Gene

KWMTBOMO16232

Annotation

PREDICTED:_U6_snRNA-associated_Sm-like_protein_LSm6_[Bombyx_mori]

Location

Bomo_Chr28(+):2617124-2618704      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.064 Mitochondrial   Reliability : 1.183 Nuclear   Reliability : 1.203

CDS

ATGAGTCGTAAGGAAGCTTTGTCCTCGTTTATACAGCAGATTCACGGTCGCCCAGTTGTCGTTAAATTAAACAGCGGCGTTGACTATAGAGGTGTTCTAGCGTGTTTAGATGGATACATGAATATAGCCTTGGAACAGACCGAGGAATATGTAAACGGACAGCTGAAAAATAAATATGGCGATGCATTCATACGTGGGAATAATGTTCTGTATATAAGTACACAGAAGCGAAGAATTTAG

Protein

MSRKEALSSFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRI

Description

Associated with the spliceosome snRNP U1, U2, U4/U6 and U5.

Similarity

Belongs to the snRNP Sm proteins family.

Uniprot

A0A182FCD8   A0A2A4JMI8   A0A3S2NB39   A0A2H1V4J3   A0A0N1PEV0   S4NQH4   + More
A0A212FE58   A0A0N0PCD6   F4WQV6   E0VXX3   A0A067QUL0   A0A2P8ZLW9   D6WJY0   A0A2J7QMT2   A0A154NX93   A0A0L7RBU0   A0A2A3EV94   A0A088AJ71   A0A232EWP0   K7J0T9   E2C4F2   A0A1W4WVC4   N6TLY9   A0A151INP0   A0A195ERX6   A0A158NTJ3   E2A7B8   A0A1L8DGX7   A0A1I8N965   A0A1B0FDV3   A0A1A9XJA2   A0A1B0B237   U5EUW6   A0A0L0CFY5   A0A2M3ZD26   A0A1L8EHZ2   A0A2M4AVD4   A0A0K8TRH5   A0A1B0CB65   A0A2M4C563   A0A1A9WMT8   A0A182PGG9   A0A182N881   B0X703   A0A336KLE8   A0A182TQ16   A0A084W2I1   J9HS06   A0A1A9ZNQ2   A0A182IN44   Q7Q7G9   A0A182RA15   A0A182HMI9   A0A182MAB7   A0A182QDN5   A0A151X381   A0A195BQ35   A0A310SH29   A0A1I8QDT2   A0A182XD55   A0A026WB27   A0A023EBK5   T1H2P9   B4ME58   B4KQL6   A0A0M4EVD6   B4J991   A0A1W4VIK9   A0A3B0JFX3   Q28XW8   B4GH55   B3MIB6   B4NNL1   B4I7G9   B3NK12   B4QFJ4   Q9W2P5   Q6XI38   A0A195EG01   A0A224Y4H4   A0A0P4VU07   A0A0V0G9I9   A6YPM5   A0A069DN12   A0A1S4EF97   A0A023FCR0   A0A182WB53   J9M879   W5JT70   A0A182KVZ4   A0A182UP37   A0A2L2YHS8   K1RHV4   A0A1J1IWE8   A0A1L8EAB6   A0A023GGU4   G3MN99   A0A224YZ85   A0A0K8R759   A0A131YQU2  

Pubmed

26354079    23622113    22118469    21719571    20566863    24845553    + More
29403074    18362917    19820115    28648823    20075255    20798317    23537049    21347285    25315136    26108605    26369729    24438588    17510324    12364791    14747013    17210077    24508170    30249741    24945155    26483478    17994087    15632085    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    14525923    17550304    27129103    18207082    26334808    25474469    20920257    23761445    20966253    26561354    22992520    22216098    28797301    26830274   

