Gene

KWMTBOMO16262  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013896

Annotation

PREDICTED:_exosome_complex_component_RRP41_[Papilio_xuthus]

Location

Bomo_Chr28(-):3233227-3237777      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.052 Nuclear   Reliability : 1.41

CDS

ATGCCCGCTGCCGATCTACTCTCGAGTCAAGGACTACGTCTTGACGGGCGGAGACCCAATGAATTACGTCGGATAAGATGTAAACTTGGTGTATTCACCCAGCCTGATGGAAGTGCGTATCTCGAACAAGGAAACACGAAAGTGCTTGCAGCCGTGTATGGACCCCATCAGGCTTCAAAATCGAAGATGTCGACAGAAGCTGTAGTTGTCAACTGCCAATACAGTATGGCTACATTCTCAACAGGTGAACGAAAGAACCGACCTCGCGGGGACCGCAAGTCACAAGAAATGTCAATGCATCTCCGACAAGCTCTAACTGCTGCTATTAAAACTGAAATGTATCCAAGGTCGCAAATAGATATATACATAGAAGTATTACAGGCCGATGGTGGTACGTATTGTGCCAGCGTGAATGCAGCCAGTCTAGCGCTGATAGACTCTGGTATACCTCTGAGAGCGTACGTGACCGCCTGCTCGGCGTCCCTGGGCCGACAAAGCGCCACCCACGAGCCCCTGGTGGACGTTAGTCACATCGAGGAAGCAGCCGATGGAGTATGTTTGACCGTAGCCAGCTTACCCAGCACAGGAAGCATAGCGCTATTGGAGATGTCAAATCGTCTCCACATGGACCATTTCAACATTGTATTGACCAGAGCTATGCAGGGCTGCAGAGATATAGAGGTGATCCTAGACGGAGCTGTGAGACAACATTTGGCAGAGGGATGGACGAAACAAGATGTAATAACGATATGA

Protein

MPAADLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSQIDIYIEVLQADGGTYCASVNAASLALIDSGIPLRAYVTACSASLGRQSATHEPLVDVSHIEEAADGVCLTVASLPSTGSIALLEMSNRLHMDHFNIVLTRAMQGCRDIEVILDGAVRQHLAEGWTKQDVITI

Uniprot

H9JWI2   A0A3S2TAM9   A0A194PYB8   A0A0N1IGQ5   S4PH72   A0A212FEQ2   + More
E3UKK3   A0A2H1VYM7   A0A084WI95   A0A182RSV1   A0A182JUN6   A0A182P1D7   A0A2M4AVY7   W5JF36   A0A1L8DXW6   A0A2M4BY24   A0A1L8DY10   A0A2M4AWI6   A0A182QI70   Q16KB4   A0A182FTW5   A0A1B6GLS2   A0A182SV71   A0A240PPA3   A0A182UM11   A0A182X082   A0A182KTB2   A0A182HPJ4   A0A1B0GJ79   A0A182N3P5   U5EUC0   A0A182UKK4   A0A1Q3FDZ5   B0XII7   A0A1B6E4S4   A0A067RMK4   A0A2J7QAU9   A0A2W1BEH0   A0A2A4K613   R4V247   A0A1B0D697   A0A0L0BZ80   W8C658   A0A034WXZ5   A0A0K8UE76   A0A1I8M9J4   A0A1I8NVL1   A0A1A9ZLN6   A0A1A9XYB9   A0A1B0ASZ1   D6WQQ6   Q29KH8   B4GS91   A0A336KLK6   A0A3B0JXD7   B3MN36   A0A1B0G254   B4JCT4   B4M9A1   A0A1A9UV02   A0A0M4ENV0   B4MX14   B4KHM2   A0A1W4UVH5   T1GXM9   B4P324   A0A1W4WVB6   B3NB10   E0VB94   V4B1W0   A0A0J9R1Q5   B4IEH2   N6TC01   Q9VK19   Q8SYC8   A0A182WD15   A0A182MI96   A0A1S3K722   A0A1Y1K1Y7   A0A0T6BF12   A0A210QQ73   A0A182YCA9   K1QXQ0   A0A0L8G583   A0A2C9K718   A0A1S3DCM5   A0A0P5FMP6   C3XU58   E9GVU2   A0A0P5W2I8   Q28H58   S4R7X0   A0A0P7WNA9   T1J870   Q5PQ94   A0A1W5AN85   A0A2H8TWF4   A0A2G8LQX2   A0A0R4IV90   A0A3N0XTA5  

