Gene

KWMTBOMO16245

Pre Gene Modal

BGIBMGA012113

Annotation

PREDICTED:_uncharacterized_protein_LOC106720810_[Papilio_machaon]

Location

Bomo_Chr28(+):2869963-2871257      View in EpiBrowser

Full name

ATP-dependent DNA helicase      

Location in the cell

Cytoplasmic   Reliability : 1.197 Mitochondrial   Reliability : 1.142 Nuclear   Reliability : 1.494

CDS

ATGAGAGTGCAACTACACAATGATGTACAATCTGGACAATATGCTGCTGCTCTTCTTAAAATTGGAGAAGATCGTATGGCAAAGGATGGTAATGGCATGATTACATTGGATCGTGAATTCTGCAATGTTGTGCATAATCCAGATGATCTAAATAACTTCGTCTATAGCGAACTGCTAACTAATATGAGGAATAGAGACTGGTTATGTGAAAGAGCAATTTTAGCGCCGACGAATGAAATGGTGGGACAGATAAACGAGCAAATTATGTCACGCGTGGAAAGTGATATTGTTGAGTTTCTCTCTGTAGACACTGTAATGGATACTGAACAAGTAACATCATACCCTGTAGAATTTCTTAATTCTTTAGAACTGTCGGGAGTACCTTCACACAAACTGAGGCTGAAAGTAGGCGTTCCTGTCCTTTTAATGCGGAATTTAGATGCACCAAGACTGTGTAATGGCACACGGTTGCAAGTGACACACCTCGGTCGCAATATTGTAAAAGCAATCATTATGACTGGAATGGCAAAAGGAGAGAACGTTTTAATCCCCCGTATACCCATAATTCCGACAGATTTGCCATTCCAGTTTAAGAGATTACAGTTTCCGCTGAAAATCGCATTCGCTATGACGATAAATAAAGCTCAGGGGCAAACATTAAAAGTAGCCGGCATTAATTTAGAAAAGAGTTGTTTTTCTCACGGACAATTATACGTGGCTTGCTCACGTGTTTCAAGTCCACAGAATCTCCATGTGTTGGCCAGAGAGGGAAAAACAAAGAACATAGTTTACAAAAATGTACTACAGTAA

Protein

MRVQLHNDVQSGQYAAALLKIGEDRMAKDGNGMITLDREFCNVVHNPDDLNNFVYSELLTNMRNRDWLCERAILAPTNEMVGQINEQIMSRVESDIVEFLSVDTVMDTEQVTSYPVEFLNSLELSGVPSHKLRLKVGVPVLLMRNLDAPRLCNGTRLQVTHLGRNIVKAIIMTGMAKGENVLIPRIPIIPTDLPFQFKRLQFPLKIAFAMTINKAQGQTLKVAGINLEKSCFSHGQLYVACSRVSSPQNLHVLAREGKTKNIVYKNVLQ

Catalytic Activity

ATP + H2O = ADP + H(+) + phosphate

Cofactor

Mg(2+)

Similarity

Belongs to the helicase family.

Feature

chain  ATP-dependent DNA helicase

Uniprot

H9JRF3   H9IX39   A0A3S2NMC0   A0A0D6L9W9   A0A0C2FJV3   A0A0C2CAW5   + More
A0A1B6FAB1   A0A0C2DCH2   A0A368G849   A0A0C2HB61   A0A0C2CWG5   A0A0C2GYY1   X1XQ79   A0A034VN96   A0A0C2G2C8   A0A2S2NRV5   A0A368G200   A0A0C2DG77   A0A016W7D9   A0A0C2G6C2   J9M6P3   A0A0D6L4E4   A0A2S2NFE6   A0A0C2G6A8   A0A0C2FKB3   S4PSG3   A0A1L7NV02   J9KU39   F4ZH17   A0A034W206   A0A1B6EZE3   A0A0C2G509   J9M0J9   X1XPT9   A0A0L8HYC6   A0A1B6IR77   X1XKB2   A0A0L8II35   A0A267F5E2   A0A0L8H069   A0A1B6CHA4   A0A267GWL2   A0A0C2GWQ8   A0A0L8H120   A0A267F2R0   A0A267GEW9   A0A267GN76   A0A1S3DQH5   X1WMT0   A0A3S2NR36   A0A267F4D8   A0A1W4VF09   A0A182EMS8   J9M4E0   A0A3S2NIC2   A0A0J7KGC7   H9JGG9   A0A0L8FW00   A0A368FYS8   A0A0L8GFB9   A0A2C9JJ58   A0A0C2D1N2   J9LSB3   A0A1B6DWB8   A0A2G9FVM7   A0A3Q0J5L7   X1WT58   X1X1C7   X1WX02   A0A2J7RDQ6   X1WT47   X1WPL7   X1XSP2   A0A2M4BYH1   X1WQJ3   X1WQM7   J9M8H6   A0A3Q0JH32   J9L7H1   X1WPI6   A0A368FC95   A0A0C2FIX2   N6TT90   J9KDQ6   A0A0D6LGL1   A0A0L8HV41   J9M5Z2   X1X0I8   A0A368FH16   A0A293LUY1   A0A0A1XAS3  