EMBL

NWSH01001099    PCG72610.1    RSAL01000292    RVE42886.1    ODYU01000645    SOQ35765.1    + More
KQ459166    KPJ03540.1    GAIX01014782    JAA77778.1    AGBW02008980    OWR51988.1    KQ460689    KPJ12751.1    KPJ12752.1    GL888275    EGI63469.1    DS235841    EEB18229.1    KK852992    KDR12750.1    PYGN01000019    PSN57494.1    KQ971342    EFA03646.1    NEVH01013202    PNF29900.1    KQ434777    KZC04182.1    KQ414617    KOC68407.1    KZ288185    PBC34991.1    NNAY01001834    OXU22763.1    GL452462    EFN77189.1    APGK01059435    KB741293    KB632046    ENN70265.1    ERL88274.1    KQ976919    KYN07089.1    KQ981993    KYN30931.1    ADTU01025973    GL437329    EFN70615.1    GFDF01008382    JAV05702.1    CCAG010007047    CCAG010007048    JXJN01007396    GANO01002147    JAB57724.1    JRES01000440    KNC31160.1    GGFM01005693    MBW26444.1    GFDG01000511    JAV18288.1    GGFK01011409    MBW44730.1    GDAI01000862    JAI16741.1    AJWK01004859    GGFJ01011303    MBW60444.1    DS232431    EDS41674.1    UFQS01000553    UFQS01000972    UFQT01000553    UFQT01000972    SSX04852.1    SSX08097.1    SSX25215.1    ATLV01019619    KE525275    KFB44425.1    CH477224    EJY57393.1    AXCP01003441    AAAB01008960    EAA11294.2    APCN01004443    AXCM01012800    AXCN02000959    KQ982562    KYQ54896.1    KQ976424    KYM88620.1    KQ769255    OAD52880.1    KK107347    QOIP01000007    EZA52234.1    RLU20793.1    JXUM01008016    GAPW01006750    KQ560251    JAC06848.1    KXJ83559.1    CAQQ02373938    CH940662    EDW58823.1    CH933808    EDW08185.1    CP012524    ALC41570.1    CH916367    EDW02466.1    OUUW01000001    SPP74240.1    CM000071    EAL26198.1    CH479183    EDW35825.1    CH902619    EDV35961.1    CH964282    EDW85950.1    CH480824    EDW56544.1    CH954179    EDV55378.1    CM000362    CM002911    EDX07986.1    KMY95369.1    AE013599    AY113474    AAF46645.1    AAM29479.1    AY231994    CM000158    AAR10017.1    EDW91328.1    KQ978983    KYN26802.1    GFTR01000833    JAW15593.1    GDKW01001095    JAI55500.1    GECL01001356    JAP04768.1    EF639036    ABR27921.1    GBGD01003659    JAC85230.1    GBBI01000094    JAC18618.1    ABLF02021924    ADMH02000550    ETN65924.1    IAAA01025434    IAAA01025435    IAAA01025436    IAAA01025437    LAA07587.1    JH819178    EKC33791.1    CVRI01000059    CRL03478.1    GFDG01003089    JAV15710.1    GBBM01003220    JAC32198.1    JO843350    AEO34967.1    GFPF01011792    MAA22938.1    GADI01007120    JAA66688.1    GEDV01007250    JAP81307.1   

Proteomes

UP000069272    UP000218220    UP000283053    UP000053268    UP000007151    UP000053240    + More
UP000007755    UP000009046    UP000027135    UP000245037    UP000007266    UP000235965    UP000076502    UP000053825    UP000242457    UP000005203    UP000215335    UP000002358    UP000008237    UP000192223    UP000019118    UP000030742    UP000078542    UP000078541    UP000005205    UP000000311    UP000095301    UP000092444    UP000092443    UP000092460    UP000037069    UP000092461    UP000091820    UP000075885    UP000075884    UP000002320    UP000075902    UP000030765    UP000008820    UP000092445    UP000075880    UP000007062    UP000075900    UP000075840    UP000075883    UP000075886    UP000075809    UP000078540    UP000095300    UP000076407    UP000053097    UP000279307    UP000069940    UP000249989    UP000015102    UP000008792    UP000009192    UP000092553    UP000001070    UP000192221    UP000268350    UP000001819    UP000008744    UP000007801    UP000007798    UP000001292    UP000008711    UP000000304    UP000000803    UP000002282    UP000078492    UP000079169    UP000075920    UP000007819    UP000000673    UP000075882    UP000075903    UP000005408    UP000183832   