Pubmed

19121390    26354079    23622113    22118469    24438588    20920257    + More
23761445    17510324    12364791    20966253    24845553    28756777    26108605    24495485    25348373    25315136    18362917    19820115    15632085    17994087    17550304    20566863    23254933    22936249    23537049    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    28004739    28812685    25244985    22992520    15562597    18563158    21292972    27762356    29023486    23594743   

EMBL

BABH01018608    RSAL01002724    RVE40432.1    KQ459588    KPI97744.1    KQ460417    + More
KPJ14872.1    GAIX01003372    JAA89188.1    AGBW02008913    OWR52193.1    HM449877    ADO33012.1    ODYU01005090    SOQ45622.1    ATLV01023923    KE525347    KFB49939.1    GGFK01011636    MBW44957.1    ADMH02001378    ETN62706.1    GFDF01002828    JAV11256.1    GGFJ01008771    MBW57912.1    GFDF01002802    JAV11282.1    GGFK01011637    MBW44958.1    AXCN02001102    CH477969    CH477928    EAT34742.1    EAT34991.1    GECZ01006367    JAS63402.1    AAAB01008986    APCN01003261    AJWK01019500    GANO01002392    JAB57479.1    GFDL01009323    JAV25722.1    DS233313    EDS29386.1    GEDC01004377    JAS32921.1    KK852423    KDR24253.1    NEVH01016325    PNF25704.1    KZ150355    PZC71240.1    NWSH01000142    PCG79112.1    KC740968    AGM32792.1    AJVK01025850    JRES01001125    KNC25330.1    GAMC01004464    JAC02092.1    GAKP01000294    JAC58658.1    GDHF01027365    JAI24949.1    JXJN01003038    KQ971354    EFA06999.1    CH379061    EAL33197.1    CH479189    EDW25638.1    UFQS01000581    UFQT01000581    SSX05111.1    SSX25472.1    OUUW01000010    SPP85733.1    CH902620    EDV32014.1    CCAG010016298    CH916368    EDW03173.1    CH940654    EDW57777.1    CP012523    ALC38400.1    CH963857    EDW76653.1    CH933807    EDW12301.1    CAQQ02385003    CM000157    EDW88266.1    KRJ97678.1    CH954177    EDV58724.1    DS235023    EEB10650.1    KB203969    ESO82254.1    CM002910    KMY90046.1    CH480831    EDW45999.1    APGK01036052    KB740932    KB632408    ENN77829.1    ERL95120.1    AE014134    BT044317    AAF53263.1    ACH92382.1    AGB92972.1    AY071632    AAL49254.1    AXCM01003529    GEZM01100624    JAV52837.1    LJIG01001048    KRT85892.1    NEDP02002420    OWF50875.1    JH816636    EKC35934.1    KQ423797    KOF72181.1    GDIQ01260638    GDIP01075571    LRGB01001475    JAJ91086.1    JAM28144.1    KZS11889.1    GG666464    EEN68432.1    GL732569    EFX76389.1    GDIP01091962    JAM11753.1    BC080330    CR761034    AAH80330.1    CAJ82158.1    JARO02008563    KPP62568.1    JH431948    BC087307    CM004477    AAH87307.1    OCT75097.1    GFXV01006818    MBW18623.1    MRZV01000008    PIK62622.1    FP245444    RJVU01061481    ROJ35261.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000053240    UP000007151    UP000030765    + More
UP000075900    UP000075881    UP000075885    UP000000673    UP000075886    UP000008820    UP000069272    UP000075901    UP000075903    UP000076407    UP000075882    UP000075840    UP000092461    UP000075884    UP000075902    UP000002320    UP000027135    UP000235965    UP000218220    UP000092462    UP000037069    UP000095301    UP000095300    UP000092445    UP000092443    UP000092460    UP000007266    UP000001819    UP000008744    UP000268350    UP000007801    UP000092444    UP000001070    UP000008792    UP000078200    UP000092553    UP000007798    UP000009192    UP000192221    UP000015102    UP000002282    UP000192223    UP000008711    UP000009046    UP000030746    UP000001292    UP000019118    UP000030742    UP000000803    UP000075920    UP000075883    UP000085678    UP000242188    UP000076408    UP000005408    UP000053454    UP000076420    UP000079169    UP000076858    UP000001554    UP000000305    UP000245300    UP000034805    UP000186698    UP000192224    UP000230750    UP000000437   

PRIDE

H9JWI2    Q9VK19    Q8SYC8   

Pfam

PF01138   RNase_PH        + More
PF03725   RNase_PH_C
PF05047   L51_S25_CI-B8

Interpro

IPR027408   PNPase/RNase_PH_dom_sf        + More
IPR001247   ExoRNase_PH_dom1       
IPR036345   ExoRNase_PH_dom2_sf       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR015847   ExoRNase_PH_dom2       
IPR007741   Ribosome/NADH_DH       
IPR036249   Thioredoxin-like_sf       

SUPFAM

SSF55666   SSF55666        + More
SSF54211   SSF54211       
SSF52833   SSF52833       

Gene 3D

3.30.230.70    

ProteinModelPortal

H9JWI2   A0A3S2TAM9   A0A194PYB8   A0A0N1IGQ5   S4PH72   A0A212FEQ2   + More
E3UKK3   A0A2H1VYM7   A0A084WI95   A0A182RSV1   A0A182JUN6   A0A182P1D7   A0A2M4AVY7   W5JF36   A0A1L8DXW6   A0A2M4BY24   A0A1L8DY10   A0A2M4AWI6   A0A182QI70   Q16KB4   A0A182FTW5   A0A1B6GLS2   A0A182SV71   A0A240PPA3   A0A182UM11   A0A182X082   A0A182KTB2   A0A182HPJ4   A0A1B0GJ79   A0A182N3P5   U5EUC0   A0A182UKK4   A0A1Q3FDZ5   B0XII7   A0A1B6E4S4   A0A067RMK4   A0A2J7QAU9   A0A2W1BEH0   A0A2A4K613   R4V247   A0A1B0D697   A0A0L0BZ80   W8C658   A0A034WXZ5   A0A0K8UE76   A0A1I8M9J4   A0A1I8NVL1   A0A1A9ZLN6   A0A1A9XYB9   A0A1B0ASZ1   D6WQQ6   Q29KH8   B4GS91   A0A336KLK6   A0A3B0JXD7   B3MN36   A0A1B0G254   B4JCT4   B4M9A1   A0A1A9UV02   A0A0M4ENV0   B4MX14   B4KHM2   A0A1W4UVH5   T1GXM9   B4P324   A0A1W4WVB6   B3NB10   E0VB94   V4B1W0   A0A0J9R1Q5   B4IEH2   N6TC01   Q9VK19   Q8SYC8   A0A182WD15   A0A182MI96   A0A1S3K722   A0A1Y1K1Y7   A0A0T6BF12   A0A210QQ73   A0A182YCA9   K1QXQ0   A0A0L8G583   A0A2C9K718   A0A1S3DCM5   A0A0P5FMP6   C3XU58   E9GVU2   A0A0P5W2I8   Q28H58   S4R7X0   A0A0P7WNA9   T1J870   Q5PQ94   A0A1W5AN85   A0A2H8TWF4   A0A2G8LQX2   A0A0R4IV90   A0A3N0XTA5  

PDB

6H25     E-value=3.03961e-72,     Score=688

KEGG

101736954    K11600 exosome complex component RRP41 | (RefSeq) exosome complex component RRP41

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0004527   GO:0000177   GO:0034475   GO:0005730   GO:0071051   GO:0016075   GO:0000176   GO:0071028   GO:0034427   GO:0005737   GO:0035327   GO:0005652   GO:0010468   GO:0051607   GO:0000178  

Length:

250

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01447

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01443

outside

1  -  250

 

 

Pi

208.79238

Theta

153.381615

Tajima's D

1.173234

CLR

0

CSRT

0.707264636768162

Interpretation

Uncertain