Gene

KWMTBOMO16231

Pre Gene Modal

BGIBMGA013985

Annotation

PREDICTED:_GATA_zinc_finger_domain-containing_protein_1-like_[Papilio_machaon]

Location

Bomo_Chr28(+):2611604-2614450      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.312

CDS

ATGTTATGGCGAAGCGCAGAAAACGGACAAATCTGTAATGATTGCCACTTTTCAACGGTGACACCGAAGGAATCAAAATTGGACAGCAGTATTAAAACCGATTGTGAAGACATTAAGGAAGACAAAGATAATGGTAAAAATGAGGAGTCTACGCCGGCTAAAGCTACCGGCAAGGGCACTAGGAAAAGCACTAGATCAACGAGATACAAACCTAAAACACCTGCTCCACCGCCATTGAAGCAGCCGGCGCCGCGGGGCAGAGGACGCAGGAGTCTATTCAAAAGGCAGCCATTGAAAGCACCAACAGCTACAGCGACTGTTGTTACAAGTGATTCAGTATTTTATCAGGGTATGTACATGCAAGTTGGTGATATTGTTTCGATGACTGACATTGATGGTGGCACATACTATGCCCAAATTAGAGGCTTCCTAACTGATGAGTACTGTGAGAAGAGTGCAGCTGTTACTTGGTTATTACCTACAAAAGCGAGCCCACCTCCAGAGAAATGTTTTGATCCTGCTACATATATCATTGGCCCTGAAGAAGAGCTGCCTCGGAAACTGGAATACATGGAATTTGTGATGCATGCTCCATCTGATTACTACAAAGCGAGCAACAGTCCATACCCACTGACTGATAATGAACTGAATAATTATACTGGTTTTGTATGGACTTCGATGGAAGCTAAAGAGAGAACGTAG

Protein

MLWRSAENGQICNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDNGKNEESTPAKATGKGTRKSTRSTRYKPKTPAPPPLKQPAPRGRGRRSLFKRQPLKAPTATATVVTSDSVFYQGMYMQVGDIVSMTDIDGGTYYAQIRGFLTDEYCEKSAAVTWLLPTKASPPPEKCFDPATYIIGPEEELPRKLEYMEFVMHAPSDYYKASNSPYPLTDNELNNYTGFVWTSMEAKERT

Uniprot

H9JWS1   A0A2W1B6L3   A0A3S2L0N4   A0A1E1WDH9   M4M668   A0A212FE07   + More
M4M652   A0A0N0PC33   A0A2H1V667   A0A0N1IA57   A0A194QV93   A0A194QWA0   A0A0M9AAF0   A0A2A3E713   A0A088AA05   A0A026VZN7   A0A0C9RPZ6   E2A2S3   A0A0L7R6E3   E2BYA9   A0A0J7KWE9   A0A232EQ34   D6WTN0   A0A151X992   A0A1W4WQS4   K7JA43   A0A158NNM0   A0A195DLV8   A0A195F6R7   F4WQI5   A0A067RF59   A0A2J7QZ84   A0A195B362   A0A1I8M783   A0A2P2I542   A0A034WQD2   A0A1A9VTL3   A0A0L0CB98   A0A1B0AS63   T1PHU0   A0A0A1WDG7   A0A1B0A5W4   E0VHD4   A0A1A9X0P3   D1LX25   G3MQV2   V5HAQ4   W8CBW8   W4YRZ1   A0A1I8P177   G3MQV1   A0A164QYP3   A0A131XR61   A0A0P4YTA2   E9H7Q0   A0A218V0Y8   A0A2I7YC01   F1P024   A0A2P4SUF1   A0A2P6KKM1   A0A131YMR4   B9EPT0   A0A2R5L685   A0A060XIN7   A0A293L5D7   L7M4A3   B9ENM8   L7M0X9   A0A1W4ZY61   A0A336KC44   H2UGY0   A0A2I4B0L8   E3TFT4   A0A060XDT9   A0A3B3C0V2   I3J2W8   A0A3N0YR80   A0A3S2MG43  

Pubmed

19121390    28756777    23294019    22118469    26354079    24508170    + More
30249741    20798317    28648823    18362917    19820115    20075255    21347285    21719571    24845553    25315136    25348373    26108605    25830018    20566863    22216098    25765539    24495485    28049606    21292972    29325712    15592404    26830274    20433749    24755649    25576852    21551351    20634964    29451363    25186727   