PRIDE

Q9W2P5   

Pfam

PF07690   MFS_1        + More
PF03357   Snf7
PF01423   LSM

Interpro

IPR010920   LSM_dom_sf        + More
IPR011701   MFS       
IPR001163   LSM_dom_euk/arc       
IPR036259   MFS_trans_sf       
IPR020846   MFS_dom       
IPR005024   Snf7_fam       
IPR005829   Sugar_transporter_CS       
IPR016487   Lsm6/sSmF       

SUPFAM

SSF103473   SSF103473        + More
SSF50182   SSF50182       

CDD

cd06174  MFS

ProteinModelPortal

A0A182FCD8   A0A2A4JMI8   A0A3S2NB39   A0A2H1V4J3   A0A0N1PEV0   S4NQH4   + More
A0A212FE58   A0A0N0PCD6   F4WQV6   E0VXX3   A0A067QUL0   A0A2P8ZLW9   D6WJY0   A0A2J7QMT2   A0A154NX93   A0A0L7RBU0   A0A2A3EV94   A0A088AJ71   A0A232EWP0   K7J0T9   E2C4F2   A0A1W4WVC4   N6TLY9   A0A151INP0   A0A195ERX6   A0A158NTJ3   E2A7B8   A0A1L8DGX7   A0A1I8N965   A0A1B0FDV3   A0A1A9XJA2   A0A1B0B237   U5EUW6   A0A0L0CFY5   A0A2M3ZD26   A0A1L8EHZ2   A0A2M4AVD4   A0A0K8TRH5   A0A1B0CB65   A0A2M4C563   A0A1A9WMT8   A0A182PGG9   A0A182N881   B0X703   A0A336KLE8   A0A182TQ16   A0A084W2I1   J9HS06   A0A1A9ZNQ2   A0A182IN44   Q7Q7G9   A0A182RA15   A0A182HMI9   A0A182MAB7   A0A182QDN5   A0A151X381   A0A195BQ35   A0A310SH29   A0A1I8QDT2   A0A182XD55   A0A026WB27   A0A023EBK5   T1H2P9   B4ME58   B4KQL6   A0A0M4EVD6   B4J991   A0A1W4VIK9   A0A3B0JFX3   Q28XW8   B4GH55   B3MIB6   B4NNL1   B4I7G9   B3NK12   B4QFJ4   Q9W2P5   Q6XI38   A0A195EG01   A0A224Y4H4   A0A0P4VU07   A0A0V0G9I9   A6YPM5   A0A069DN12   A0A1S4EF97   A0A023FCR0   A0A182WB53   J9M879   W5JT70   A0A182KVZ4   A0A182UP37   A0A2L2YHS8   K1RHV4   A0A1J1IWE8   A0A1L8EAB6   A0A023GGU4   G3MN99   A0A224YZ85   A0A0K8R759   A0A131YQU2  

PDB

6QX9     E-value=2.41838e-32,     Score=340

KEGG

101746879    K12625 U6 snRNA-associated Sm-like protein LSm6 | (RefSeq) U6 snRNA-associated Sm-like protein LSm6

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)
03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0007034   GO:0055085   GO:0016021   GO:0005215   GO:0000398   GO:0005681   GO:0003723   GO:0005732   GO:0008380   GO:0006397   GO:0046540   GO:0005688   GO:0030490   GO:0000932   GO:0005730   GO:0030532   GO:0007275   GO:0016055   GO:0008233   GO:0001678   GO:0005536   GO:0046835   GO:0006281   GO:0006259  

PANTHER

PTHR11021  

Subcellular location

Nucleus  

Length:

79

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00227

Exp number, first 60 AAs:

0.00227

Total prob of N-in:

0.37428

outside

1  -  79

 

 

Pi

60.160382

Theta

65.673341

Tajima's D

-1.014735

CLR

0.408116

CSRT

0.140542972851357

Interpretation

Uncertain