EC Number

3.6.4.12

Pubmed

19121390    25348373    25730766    23622113    21470650    22919073    + More
15562597    29253216    23537049    25830018   

EMBL

BABH01016327    BABH01021294    BABH01021295    RSAL01000260    RVE43353.1    KE125416    + More
EPB68564.1    KN773623    KIH45171.1    KN768221    KIH46987.1    GECZ01022632    JAS47137.1    KN726652    KIH67553.1    JOJR01000352    RCN39175.1    KN726977    KIH66756.1    KN739487    KIH54222.1    KN727000    KIH66715.1    ABLF02006664    GAKP01015355    JAC43597.1    KN747262    KIH51216.1    GGMR01007248    MBY19867.1    JOJR01000395    RCN38503.1    KN730120    KIH61447.1    JARK01000714    EYC35207.1    KN743176    KIH52626.1    ABLF02004758    ABLF02010540    KE126587    EPB66060.1    GGMR01003219    MBY15838.1    KN739098    KIH54434.1    KN768033    KIH47189.1    GAIX01013838    JAA78722.1    LC056060    BAW33744.1    ABLF02030014    HQ009558    AEE09607.1    GAKP01009346    JAC49606.1    GECZ01026766    JAS43003.1    KN739955    KIH53984.1    ABLF02027436    ABLF02011512    ABLF02065998    KQ417009    KOF94238.1    GECU01024866    GECU01018275    GECU01015236    JAS82840.1    JAS89431.1    JAS92470.1    ABLF02041349    KQ415755    KOG00729.1    NIVC01001359    PAA68995.1    KQ419659    KOF82676.1    GEDC01024516    GEDC01006142    JAS12782.1    JAS31156.1    NIVC01000111    PAA90396.1    KN730017    KIH61566.1    KQ419625    KOF82809.1    NIVC01001486    PAA67379.1    NIVC01000366    PAA84583.1    NIVC01000229    PAA87485.1    ABLF02016601    ABLF02024213    ABLF02041347    RSAL01000338    RVE42429.1    NIVC01001445    PAA67902.1    UYRW01004572    VDM92857.1    ABLF02042290    RSAL01001639    RVE40746.1    LBMM01007929    KMQ89299.1    BABH01039432    KQ425876    KOF68891.1    JOJR01000539    RCN36628.1    KQ422072    KOF75554.1    KN736527    KIH55917.1    ABLF02024220    ABLF02041348    GEDC01007314    JAS29984.1    NKXS01013118    PIM96964.1    ABLF02039419    ABLF02041372    ABLF02063377    ABLF02041819    NEVH01005285    PNF38967.1    ABLF02033400    ABLF02016932    ABLF02023575    GGFJ01008921    MBW58062.1    ABLF02021501    ABLF02028709    ABLF02028715    ABLF02048760    ABLF02055417    ABLF02055419    ABLF02059664    ABLF02003694    ABLF02021131    ABLF02042289    ABLF02006222    JOJR01002614    RCN28445.1    KN775179    KIH44846.1    APGK01055334    KB741262    KB631831    ENN71556.1    ERL86591.1    ABLF02035713    KE125929    EPB66767.1    KQ417234    KOF93074.1    ABLF02033384    ABLF02026638    JOJR01001936    RCN29467.1    GFWV01012558    MAA37287.1    GBXI01006514    JAD07778.1   

Proteomes

UP000005204    UP000283053    UP000252519    UP000007819    UP000024635    UP000053454    + More
UP000215902    UP000079169    UP000192221    UP000077448    UP000271087    UP000036403    UP000076420    UP000231279    UP000235965    UP000019118    UP000030742   

PRIDE

H9JRF3    H9IX39    H9JGG9   

Pfam

PF05970   PIF1        + More
PF10262   Rdx
PF14214   Helitron_like_N
PF02689   Herpes_Helicase

Interpro

IPR010285   DNA_helicase_pif1-like        + More
IPR027417   P-loop_NTPase       
IPR011893   Selenoprotein_Rdx-typ       
IPR036249   Thioredoxin-like_sf       
IPR025476   Helitron_helicase-like       
IPR003840   DNA_helicase       
IPR038765   Papain-like_cys_pep_sf       
IPR003653   Peptidase_C48_C       

SUPFAM

SSF52540   SSF52540        + More
SSF52833   SSF52833       
SSF54001   SSF54001       

ProteinModelPortal

H9JRF3   H9IX39   A0A3S2NMC0   A0A0D6L9W9   A0A0C2FJV3   A0A0C2CAW5   + More
A0A1B6FAB1   A0A0C2DCH2   A0A368G849   A0A0C2HB61   A0A0C2CWG5   A0A0C2GYY1   X1XQ79   A0A034VN96   A0A0C2G2C8   A0A2S2NRV5   A0A368G200   A0A0C2DG77   A0A016W7D9   A0A0C2G6C2   J9M6P3   A0A0D6L4E4   A0A2S2NFE6   A0A0C2G6A8   A0A0C2FKB3   S4PSG3   A0A1L7NV02   J9KU39   F4ZH17   A0A034W206   A0A1B6EZE3   A0A0C2G509   J9M0J9   X1XPT9   A0A0L8HYC6   A0A1B6IR77   X1XKB2   A0A0L8II35   A0A267F5E2   A0A0L8H069   A0A1B6CHA4   A0A267GWL2   A0A0C2GWQ8   A0A0L8H120   A0A267F2R0   A0A267GEW9   A0A267GN76   A0A1S3DQH5   X1WMT0   A0A3S2NR36   A0A267F4D8   A0A1W4VF09   A0A182EMS8   J9M4E0   A0A3S2NIC2   A0A0J7KGC7   H9JGG9   A0A0L8FW00   A0A368FYS8   A0A0L8GFB9   A0A2C9JJ58   A0A0C2D1N2   J9LSB3   A0A1B6DWB8   A0A2G9FVM7   A0A3Q0J5L7   X1WT58   X1X1C7   X1WX02   A0A2J7RDQ6   X1WT47   X1WPL7   X1XSP2   A0A2M4BYH1   X1WQJ3   X1WQM7   J9M8H6   A0A3Q0JH32   J9L7H1   X1WPI6   A0A368FC95   A0A0C2FIX2   N6TT90   J9KDQ6   A0A0D6LGL1   A0A0L8HV41   J9M5Z2   X1X0I8   A0A368FH16   A0A293LUY1   A0A0A1XAS3  

PDB

6HPU     E-value=8.58275e-11,     Score=159

KEGG

101740342    K15255 ATP-dependent DNA helicase PIF1 [EC:3.6.4.12] | (RefSeq) ATP-dependent DNA helicase PIF6-like

GO

GO:0000723   GO:0006310   GO:0005524   GO:0006281   GO:0003678   GO:0004386   GO:0008234   GO:0005634   GO:0006261   GO:0001678   GO:0005536   GO:0046835   GO:0006259  

Length:

269

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01848

Exp number, first 60 AAs:

0

Total prob of N-in:

0.09803

outside

1  -  269

 

 

Pi

48.25524

Theta

50.360654

Tajima's D

0.323686

CLR

0

CSRT

0.455477226138693

Interpretation

Uncertain