EMBL

BABH01018554    KZ150272    PZC71669.1    RSAL01000292    RVE42885.1    GDQN01006045    + More
JAT85009.1    JX846990    NWSH01001099    AGG55007.1    PCG72611.1    AGBW02008980    OWR51989.1    JX847004    AGG55021.1    KQ460689    KPJ12753.1    ODYU01000645    SOQ35764.1    KQ459166    KPJ03539.1    KQ461108    KPJ09239.1    KPJ09240.1    KQ435700    KOX80497.1    KZ288361    PBC26959.1    KK107534    QOIP01000001    EZA49222.1    RLU26978.1    GBYB01010575    JAG80342.1    GL436211    EFN72258.1    KQ414646    KOC66445.1    GL451420    EFN79388.1    LBMM01002411    KMQ94862.1    NNAY01002844    OXU20451.1    KQ971355    EFA07200.1    KQ982383    KYQ56933.1    AAZX01009034    ADTU01021659    KQ980765    KYN13474.1    KQ981744    KYN36290.1    GL888273    EGI63512.1    KK852727    KDR17627.1    NEVH01009072    PNF33901.1    KQ976641    KYM78705.1    IACF01003515    LAB69129.1    GAKP01002410    JAC56542.1    JRES01000655    KNC29495.1    JXJN01002674    KA648336    AFP62965.1    GBXI01017375    JAC96916.1    DS235169    EEB12790.1    GU076002    ACY92531.1    JO844253    AEO35870.1    GANP01010134    JAB74334.1    GAMC01000144    JAC06412.1    AAGJ04088117    JO844252    AEO35869.1    LRGB01002301    KZS08185.1    GEFH01000540    JAP68041.1    GDIP01223832    JAI99569.1    GL732601    EFX72218.1    MUZQ01000073    OWK59677.1    MF955861    AUS76950.1    AADN05000033    PPHD01022378    POI27755.1    MWRG01009859    PRD26851.1    GEDV01008682    JAP79875.1    BT057655    ACM09527.1    GGLE01000863    MBY04989.1    FR905461    CDQ79483.1    GFWV01001967    MAA26697.1    GACK01007056    JAA57978.1    BT057253    ACM09125.1    GACK01007053    JAA57981.1    UFQS01000051    UFQT01000051    SSW98640.1    SSX19026.1    GU589218    ADO29170.1    FR905224    CDQ77377.1    AERX01011180    RJVU01028973    ROL48702.1    CM012447    RVE66467.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000007151    UP000053240    UP000053268    + More
UP000053105    UP000242457    UP000005203    UP000053097    UP000279307    UP000000311    UP000053825    UP000008237    UP000036403    UP000215335    UP000007266    UP000075809    UP000192223    UP000002358    UP000005205    UP000078492    UP000078541    UP000007755    UP000027135    UP000235965    UP000078540    UP000095301    UP000078200    UP000037069    UP000092460    UP000092445    UP000009046    UP000091820    UP000007110    UP000095300    UP000076858    UP000000305    UP000197619    UP000000539    UP000087266    UP000193380    UP000192224    UP000005226    UP000192220    UP000221080    UP000261560    UP000005207   

PRIDE

H9JWS1   

Pfam

PF00320   GATA

Interpro

IPR039050   GATAD1        + More
IPR000679   Znf_GATA       
IPR013088   Znf_NHR/GATA       

Gene 3D

3.30.50.10    

CDD

cd00202  ZnF_GATA

ProteinModelPortal

H9JWS1   A0A2W1B6L3   A0A3S2L0N4   A0A1E1WDH9   M4M668   A0A212FE07   + More
M4M652   A0A0N0PC33   A0A2H1V667   A0A0N1IA57   A0A194QV93   A0A194QWA0   A0A0M9AAF0   A0A2A3E713   A0A088AA05   A0A026VZN7   A0A0C9RPZ6   E2A2S3   A0A0L7R6E3   E2BYA9   A0A0J7KWE9   A0A232EQ34   D6WTN0   A0A151X992   A0A1W4WQS4   K7JA43   A0A158NNM0   A0A195DLV8   A0A195F6R7   F4WQI5   A0A067RF59   A0A2J7QZ84   A0A195B362   A0A1I8M783   A0A2P2I542   A0A034WQD2   A0A1A9VTL3   A0A0L0CB98   A0A1B0AS63   T1PHU0   A0A0A1WDG7   A0A1B0A5W4   E0VHD4   A0A1A9X0P3   D1LX25   G3MQV2   V5HAQ4   W8CBW8   W4YRZ1   A0A1I8P177   G3MQV1   A0A164QYP3   A0A131XR61   A0A0P4YTA2   E9H7Q0   A0A218V0Y8   A0A2I7YC01   F1P024   A0A2P4SUF1   A0A2P6KKM1   A0A131YMR4   B9EPT0   A0A2R5L685   A0A060XIN7   A0A293L5D7   L7M4A3   B9ENM8   L7M0X9   A0A1W4ZY61   A0A336KC44   H2UGY0   A0A2I4B0L8   E3TFT4   A0A060XDT9   A0A3B3C0V2   I3J2W8   A0A3N0YR80   A0A3S2MG43  

KEGG

101746739    K23407 GATA zinc finger domain-containing protein 1 | (RefSeq) GATA zinc finger domain-containing pr

GO

GO:0043565   GO:0006355   GO:0008270   GO:0046872   GO:0005634   GO:0005654   GO:0031497   GO:0031674  

PANTHER

PTHR13340  

Length:

233

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02456

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08571

outside

1  -  233

 

 

Pi

180.745183

Theta

178.159996

Tajima's D

0.663504

CLR

107.730403

CSRT

0.56327183640818

Interpretation

Uncertain