SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16260
Pre Gene Modal
BGIBMGA013897
Annotation
PREDICTED:_nef-associated_protein_1_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 2.764
 

Sequence

CDS
ATGGCCGATCATTCTGAATATTATAAGAATCAAATAGCTTTAGCTCGTACAGAAATAAAAAATCTCAGGCAACAATTGACGTCTCTGAAGCACGAACACCAGAAGGAGATAAAACTAATTAAAGCAGCTCTTAACAGTCTCCGTTGTTCCGACTGTGCTGAAGCCGCCACAACAGCTTTGGTTAATAATGTAGAGGCAGAACGGTCTGATGATGACATACATTATCAGCCTATTGGATCAATAGAAACATCATTTCAAAACAAACGAGGTGTTCCTCGGCAACCTTCTGTTATGAAGAATGCAAGGGGAACTGTGGTAATTGATACTTCAGTATTTAATAACCCTGAGCATGCTTTGAGCGGACTAGAGGAGTTTTCACATATGTGGATAATATTCCACTTCCACATGACAGAAAGTACAAATGCACCAGCTAAAGTTGCCCCACCAAGATTGTGTGGAGGAAGGCAAGGTGTATTCTCCACGCGTTCACCCCACAGACCTTGTCCGATTGGGTTGTCACTTGTGAAGATTCATTCTATTGAAGGTAACAAAATACACTTTTTGGGCGTTGACATGGTTAATGGCACACCCGTTCTGGACATAAAACCTTATATTCCACAATACGACTACCCATATGAAGCAACAAGCTCTGTTCGACCACGGACAGAGGGAATAAGCAATGTGGTCGATGACATGGTGAATGTTAATATTGGTGACCATAGGTTAGACATTGGAAGTTCCAGAATTGCGACACCAATCGATATCGATTCTCCTTGTAGAAGTCCATTTGAAGATATACCTTCACCAGAGTCAAGACTCAGCAACATGCAAGCCCCACTATCAGAATTTCCGGACTCCCCATCTGGTGTCGACCACGTTGATGGGAATCCAAGGTCGCCTTTACGTAGGCCGGATGCTGAACGCGGAGATCCGGATGGTCAAGAAAGGTTCACTCCACCGCAGTCGGCAAATCAAAGTATAAGGCACGACGGCATAAGAGTGGCCGCGTGGATAAACAACCCTGCTTCACAGAGATACGACGTTAGATTCACTGATGATGCACTGGCCCGTCTTCATGACTTAATTGGGGATAGAGCGGATGCCTTCAAAAGTAACATTGAAAGTCTTTTGTCTGAAGATCCAAGGTCGAATTACGTCAGAGGCAGGTATCCGGATCACGAATACAGTTGTGTGTTAGAAGACCTGTCTATTAGCTGCGTTTTCGATAGAAATTCGCATGTTTGTAATATAATCGCTGTGAGAAATGCCGAAGAACTTCAGGAAAATTAA
Protein
MADHSEYYKNQIALARTEIKNLRQQLTSLKHEHQKEIKLIKAALNSLRCSDCAEAATTALVNNVEAERSDDDIHYQPIGSIETSFQNKRGVPRQPSVMKNARGTVVIDTSVFNNPEHALSGLEEFSHMWIIFHFHMTESTNAPAKVAPPRLCGGRQGVFSTRSPHRPCPIGLSLVKIHSIEGNKIHFLGVDMVNGTPVLDIKPYIPQYDYPYEATSSVRPRTEGISNVVDDMVNVNIGDHRLDIGSSRIATPIDIDSPCRSPFEDIPSPESRLSNMQAPLSEFPDSPSGVDHVDGNPRSPLRRPDAERGDPDGQERFTPPQSANQSIRHDGIRVAAWINNPASQRYDVRFTDDALARLHDLIGDRADAFKSNIESLLSEDPRSNYVRGRYPDHEYSCVLEDLSISCVFDRNSHVCNIIAVRNAEELQEN

Summary

EMBL
BABH01018608    ODYU01004100    SOQ43621.1    RSAL01000025    RVE52160.1    KZ150476    + More
PZC70743.1    NWSH01001212    PCG72107.1    KQ459588    KPI97743.1    KQ460417    KPJ14870.1    AGBW02008912    OWR52196.1    GAIX01005613    JAA86947.1    JTDY01004487    KOB68088.1    NEVH01006994    PNF36103.1    GEDC01016322    JAS20976.1    KK852527    KDR22023.1    GEBQ01030590    JAT09387.1    KQ414695    KOC63533.1    KK107111    EZA58910.1    GECU01012750    JAS94956.1    GECZ01020987    JAS48782.1    GEZM01001264    JAV98010.1    LJIG01002096    KRT84844.1    KQ981636    KYN38895.1    KQ435833    KOX71645.1    GBYB01009149    JAG78916.1    GBHO01019405    GDHC01017243    JAG24199.1    JAQ01386.1    CH916367    EDW01187.1    GAMC01003191    JAC03365.1    CH954177    KQS70915.1    CM002911    KMY92111.1    EDV59623.1    AY122124    BT001584    AE013599    AAM52636.1    AAN71339.1    AAS64896.1    CH480816    EDW46829.1    CM000157    EDW89247.1    KMY92112.1    AAF59182.1    CM000071    KRT02802.1    KRT02803.1    GBGD01001806    JAC87083.1    KRJ98325.1    GFTR01005687    JAW10739.1    GAKP01009713    GAKP01009712    JAC49240.1    GDHF01032412    JAI19902.1    GBBI01003488    JAC15224.1    GBRD01012313    JAG53511.1    GDKW01000198    JAI56397.1    GCES01028054    JAR58269.1    RJVU01049346    ROL42736.1    BX005000   
Pfam
PF01980   TrmO        + More
PF18389   TrmO_C
PF00078   RVT_1
PF03987   Autophagy_act_C
Interpro
IPR036413   YaeB-like_sf        + More
IPR023370   TrmO-like_N       
IPR040372   YaeB-like       
IPR036414   YaeB_N_sf       
IPR041369   TrmO_C       
IPR000477   RT_dom       
IPR007135   Autophagy-rel_prot_3       
SUPFAM
SSF118196   SSF118196       
Gene 3D
PDB
1XQB     E-value=1.34653e-24,     Score=280

Ontologies

Topology

Length:
429
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00038
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01843
outside
1  -  429
 
 

Population Genetic Test Statistics

Pi
149.543188
Theta
136.930036
Tajima's D
-0.168053
CLR
0.799119
CSRT
0.323883805809709
Interpretation
Uncertain
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