SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16237
Pre Gene Modal
BGIBMGA013909
Annotation
PREDICTED:_uncharacterized_protein_LOC101735359_isoform_X2_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.523 Mitochondrial   Reliability : 1.323 Nuclear   Reliability : 1.304
 

Sequence

CDS
ATGGATTTAGCAAAATTATTAGAAGATCTTCCTTGGATAAAACTTGACTGGTGTTTTCCGAGCATGACCCAAGAGACCAATGAACTTATTCAGAAATGCACTGAAATACCTGAAATTGAACCAGACCCTGAAGTTGATGAAATTATTGAGAGAAGCAAGAATTTTCCTATACCTTTCCCGATTCAGACTGTGAGATTGGAGAAACTGAAGGAGCATCGTCCCATAGACAGATTAAAGAGGAATATTTCAGAGACATATCCTATTATACACGAGAGGGTCTTGTTGCTGATGGCACACTTTTTAATATATAAACGTGAACATGGCAGTAGTATAGAGAAAGAATTATACAGAGACATGACCATACCAGAGCTTATTGATCGATTATTACTGAAAAGAGCCGTATCGTTTATGGGAGCTCGCGATGCATATATGTTAATGAGTGGCAAGAAGGGCGTCGATGGTTGGGAGAACGTGGGGACCCCGGCGGAAACAGAGCCGCTGGTGTTGAAAGACGTGCTCAGCTACGATGAGATAAAGCTCTCTGCTTTTTTGTTCGTGAGCGGACCCACCGAGTGCATCAACAGTGGCTCCAGGAGGAACTGCGGCGTTCTAGACGACGATGACATCGAGAAGGAAGCCATTATCATAGGAGCCATAGGGCCGCGCTTCAAGCGGTTGAATCGAATGGACTACGAGGACATGGTGATATCGAAAACGCAGAACACTGCAGAGCGCGGCTACGGCGAGCACGAGGCGCCGACCAGGTGCATGGACGTACTGCGACACGCGTACACGCGCGACGCCAGCCTCGCCAAGCGCGCCTGGAGGCAGCTGTGGGCCGAGCTGTACCAGGTGCACAGCTACACGTACGAGGAGCTGAGCGCGCGGCTCGCGGGGGCGGCCTCGGACCGCTACGTGAAGCTGCCGCGGGGGGGCGCCTGGTTCGACAACGAGGTCTACTACAAGCGGATCTGCATCCTCGCGGAGACCGTGCTGCTGGAGGCCGAGGGGCGGGCTCGAGGCCGGAGCGTGTTCCTCAACGTGGTGGGCTGCGGACTGGGAGTGTGGAAGATATCCCCTCACCAGACCGACGTGTACGTGCTCACCTTCCTCGAACGCATCCGCGCCATGCTGGACGAGGAGGCACTCGATCACATCACAGACGTCAACTTCGCCTATATTGGTACTTCAAAGAGTGTTACAGCTTTATTCGCGGATCGAAGTGAAGACAAAGAGAGTGCCGCTAAGATAATGTTTCTGAAGAACGAGAGACATCCGAAGGGTGGCGTGAGCGTGCAGCTGGAGGACAGGGAGCCGGCGAGCAGGCTGCACGGGCGGCACCGGGGCAAGCTGCTCGTCCTCACCTATCCCTGGGACGGGAACGCGCAGCCGGGGAACGAGTTCTGGGAGGAAAGTTTGTCGAGTTCAGGCGACCCGGCGGCCGCGTGCTCCACGCAAGTGTCGGAATTGCACAACGCGCGCGGTGCGGGTAGCCGCACGCGGCGGCGTGCACGCGCTCCGGGACCGCGCGCGGCCGCTCACACCTGTGTCGCTTAG
Protein
MDLAKLLEDLPWIKLDWCFPSMTQETNELIQKCTEIPEIEPDPEVDEIIERSKNFPIPFPIQTVRLEKLKEHRPIDRLKRNISETYPIIHERVLLLMAHFLIYKREHGSSIEKELYRDMTIPELIDRLLLKRAVSFMGARDAYMLMSGKKGVDGWENVGTPAETEPLVLKDVLSYDEIKLSAFLFVSGPTECINSGSRRNCGVLDDDDIEKEAIIIGAIGPRFKRLNRMDYEDMVISKTQNTAERGYGEHEAPTRCMDVLRHAYTRDASLAKRAWRQLWAELYQVHSYTYEELSARLAGAASDRYVKLPRGGAWFDNEVYYKRICILAETVLLEAEGRARGRSVFLNVVGCGLGVWKISPHQTDVYVLTFLERIRAMLDEEALDHITDVNFAYIGTSKSVTALFADRSEDKESAAKIMFLKNERHPKGGVSVQLEDREPASRLHGRHRGKLLVLTYPWDGNAQPGNEFWEESLSSSGDPAAACSTQVSELHNARGAGSRTRRRARAPGPRAAAHTCVA

