Silkworm Genome Informatics Database

Gene

KWMTBOMO16254

Annotation

PREDICTED:_paired_box_pox-neuro_protein_[Bombyx_mori]

Location

Bomo_Chr28(-):2988494-3013162 View in EpiBrowser

Transcription factor

PAX

Location in the cell

Nuclear Reliability : 3.654

CDS

ATGTCGACTGGAATATCTGTGTTACTTGGTGTTACTCTTCAAAGTCAAGCCGGGGTCAATCAGCTAGGGGGCGTTTTCGTAAACGGTCGTCCCCTCCCCGACGTGGTTCGCAAGAGGATTGTCGAGCTGGCCATCATGGGTGTCAGGCCTTGCGACATCAGCAGACAGTTGCTCGTGTCCCACGGATGCGTCTCCAAGATCCTGACGAGGTTTTACGAGACCGGCTCGATTCGGCCCGGTTCAATCGGCGGAAGCAAGACTAAGCAAGTGGCAACTCCGACTGTGGTCAAGAAGATACTCCGATTAAAACAAGAGAATCCAGGAATGTTTGCGTGGGAGATCAGAGAACGACTCCTCAGCGCTAGAGTGTGCGAACCACATTCCATACCGTCAGTATCTTCAGTGAACCGAATCCTTAGGAACAGCGGGCTGGCATGGAATGACGATGAAGGCAGAGGACACGAACCCTATGCACCGCCGGAACAGCCGCCAAATGTGCTAGACTACATGGCCCCAACGCTTCTACCGCAACAGAATCCCCCCTACCTGATCCACCCCGCAGTACGTGTGCCCCTACAGTCAACAGAACCCAGGATTTACGACAGACGACTCGCCACATCCTGGTTCCTGGCTAACCAAGTCCAGACCCAGGGACTGCTGAAGCCTTACCCGATATCGCCCTGGCAGCGTCTGGTTTCACCGTACGACAGCAAAGAATTCCCACCATACGCTTTGGCACTTCACAATGACCTGCTCAAAATGAATTCAGATGCTAAATCAGAAGACTCCGAGCATATATCGATTGACGCCAGCGATGATAGCACAGATAAGCCCGAACAAGAAGAGATCGAACCGAAAACGGTCGACGAAAGGGAGAAAAAGAAGAATCCATATTCAATAGAAGAACTATTGAAGAAGCCGAGCAAGATGAACGTGAAACCTTGTTTTCGTTTCCTGCCTCACTCGAGCAGCAGCGTTGCTGATATGCAGGAAAAGGACAGCAATAGAAGTTCACCAGCAAGCTTTTGCTCAATGCAAAGCGGCGTATCCAATGATTTCACGGAACCAATCAGTTCGGAAATAAAAGCGGGAAATTGA

Protein

MSTGISVLLGVTLQSQAGVNQLGGVFVNGRPLPDVVRKRIVELAIMGVRPCDISRQLLVSHGCVSKILTRFYETGSIRPGSIGGSKTKQVATPTVVKKILRLKQENPGMFAWEIRERLLSARVCEPHSIPSVSSVNRILRNSGLAWNDDEGRGHEPYAPPEQPPNVLDYMAPTLLPQQNPPYLIHPAVRVPLQSTEPRIYDRRLATSWFLANQVQTQGLLKPYPISPWQRLVSPYDSKEFPPYALALHNDLLKMNSDAKSEDSEHISIDASDDSTDKPEQEEIEPKTVDEREKKKNPYSIEELLKKPSKMNVKPCFRFLPHSSSSVADMQEKDSNRSSPASFCSMQSGVSNDFTEPISSEIKAGN

Uniprot

A0A3S2P4J5 A0A0N1INI9 A0A194PWN9 A0A212FFH4 A0A2A4J5V0 A0A2W1BCG3 + More
A0A2H1VSL5 A0A182TN64 A0A1J1II87 A0A182LK18 A0A139WF21 A0A1I8N2Y6

Pubmed

26354079 22118469 28756777 20966253 18362917 19820115 + More
25315136

EMBL

RSAL01000025 RVE52165.1 KQ461053 KPJ09931.1 KQ459588 KPI97737.1 + More
AGBW02008815 OWR52495.1 NWSH01002936 PCG67259.1 KZ150137 PZC72979.1 ODYU01004197 SOQ43810.1 CVRI01000054 CRK99912.1 KQ971354 KYB26546.1

Proteomes

UP000283053 UP000053240 UP000053268 UP000007151 UP000218220 UP000075902 + More
UP000183832 UP000075882 UP000007266 UP000095301

Pfam

PF00292   PAX        + More
PF02752   Arrestin_C
PF00339   Arrestin_N

Interpro

IPR001523   Paired_dom        + More
IPR009057   Homeobox-like_sf
IPR036388   WH-like_DNA-bd_sf
IPR011021   Arrestin-like_N
IPR014752   Arrestin_C
IPR014756   Ig_E-set
IPR011022   Arrestin_C-like

SUPFAM

SSF46689 SSF46689 + More
SSF81296 SSF81296

Gene 3D

1.10.10.10 2.60.40.640

CDD

cd00131 PAX

ProteinModelPortal

A0A3S2P4J5 A0A0N1INI9 A0A194PWN9 A0A212FFH4 A0A2A4J5V0 A0A2W1BCG3 + More
A0A2H1VSL5 A0A182TN64 A0A1J1II87 A0A182LK18 A0A139WF21 A0A1I8N2Y6

PDB

1MDM E-value=1.5213e-46, Score=469

KEGG

101741842 no KO assigned | (RefSeq) paired box pox-neuro protein

GO

GO:0003677 GO:0007275 GO:0005634 GO:0006355 GO:0005737 GO:0006168 GO:0006261 GO:0001678 GO:0005536 GO:0046835 GO:0006281 GO:0006259

Subcellular location

Nucleus

Length:

365

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.1122

Exp number, first 60 AAs:

0.1122

Total prob of N-in:

0.00695

outside

1 - 365

Pi

191.258243

Theta

145.616042

Tajima's D

1.141156

CLR

0.260355

CSRT

0.694165291735413

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics