CCD75122.1    CCD81588.1    HE601625    CCD77013.1    CCD77288.1    CCD80388.1    CCD80486.1    CCD81882.1    KK107241    EZA54570.1    UZAN01060843    VDP92792.1    HE601630    CCD75315.1    CCD80887.1    CCD75326.1    CCD79184.1    CCD79457.1    LHQN01026442    KQ414593    KOC58672.1    KOC70162.1    CABG01000063    CCD60342.1    CCD80379.1    CABG01000118    CAY18932.2   

Proteomes

UP000036403    UP000078492    UP000015103    UP000053825    UP000192223    UP000076502    + More
UP000053097    UP000000311    UP000218220    UP000235965    UP000230750    UP000078542    UP000054564    UP000008854    UP000050791    UP000279307    UP000078541    UP000007266    UP000037510    UP000007801    UP000050740   

Pfam

PF00665   rve        + More
PF00078   RVT_1
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF17917   RT_RNaseH
PF10551   MULE

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR001969   Aspartic_peptidase_AS       
IPR001995   Peptidase_A2_cat       
IPR000477   RT_dom       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR041373   RT_RNaseH       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       

Gene 3D

2.40.70.10     3.30.420.10    

ProteinModelPortal

A0A1E1W1E7   A0A0J7K6I6   A0A0J7K6V3   A0A085NBV3   A0A151JCH0   A0A151ITG2   + More
A0A0J7K7T5   A0A151IZ47   T1IE13   A0A151J3U8   A0A0L7QJB5   A0A1Y1MA44   A0A1W4XBP5   A0A085LTM6   A0A0J7K6Y3   A0A085N4U2   A0A2L2Z3N6   A0A154P674   A0A026VRX8   A0A0L7QK36   A0A1E1X2S5   E2B0A9   A0A0J7KD10   A0A0J7K6V1   A0A1Y1MXV9   A0A151IRN4   A0A0J7JWP5   A0A154PA69   A0A2A4K2H4   T1I831   A0A2J7PYD5   A0A2H1WXE7   A0A094ZSI3   A0A0L7QJ97   A0A151JF00   C7C1Z8   A0A2G8L3A3   A0A151K1K5   A0A0L0ULM5   A0A3P7ZWB0   G4M0C7   A0A0J7NAK0   A0A183NPV5   A0A183NQG5   A0A0J7K0A7   A0A2J7RQK2   G4LW71   A0A3L8DMT5   A0A2A4JHF4   A0A095A584   A0A224XWW2   A0A131YTY1   C4QHY4   A0A0K8SFH9   A0A154PMS5   A0A151K0A8   D6WTN9   G4LWP6   A0A1W4X916   G4VT83   G4LVX0   G4VLV9   T1HU96   A0A2J7QTC8   A0A2J7PLR6   A0A2A4J8M7   G4VSL1   A0A139W8G7   A0A0L7LFW5   G4VH89   D7GYF3   G4VI25   G4VMA7   D7EJX5   G4M134   A0A0K8SV59   A0A131YM78   A0A0P8Y533   G4VRT0   A0A139WA14   A0A131Z7F2   G4V794   A0A3Q0KTC5   G4V682   A0A3Q0KKC0   A0A095C1W4   G4VET2   G4V8M5   G4VR49   C4Q8R4   A0A026WEP3   A0A183B8I5   C1M100   C1M2Q9   A0A0L7QJ51   G4LZM4   G4VLM4   C1M2I0  

KEGG

101745414    no KO assigned | (RefSeq) uncharacterized LOC101745414

GO

GO:0004190   GO:0003676   GO:0005634   GO:0015074  

Length:

191

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00081

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00543

outside

1  -  191

 

 

Pi

335.302981

Theta

176.121181

Tajima's D

2.863764

CLR

0

CSRT

0.972951352432378

Interpretation

Uncertain