Summary

EMBL
BABH01018558    BABH01018559    BABH01018560    BABH01018557    KQ459166    KPJ03543.1    + More
KQ460689    KPJ12747.1    ODYU01007498    SOQ50318.1    KZ149970    PZC76090.1    AGBW02014237    OWR42043.1    GAIX01003657    JAA88903.1    GEZM01036097    JAV82980.1    GEZM01036098    JAV82979.1    JTDY01000039    KOB79241.1    LJIG01009049    KRT83858.1    GEZM01074086    JAV64679.1    GAKP01017593    GAKP01017592    JAC41360.1    GAKP01017589    JAC41363.1    GAKP01013186    JAC45766.1    NEVH01013195    PNF30104.1    GBXI01014231    JAD00061.1    KQ971348    EFA04874.1    NEVH01016959    PNF24846.1    GBXI01008898    JAD05394.1    GBXI01001584    JAD12708.1    GBXI01000555    JAD13737.1    KQ435756    KOX75900.1    GL769036    EFZ10832.1    GEZM01019121    JAV89864.1    GAMC01010573    JAB95982.1    KQ767768    OAD53304.1    GAMC01018161    JAB88394.1    PYGN01000874    PSN39812.1    GL435030    EFN74149.1    KQ414658    KOC65650.1    KQ434904    KZC11193.1    GDHF01028203    GDHF01017058    JAI24111.1    JAI35256.1    GL449507    EFN82628.1    GL888730    EGI58245.1    GAKP01007237    JAC51715.1    GDHF01019032    JAI33282.1    JXJN01003232    GAMC01006687    GAMC01006686    JAB99868.1    APGK01032677    KB740848    ENN78655.1    KA644774    AFP59403.1    KQ971354    EFA06000.1    CH916370    EDW00169.1    APGK01042182    APGK01042183    KB741002    ENN75744.1    CH933810    EDW06835.2    EDW00170.1    KK852815    KDR15804.1    PSN39813.1    GDHF01031119    JAI21195.1    GBYB01012829    JAG82596.1    GFDG01002533    JAV16266.1    CM000366    EDX17075.1    GFDG01002532    JAV16267.1    GFDG01002534    JAV16265.1    GDHF01012517    JAI39797.1    GAKP01017590    JAC41362.1    AE014298    AY113290    AAF45952.2    AAM29295.1    CH954180    EDV45812.1    CH963847    EDW72800.1    KQ976394    KYM93143.1    GAMC01018162    JAB88393.1    CH964291    EDW86528.1    CH479204    EDW30543.1    CH379063    EAL32677.2    OUUW01000003    SPP78468.1    GAKP01017595    JAC41357.1    JRES01001596    KNC21627.1    BT127001    AEE61963.1    CH940664    EDW62915.1    KQ981225    KYN44376.1    CH902630    EDV38483.1    GAMC01018160    JAB88395.1    CH480819    EDW53167.1    CP012528    ALC49636.1    GBXI01011080    JAD03212.1    KQ980404    KYN16193.1    KQ977636    KYN01149.1    GL888053    EGI68698.1    EDW62914.2    KRF80850.1    KRF80851.1    SPP78469.1    EDV38587.1    KRF80849.1    EDW06834.1    CM000162    EDX01203.2   
Pfam
PF16062   DUF4804        + More
PF01734   Patatin
PF01424   R3H
Interpro
IPR032063   DUF4804        + More
IPR016035   Acyl_Trfase/lysoPLipase       
IPR002641   PNPLA_dom       
IPR036867   R3H_dom_sf       
IPR017330   SPAG7       
IPR001374   R3H_dom       
SUPFAM
SSF52151   SSF52151        + More
SSF82708   SSF82708       
Gene 3D

Ontologies

Topology

Length:
518
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00450999999999999
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00049
outside
1  -  518
 
 

Population Genetic Test Statistics

Pi
255.965617
Theta
19.057641
Tajima's D
-1.329266
CLR
251.229637
CSRT
0.0831458427078646
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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